Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.50704 * 115.55143 * 34.32401 * 5 3 2 7 7 O 1.20824 * 119.99707 * 145.58581 * 6 5 3 8 8 O 1.34221 * 119.99880 * 325.58990 * 6 5 3 9 9 C 1.45201 * 117.00041 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47142 * 179.97438 * 9 8 6 11 11 O 1.42905 * 109.47246 * 65.00136 * 10 9 8 12 12 C 1.42898 * 114.00021 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47021 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99714 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99766 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99849 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00073 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47108 * 90.00675 * 17 15 13 19 19 H 1.48509 * 109.47049 * 210.00119 * 17 15 13 20 20 H 1.48497 * 109.47381 * 330.00317 * 17 15 13 21 21 C 1.53003 * 117.49920 * 248.62293 * 5 3 2 22 22 C 1.53006 * 60.00072 * 252.50611 * 21 5 3 23 23 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 24 24 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 26 26 H 1.08996 * 109.47005 * 299.99600 * 9 8 6 27 27 H 1.08999 * 109.47168 * 60.00030 * 9 8 6 28 28 H 1.09002 * 109.47467 * 184.99620 * 10 9 8 29 29 H 1.08994 * 109.47360 * 304.99941 * 10 9 8 30 30 H 1.09000 * 109.47527 * 299.99597 * 12 11 10 31 31 H 1.09003 * 109.46934 * 59.99972 * 12 11 10 32 32 H 0.96993 * 120.00308 * 179.97438 * 16 15 13 33 33 H 1.09005 * 117.49862 * 359.97438 * 21 5 3 34 34 H 1.08998 * 117.50254 * 145.01812 * 21 5 3 35 35 H 1.08993 * 117.49745 * 252.51069 * 22 21 5 36 36 H 1.08996 * 117.51467 * 107.47411 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2740 0.1877 -0.7678 7 8 5.3017 0.4329 -1.3539 8 8 3.7625 -1.0528 -0.7999 9 6 4.4970 -2.0492 -1.5588 10 6 3.7666 -3.3913 -1.4795 11 8 2.4977 -3.2821 -2.1278 12 6 1.7307 -4.4876 -2.1108 13 6 0.4194 -4.2587 -2.8175 14 1 0.1942 -3.2894 -3.2371 15 6 -0.4931 -5.2864 -2.9272 16 7 -1.6372 -5.0868 -3.5443 17 14 -0.1038 -6.9627 -2.2008 18 1 -0.5850 -7.0176 -0.7969 19 1 -0.7811 -8.0170 -2.9977 20 1 1.3639 -7.1862 -2.2301 21 6 4.2464 1.8056 1.2630 22 6 4.2008 2.6672 -0.0006 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.5669 -1.7342 -2.5999 27 1 5.4991 -2.1563 -1.1434 28 1 4.3621 -4.1589 -1.9737 29 1 3.6184 -3.6631 -0.4344 30 1 2.2842 -5.2777 -2.6184 31 1 1.5403 -4.7826 -1.0789 32 1 -2.2791 -5.8098 -3.6219 33 1 3.6053 2.0981 2.0947 34 1 5.2058 1.3685 1.5398 35 1 5.1301 2.7967 -0.5551 36 1 3.5297 3.5260 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815233941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = -204.632746 kcal Electronic energy + Delta-G solvation = -21279.693309 eV Core-core repulsion = 17730.108280 eV Total energy + Delta-G solvation = -3549.585030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.26664 -41.19962 -39.02275 -38.34394 -37.48676 -36.80110 -34.87455 -31.91234 -29.73329 -29.19672 -26.83877 -24.26925 -23.94088 -23.68661 -23.09361 -21.10035 -19.81960 -19.09674 -18.50167 -17.98126 -17.77768 -17.45201 -16.94184 -16.78573 -16.37373 -16.26719 -15.44962 -15.11067 -14.71973 -14.39403 -14.31606 -14.24039 -13.86179 -13.35839 -13.07998 -12.99514 -12.69152 -12.60683 -12.53353 -12.28294 -11.92277 -11.86116 -11.83681 -11.76357 -11.71553 -11.50560 -11.32878 -10.91556 -10.37418 -8.35512 -6.43476 0.63109 1.00712 1.35384 1.38394 1.46906 1.49044 1.55731 2.31030 2.44996 2.97140 2.98773 3.22003 3.36857 3.53990 3.67888 3.93217 4.13030 4.18135 4.28136 4.36479 4.43654 4.51589 4.51644 4.59971 4.70346 4.72056 4.77320 4.99506 5.02180 5.23782 5.30298 5.44659 5.93498 6.47312 6.57553 6.60503 6.74204 7.20840 8.81611 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.004762 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.422311 B = 5878.786599 C = 6733.305680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.500 3.500 4 O -0.522 6.522 5 C -0.189 4.189 6 C 0.504 3.496 7 O -0.520 6.520 8 O -0.338 6.338 9 C 0.071 3.929 10 C 0.051 3.949 11 O -0.405 6.405 12 C 0.179 3.821 13 C -0.544 4.544 14 H 0.027 0.973 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.955 3.045 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.242 1.242 21 C -0.087 4.087 22 C -0.097 4.097 23 H 0.055 0.945 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.014 0.986 32 H 0.272 0.728 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.261 9.822 12.913 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.344 3.656 4 O -0.412 6.412 5 C -0.192 4.192 6 C 0.348 3.652 7 O -0.410 6.410 8 O -0.253 6.253 9 C -0.002 4.002 10 C -0.025 4.025 11 O -0.325 6.325 12 C 0.103 3.897 13 C -0.581 4.581 14 H 0.045 0.955 15 C -0.184 4.184 16 N -0.583 5.583 17 Si 0.776 3.224 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.166 1.166 21 C -0.124 4.124 22 C -0.134 4.134 23 H 0.074 0.926 24 H 0.125 0.875 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.092 10.197 12.575 21.464 hybrid contribution -0.690 -0.928 -0.399 1.223 sum 13.403 9.269 12.175 20.342 Atomic orbital electron populations 1.23454 0.74757 1.04874 1.02671 1.86663 1.24640 1.31932 1.82540 1.22208 0.89842 0.81666 0.71871 1.90642 1.66714 1.36812 1.47077 1.20742 0.88090 0.98715 1.11619 1.22067 0.82437 0.82837 0.77882 1.90642 1.24610 1.82806 1.42911 1.86686 1.53060 1.19116 1.66446 1.23352 0.95289 0.85405 0.96149 1.22742 0.85959 0.95326 0.98502 1.87939 1.29940 1.36447 1.78176 1.20348 0.89963 0.83921 0.95418 1.21137 1.01283 0.98511 1.37192 0.95467 1.25830 0.94004 1.03588 0.94972 1.70036 1.09298 1.35006 1.43939 0.85613 0.80273 0.77374 0.79105 1.18327 1.20144 1.16557 1.23553 1.02102 0.97228 0.89521 1.23496 1.02307 0.88102 0.99452 0.92586 0.87495 0.89888 0.91434 0.86511 0.89056 0.91544 0.96571 0.96808 0.91863 0.84581 0.84244 0.84912 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.07 10.56 113.37 1.20 2.26 16 2 O -0.34 -11.59 9.11 -45.33 -0.41 -12.00 16 3 C 0.50 15.10 7.49 71.23 0.53 15.64 16 4 O -0.52 -16.81 16.01 21.94 0.35 -16.46 16 5 C -0.19 -4.57 2.58 -53.67 -0.14 -4.71 16 6 C 0.50 14.71 7.49 71.24 0.53 15.24 16 7 O -0.52 -15.88 16.01 21.97 0.35 -15.53 16 8 O -0.34 -11.06 8.73 -44.05 -0.38 -11.45 16 9 C 0.07 2.06 5.84 71.98 0.42 2.48 16 10 C 0.05 1.63 6.33 71.98 0.46 2.09 16 11 O -0.41 -18.69 10.30 -145.57 -1.50 -20.19 16 12 C 0.18 8.78 4.76 71.24 0.34 9.11 16 13 C -0.54 -32.79 9.99 25.60 0.26 -32.53 16 14 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 15 C 0.01 0.81 5.47 84.65 0.46 1.27 16 16 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 17 Si 0.96 42.38 27.47 68.60 1.88 44.26 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 21 C -0.09 -1.21 9.94 30.60 0.30 -0.90 16 22 C -0.10 -1.62 9.56 30.60 0.29 -1.32 16 23 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 24 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 25 H 0.08 2.03 8.13 -2.39 -0.02 2.01 16 26 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 27 H 0.12 2.49 8.13 -2.39 -0.02 2.47 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 31 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.13 2.02 7.67 -2.39 -0.02 2.00 16 36 H 0.13 2.04 7.67 -2.39 -0.02 2.02 16 Total: -1.00 -77.39 322.05 6.27 -71.12 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.02 Total: 10.23 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 4.66 Total: 8.63 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -74.03 SS G_CDS: -1.59 Total: -75.62 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Total: -77.39 6.27 -71.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.517 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds