Wall clock time and date at job start Mon Mar 30 2020 01:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00326 * 2 1 4 4 C 1.52998 * 109.47380 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47080 * 65.02806 * 4 3 2 6 6 C 1.36936 * 120.00062 * 263.89697 * 5 4 3 7 7 H 1.08005 * 119.99809 * 143.17219 * 6 5 4 8 8 C 1.38810 * 120.00426 * 323.18324 * 6 5 4 9 9 N 1.31615 * 120.00062 * 159.44078 * 8 6 5 10 10 Si 1.86796 * 119.99750 * 339.44534 * 8 6 5 11 11 H 1.48493 * 109.47647 * 95.41748 * 10 8 6 12 12 H 1.48507 * 109.47197 * 215.41947 * 10 8 6 13 13 H 1.48508 * 109.47274 * 335.41512 * 10 8 6 14 14 C 1.46505 * 119.99798 * 83.90639 * 5 4 3 15 15 C 1.50703 * 109.47187 * 84.84533 * 14 5 4 16 16 C 1.38526 * 120.78196 * 255.94484 * 15 14 5 17 17 C 1.38509 * 119.16600 * 179.73387 * 16 15 14 18 18 F 1.35098 * 119.62044 * 180.24845 * 17 16 15 19 19 N 1.32037 * 120.75618 * 0.55013 * 17 16 15 20 20 C 1.31908 * 121.71029 * 359.71734 * 19 17 16 21 21 C 1.38369 * 120.76273 * 0.02562 * 20 19 17 22 22 F 1.35097 * 120.41433 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47304 * 60.00165 * 1 2 3 24 24 H 1.08997 * 109.47072 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46778 * 300.00227 * 1 2 3 26 26 H 1.08992 * 109.47418 * 59.99638 * 3 2 1 27 27 H 1.09007 * 109.46881 * 299.99817 * 3 2 1 28 28 H 1.09005 * 109.46835 * 305.02866 * 4 3 2 29 29 H 1.08997 * 109.47430 * 185.02936 * 4 3 2 30 30 H 0.97009 * 119.99717 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.46545 * 204.83963 * 14 5 4 32 32 H 1.08994 * 109.47227 * 324.83986 * 14 5 4 33 33 H 1.08001 * 120.41694 * 359.97175 * 16 15 14 34 34 H 1.08005 * 119.61922 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5649 -1.2530 6 6 4.2172 -0.7821 -1.3027 7 1 3.9615 -1.3442 -2.1887 8 6 4.7903 -1.4251 -0.2142 9 7 4.6606 -2.7275 -0.0760 10 14 5.7456 -0.4418 1.0546 11 1 4.8522 -0.0980 2.1898 12 1 6.8875 -1.2512 1.5510 13 1 6.2570 0.8056 0.4318 14 6 4.1578 1.3865 -2.4523 15 6 5.5342 2.0002 -2.4366 16 6 5.7111 3.3362 -2.1161 17 6 6.9915 3.8642 -2.1065 18 9 7.1751 5.1648 -1.7904 19 7 8.0342 3.1126 -2.4086 20 6 7.9024 1.8385 -2.7238 21 6 6.6545 1.2411 -2.7491 22 9 6.5276 -0.0642 -3.0733 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 0.8899 27 1 1.6887 1.8463 -0.8901 28 1 3.8514 0.5677 0.8407 29 1 3.9786 2.1763 0.0894 30 1 5.0609 -3.1768 0.6849 31 1 4.0481 0.7631 -3.3397 32 1 3.4077 2.1770 -2.4685 33 1 4.8616 3.9573 -1.8730 34 1 8.7785 1.2550 -2.9656 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835067534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:34 Heat of formation + Delta-G solvation = -60.696465 kcal Electronic energy + Delta-G solvation = -21628.202720 eV Core-core repulsion = 18006.064471 eV Total energy + Delta-G solvation = -3622.138249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.83770 -48.29992 -39.66425 -37.55511 -35.89763 -32.96694 -31.52080 -30.19051 -29.16431 -26.67262 -25.80074 -23.65462 -23.08478 -22.43093 -20.49661 -17.76457 -17.26390 -17.03095 -16.88967 -16.12738 -15.96739 -15.57525 -15.01874 -14.82597 -14.46022 -14.32438 -14.09680 -13.87417 -13.37660 -13.10526 -12.94170 -12.47835 -12.39070 -12.20151 -11.85624 -11.63248 -11.39707 -10.94037 -10.72796 -10.52018 -9.88038 -9.74777 -9.54832 -9.52068 -9.02737 -8.60245 -8.45660 -7.07115 -6.02540 -3.42319 1.03289 1.21007 3.24636 3.40756 3.41733 3.62981 3.73725 4.38977 4.42251 4.46257 4.68237 4.84761 4.93317 5.07106 5.34232 5.52055 5.59659 5.66768 5.68470 5.81130 5.87540 5.87859 6.00795 6.03972 6.13656 6.14528 6.30169 6.39150 6.57776 6.87422 7.70242 7.80376 7.97168 8.30193 8.84276 9.62332 9.93308 11.12457 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.007806 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.437589 B = 3585.946285 C = 4228.687893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.049 3.951 4 C 0.130 3.870 5 N -0.581 5.581 6 C -0.246 4.246 7 H 0.085 0.915 8 C 0.047 3.953 9 N -0.888 5.888 10 Si 0.869 3.131 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.273 1.273 14 C 0.178 3.822 15 C -0.062 4.062 16 C -0.171 4.171 17 C 0.281 3.719 18 F -0.119 7.119 19 N -0.503 5.503 20 C 0.093 3.907 21 C 0.067 3.933 22 F -0.104 7.104 23 H 0.031 0.969 24 H 0.079 0.921 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.264 0.736 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.147 0.853 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 10.746 -3.346 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C -0.031 4.031 4 C 0.005 3.995 5 N -0.300 5.300 6 C -0.375 4.375 7 H 0.103 0.897 8 C -0.154 4.154 9 N -0.528 5.528 10 Si 0.699 3.301 11 H -0.212 1.212 12 H -0.227 1.227 13 H -0.198 1.198 14 C 0.051 3.949 15 C -0.075 4.075 16 C -0.194 4.194 17 C 0.127 3.873 18 F -0.098 7.098 19 N -0.218 5.218 20 C -0.064 4.064 21 C 0.044 3.956 22 F -0.083 7.083 23 H 0.049 0.951 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.165 0.835 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.143 10.742 -3.227 11.274 hybrid contribution -0.256 0.464 1.044 1.171 sum -1.399 11.206 -2.183 11.502 Atomic orbital electron populations 1.22657 0.83453 1.02018 0.98460 1.88262 1.17221 1.26569 1.94859 1.23163 0.96780 0.85143 0.97979 1.21345 0.90719 0.96832 0.90619 1.44272 1.74582 1.05086 1.06072 1.18710 1.34856 0.80194 1.03693 0.89744 1.25361 0.97387 0.94885 0.97815 1.69815 1.44485 1.08431 1.30106 0.87084 0.80347 0.80505 0.82130 1.21246 1.22709 1.19787 1.20164 0.87491 0.94316 0.92908 1.21763 1.00234 0.91945 0.93553 1.21586 0.96562 0.95858 1.05387 1.18087 0.90013 0.79899 0.99254 1.91580 1.96205 1.32020 1.89997 1.66922 1.33487 1.06542 1.14855 1.22492 0.96364 0.89546 0.97980 1.18573 0.94492 0.80723 1.01834 1.91632 1.96457 1.30976 1.89187 0.95064 0.90216 0.95431 0.94934 0.94244 0.91292 0.92861 0.92628 0.90235 0.92189 0.83483 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.28 10.47 -35.23 -0.37 -7.65 16 3 C 0.05 0.86 6.27 37.16 0.23 1.10 16 4 C 0.13 2.65 4.67 -4.04 -0.02 2.63 16 5 N -0.58 -12.68 2.04 -174.60 -0.36 -13.04 16 6 C -0.25 -6.47 8.89 -15.06 -0.13 -6.60 16 7 H 0.09 2.44 8.06 -52.48 -0.42 2.02 16 8 C 0.05 1.32 5.31 -17.43 -0.09 1.23 16 9 N -0.89 -26.62 13.97 55.49 0.78 -25.84 16 10 Si 0.87 22.00 24.87 -169.99 -4.23 17.77 16 11 H -0.28 -7.05 6.69 56.52 0.38 -6.67 16 12 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.18 3.15 5.60 -5.19 -0.03 3.12 16 15 C -0.06 -1.08 5.50 -104.27 -0.57 -1.66 16 16 C -0.17 -2.63 9.74 -39.37 -0.38 -3.01 16 17 C 0.28 4.61 8.41 -17.36 -0.15 4.46 16 18 F -0.12 -1.85 17.29 2.25 0.04 -1.81 16 19 N -0.50 -8.68 10.37 -13.54 -0.14 -8.82 16 20 C 0.09 1.54 11.17 -17.47 -0.20 1.34 16 21 C 0.07 1.22 7.29 -39.29 -0.29 0.93 16 22 F -0.10 -2.11 16.00 2.25 0.04 -2.08 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.63 7.98 -51.93 -0.41 0.21 16 28 H 0.07 1.61 3.35 -51.93 -0.17 1.44 16 29 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 32 H 0.06 0.88 7.82 -51.93 -0.41 0.48 16 33 H 0.15 1.81 8.05 -52.49 -0.42 1.39 16 34 H 0.17 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -31.13 300.06 -4.18 -35.32 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -3.95 Total: -3.51 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.51 Total: 5.14 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.28 Total: -47.70 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.37 Total: -7.65 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.23 Total: 17.77 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.13 -4.18 -35.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds