Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86802 * 120.00159 * 2 1 4 4 H 1.48505 * 109.46981 * 239.99536 * 3 2 1 5 5 H 1.48493 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47404 * 120.00012 * 3 2 1 7 7 C 1.38856 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00581 * 180.02562 * 7 2 1 9 9 O 1.34802 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.34892 * 117.00481 * 180.02562 * 9 7 2 11 11 O 1.21671 * 119.99806 * 359.97438 * 10 9 7 12 12 C 1.46133 * 120.00184 * 180.02562 * 10 9 7 13 13 C 1.33684 * 118.24480 * 180.02562 * 12 10 9 14 14 C 1.47132 * 118.25200 * 0.35061 * 13 12 10 15 15 C 1.39875 * 120.17643 * 244.72963 * 14 13 12 16 16 C 1.37876 * 119.82235 * 179.72356 * 15 14 13 17 17 C 1.38414 * 120.17453 * 0.53062 * 16 15 14 18 18 C 1.38407 * 120.35112 * 359.76443 * 17 16 15 19 19 C 1.37881 * 120.17898 * 359.95822 * 18 17 16 20 20 C 1.50131 * 123.49777 * 180.63622 * 13 12 10 21 21 C 1.53001 * 110.11791 * 342.62175 * 20 13 12 22 22 C 1.53335 * 108.57765 * 50.10111 * 21 20 13 23 23 C 1.50121 * 118.24828 * 0.02562 * 12 10 9 24 24 H 0.96995 * 120.00034 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.08758 * 359.97438 * 15 14 13 26 26 H 1.08004 * 119.91115 * 180.27616 * 16 15 14 27 27 H 1.07999 * 119.82612 * 179.74789 * 17 16 15 28 28 H 1.08001 * 119.91484 * 179.97438 * 18 17 16 29 29 H 1.07994 * 120.09282 * 179.97438 * 19 18 17 30 30 H 1.09000 * 109.35924 * 102.81487 * 20 13 12 31 31 H 1.08991 * 109.36212 * 222.41913 * 20 13 12 32 32 H 1.08997 * 109.63402 * 290.36694 * 21 20 13 33 33 H 1.08997 * 109.76459 * 169.91106 * 21 20 13 34 34 H 1.08998 * 109.61573 * 171.65449 * 22 21 20 35 35 H 1.08995 * 109.61649 * 51.11539 * 22 21 20 36 36 H 1.08999 * 109.36143 * 282.81520 * 23 12 10 37 37 H 1.08998 * 109.36694 * 42.55241 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0082 -1.2025 0.0005 8 1 3.0882 -1.2026 0.0010 9 8 1.3342 -2.3699 0.0005 10 6 2.0688 -3.5013 0.0016 11 8 3.2838 -3.4377 0.0021 12 6 1.4053 -4.8033 0.0011 13 6 2.1674 -5.9017 0.0027 14 6 3.6292 -5.7351 0.0129 15 6 4.3934 -6.1650 -1.0769 16 6 5.7622 -6.0001 -1.0622 17 6 6.3814 -5.4210 0.0319 18 6 5.6329 -4.9986 1.1167 19 6 4.2626 -5.1512 1.1150 20 6 1.6111 -7.2961 -0.0115 21 6 0.1382 -7.2794 0.4021 22 6 -0.5910 -6.2184 -0.4309 23 6 -0.0955 -4.8360 -0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 3.9121 -6.6212 -1.9294 26 1 6.3532 -6.3275 -1.9048 27 1 7.4544 -5.2983 0.0392 28 1 6.1234 -4.5480 1.9669 29 1 3.6799 -4.8215 1.9624 30 1 1.6998 -7.7103 -1.0158 31 1 2.1749 -7.9171 0.6846 32 1 0.0577 -7.0325 1.4606 33 1 -0.3070 -8.2574 0.2196 34 1 -1.6647 -6.2921 -0.2584 35 1 -0.3761 -6.3720 -1.4883 36 1 -0.4633 -4.6154 1.0009 37 1 -0.4723 -4.0868 -0.6975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838062961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -61.614027 kcal Electronic energy + Delta-G solvation = -20882.839601 eV Core-core repulsion = 17782.598342 eV Total energy + Delta-G solvation = -3100.241258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55087 -39.88856 -38.60543 -37.08044 -34.33417 -33.45041 -32.18359 -31.66210 -29.82382 -27.61023 -24.90951 -24.51418 -23.32903 -22.54345 -21.71362 -19.81820 -19.20917 -18.47825 -17.42823 -16.82912 -16.58176 -16.27426 -15.74573 -15.60528 -15.13365 -14.93758 -14.61092 -14.57413 -14.22915 -14.11199 -13.69076 -13.50140 -13.29124 -13.13601 -12.95808 -12.37358 -12.20468 -12.20288 -12.02789 -11.94747 -11.70371 -11.63230 -11.32808 -10.92109 -10.70866 -9.95648 -9.63443 -8.96901 -8.55166 -6.30824 -0.00534 0.63960 0.79965 1.29701 1.37790 1.45573 2.10904 2.18661 2.84715 2.99236 3.02530 3.56609 3.99395 4.06193 4.08198 4.11956 4.18987 4.29414 4.30336 4.47831 4.61952 4.69876 4.71867 4.81262 4.85909 5.00721 5.05022 5.07874 5.14422 5.20872 5.24329 5.29752 5.40175 5.47977 5.63985 5.67269 5.71530 5.82950 5.83720 6.24053 6.71022 6.89667 7.82131 8.65333 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.007090 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.777526 B = 3948.477145 C = 5476.099439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.005 4.005 3 Si 1.014 2.986 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.414 4.414 8 H 0.078 0.922 9 O -0.241 6.241 10 C 0.413 3.587 11 O -0.551 6.551 12 C -0.149 4.149 13 C -0.004 4.004 14 C -0.055 4.055 15 C -0.121 4.121 16 C -0.134 4.134 17 C -0.126 4.126 18 C -0.144 4.144 19 C -0.064 4.064 20 C -0.074 4.074 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.070 4.070 24 H 0.278 0.722 25 H 0.134 0.866 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -15.533 -0.478 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.205 4.205 3 Si 0.833 3.167 4 H -0.188 1.188 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.096 0.904 9 O -0.149 6.149 10 C 0.264 3.736 11 O -0.449 6.449 12 C -0.150 4.150 13 C -0.005 4.005 14 C -0.055 4.055 15 C -0.139 4.139 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.162 4.162 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.107 4.107 24 H 0.088 0.912 25 H 0.152 0.848 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.803 -15.346 -0.475 15.817 hybrid contribution 0.323 1.589 0.193 1.633 sum 4.126 -13.757 -0.282 14.365 Atomic orbital electron populations 1.70046 1.07617 1.29335 1.46867 1.26503 0.96852 1.02197 0.94949 0.84737 0.77665 0.74619 0.79651 1.18802 1.18138 1.18732 1.21340 0.92018 0.81437 1.54171 0.90446 1.83978 1.40060 1.14036 1.76853 1.22103 0.86508 0.87075 0.77921 1.90754 1.15438 1.87752 1.50983 1.20522 0.97188 0.88445 1.08884 1.20766 0.91402 0.95715 0.92636 1.18988 0.92476 0.98647 0.95408 1.21305 0.94433 1.00906 0.97253 1.21245 0.94462 1.00451 0.98969 1.21386 1.00587 0.98866 0.93545 1.21098 0.93640 1.01448 1.00002 1.20924 0.94944 0.95109 0.97217 1.20610 0.96828 0.89383 1.04232 1.21639 0.93489 1.00222 0.99851 1.21618 1.00909 0.91867 1.00438 1.20247 0.88994 0.99743 1.01729 0.91231 0.84793 0.83622 0.84119 0.85828 0.89465 0.87626 0.88568 0.91967 0.87771 0.89412 0.91122 0.91417 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.81 13.67 21.64 0.30 -54.51 16 2 C 0.00 -0.29 5.50 84.91 0.47 0.18 16 3 Si 1.01 45.07 29.55 68.60 2.03 47.10 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.41 -26.13 9.65 67.97 0.66 -25.47 16 8 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16 9 O -0.24 -14.91 9.04 10.24 0.09 -14.82 16 10 C 0.41 22.27 7.57 69.87 0.53 22.80 16 11 O -0.55 -30.67 10.79 19.28 0.21 -30.46 16 12 C -0.15 -6.18 5.80 -19.03 -0.11 -6.29 16 13 C 0.00 -0.14 5.30 -18.74 -0.10 -0.24 16 14 C -0.06 -2.01 3.54 -20.15 -0.07 -2.08 16 15 C -0.12 -3.83 9.74 22.58 0.22 -3.61 16 16 C -0.13 -3.84 10.03 22.23 0.22 -3.62 16 17 C -0.13 -3.77 10.04 22.35 0.22 -3.54 16 18 C -0.14 -4.98 10.03 22.23 0.22 -4.76 16 19 C -0.06 -2.49 6.61 22.58 0.15 -2.34 16 20 C -0.07 -1.64 5.74 29.67 0.17 -1.47 16 21 C -0.11 -2.24 5.98 30.71 0.18 -2.06 16 22 C -0.11 -2.67 5.98 30.71 0.18 -2.49 16 23 C -0.07 -2.53 5.44 29.67 0.16 -2.37 16 24 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 27 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.09 3.65 8.04 -2.91 -0.02 3.62 16 30 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.05 2.24 7.92 -2.39 -0.02 2.22 16 Total: -1.00 -76.57 311.64 6.79 -69.78 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 1.06 Total: 20.26 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 3.11 Total: -37.35 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.30 Total: -54.51 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: 0.30 Total: -45.28 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.57 6.79 -69.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838062961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.163 kcal (2) G-P(sol) polarization free energy of solvation -76.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds