Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00319 * 2 1 4 4 H 1.48496 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 300.00189 * 3 2 1 6 6 H 1.48500 * 109.47003 * 59.99844 * 3 2 1 7 7 C 1.37880 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99779 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.46963 * 179.97438 * 9 7 2 11 11 C 1.81401 * 103.00113 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47237 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46139 * 185.00167 * 12 11 10 14 14 C 1.53023 * 109.45886 * 179.83705 * 13 12 11 15 15 C 1.52966 * 109.42588 * 59.79693 * 14 13 12 16 16 C 1.52958 * 109.82149 * 300.29333 * 15 14 13 17 17 C 1.52989 * 109.46497 * 64.95852 * 12 11 10 18 18 O 1.43705 * 109.40502 * 60.40488 * 15 14 13 19 19 C 1.44788 * 104.79514 * 95.49270 * 18 15 14 20 20 C 1.54915 * 101.72585 * 36.06411 * 19 18 15 21 21 O 1.43302 * 109.64812 * 179.72133 * 15 14 13 22 22 H 0.96999 * 119.99763 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47121 * 59.99813 * 9 7 2 24 24 H 1.08995 * 109.47357 * 299.99424 * 9 7 2 25 25 H 1.09005 * 109.46682 * 60.00233 * 11 10 9 26 26 H 1.09001 * 109.47104 * 300.00705 * 11 10 9 27 27 H 1.09003 * 109.45841 * 304.97916 * 12 11 10 28 28 H 1.08992 * 109.47533 * 299.83703 * 13 12 11 29 29 H 1.08996 * 109.47129 * 59.84506 * 13 12 11 30 30 H 1.09000 * 109.47736 * 179.78362 * 14 13 12 31 31 H 1.08997 * 109.47868 * 299.81519 * 14 13 12 32 32 H 1.08999 * 109.47850 * 299.70494 * 16 15 14 33 33 H 1.08997 * 109.47567 * 179.67590 * 16 15 14 34 34 H 1.08999 * 109.46816 * 300.15684 * 17 12 11 35 35 H 1.09003 * 109.47242 * 60.15094 * 17 12 11 36 36 H 1.08998 * 110.97647 * 277.95853 * 19 18 15 37 37 H 1.09000 * 111.01004 * 154.18985 * 19 18 15 38 38 H 1.09001 * 110.69841 * 206.07713 * 20 19 18 39 39 H 1.09010 * 110.69055 * 82.87461 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0005 11 6 1.3515 -5.3367 0.0013 12 6 2.2083 -6.6042 0.0020 13 6 1.3032 -7.8315 -0.1231 14 6 2.1605 -9.0990 -0.1264 15 6 2.9573 -9.1777 1.1770 16 6 3.8596 -7.9497 1.3083 17 6 2.9996 -6.6840 1.3090 18 8 2.0491 -9.2245 2.2897 19 6 1.9013 -10.6338 2.5873 20 6 3.3275 -11.1671 2.3017 21 8 3.7572 -10.3667 1.1817 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 0.7221 -5.3236 -0.8885 26 1 0.7226 -5.3231 0.8915 27 1 2.8998 -6.5756 -0.8401 28 1 0.6133 -7.8617 0.7202 29 1 0.7379 -7.7727 -1.0531 30 1 1.5157 -9.9737 -0.2117 31 1 2.8482 -9.0704 -0.9716 32 1 4.5536 -7.9171 0.4684 33 1 4.4202 -8.0087 2.2412 34 1 3.6422 -5.8081 1.3986 35 1 2.3082 -6.7149 2.1511 36 1 1.1712 -11.0981 1.9246 37 1 1.6296 -10.7862 3.6319 38 1 3.2972 -12.2227 2.0318 39 1 3.9780 -11.0068 3.1616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840215270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = -119.348603 kcal Electronic energy + Delta-G solvation = -19055.599035 eV Core-core repulsion = 16088.298169 eV Total energy + Delta-G solvation = -2967.300866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.00723 -37.49343 -35.14583 -33.10279 -31.96975 -30.91835 -29.03196 -28.46659 -25.51524 -23.56894 -22.96823 -22.78006 -21.17552 -19.62726 -17.33352 -16.95635 -16.45937 -15.71589 -15.42147 -15.25286 -14.61781 -14.41271 -14.09557 -13.73705 -13.45546 -13.18183 -12.97577 -12.73940 -12.46994 -12.35687 -12.20440 -11.96285 -11.82936 -11.45162 -11.14940 -10.90273 -10.84091 -10.67404 -10.51755 -10.41525 -10.26244 -9.80363 -9.48257 -9.42995 -8.74797 -8.58321 -6.58642 -6.15742 -4.19329 2.75721 3.18262 3.27298 3.34341 3.41178 3.76175 3.96245 4.29922 4.38773 4.53639 4.59050 4.67622 4.86807 4.89469 5.10642 5.16908 5.21421 5.22058 5.33507 5.40495 5.47870 5.49777 5.63290 5.70696 5.83010 5.90384 5.94503 6.09022 6.15187 6.21555 6.28326 6.52218 6.63209 6.95338 7.15693 7.17519 7.79372 8.06582 8.82998 9.43443 10.95770 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.050358 B = 0.003274 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.879940 B = 8549.515603 C = 8678.877086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.090 3.910 10 S -0.310 6.310 11 C -0.083 4.083 12 C -0.068 4.068 13 C -0.106 4.106 14 C -0.132 4.132 15 C 0.258 3.742 16 C -0.117 4.117 17 C -0.110 4.110 18 O -0.362 6.362 19 C 0.013 3.987 20 C 0.020 3.980 21 O -0.381 6.381 22 H 0.264 0.736 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -22.699 3.441 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.549 4.549 8 H 0.086 0.914 9 C -0.057 4.057 10 S -0.083 6.083 11 C -0.231 4.231 12 C -0.087 4.087 13 C -0.145 4.145 14 C -0.170 4.170 15 C 0.181 3.819 16 C -0.154 4.154 17 C -0.148 4.148 18 O -0.282 6.282 19 C -0.064 4.064 20 C -0.056 4.056 21 O -0.302 6.302 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.351 -22.392 3.393 23.062 hybrid contribution -1.161 0.665 0.056 1.339 sum 3.190 -21.728 3.449 22.230 Atomic orbital electron populations 1.69968 1.06147 1.27128 1.50012 1.24977 0.94964 0.99288 0.94772 0.86310 0.80123 0.82626 0.77686 1.19409 1.20773 1.20772 1.20749 0.93494 0.88820 1.51794 0.91441 1.21026 0.93734 0.91063 0.99886 1.86497 1.21522 1.02267 1.97975 1.23270 1.00240 0.95709 1.03884 1.20929 0.96663 0.92263 0.98867 1.21527 0.97810 0.92634 1.02510 1.22067 0.99196 0.98988 0.96773 1.23436 0.84490 0.86618 0.87340 1.21839 0.97589 0.92816 1.03201 1.21578 0.98940 0.96712 0.97532 1.89315 1.65167 1.23133 1.50620 1.24352 0.96901 0.82171 1.02953 1.24163 0.94748 0.96555 0.90154 1.88888 1.60257 1.32350 1.48718 0.92629 0.94819 0.94767 0.91099 0.91042 0.90509 0.91057 0.91426 0.91560 0.90239 0.90116 0.91056 0.89732 0.91190 0.90873 0.87538 0.88550 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.65 9.13 -34.44 -0.31 -14.96 16 8 H 0.07 1.94 7.71 -52.48 -0.40 1.54 16 9 C 0.09 2.39 5.70 36.00 0.21 2.59 16 10 S -0.31 -6.81 20.46 -107.50 -2.20 -9.01 16 11 C -0.08 -1.43 5.38 37.16 0.20 -1.23 16 12 C -0.07 -0.97 2.18 -90.62 -0.20 -1.16 16 13 C -0.11 -1.27 5.06 -26.72 -0.14 -1.41 16 14 C -0.13 -1.47 5.29 -26.74 -0.14 -1.61 16 15 C 0.26 3.04 1.03 -26.77 -0.03 3.01 16 16 C -0.12 -1.46 5.34 -26.74 -0.14 -1.60 16 17 C -0.11 -1.56 4.89 -26.73 -0.13 -1.69 16 18 O -0.36 -4.31 9.67 -59.04 -0.57 -4.88 16 19 C 0.01 0.10 7.91 38.17 0.30 0.41 16 20 C 0.02 0.16 8.07 38.17 0.31 0.47 16 21 O -0.38 -4.38 10.87 -59.04 -0.64 -5.02 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 26 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.33 7.13 -51.93 -0.37 0.96 16 35 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -30.89 323.10 -9.63 -40.52 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.63 Total: -1.96 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -0.17 Total: -15.46 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -1.21 Total: -9.91 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -2.20 Total: -9.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.89 -9.63 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840215270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.830 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds