Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00319 * 2 1 4 4 H 1.48496 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 300.00189 * 3 2 1 6 6 H 1.48500 * 109.47003 * 59.99844 * 3 2 1 7 7 C 1.37880 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99779 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.46963 * 179.97438 * 9 7 2 11 11 C 1.81401 * 103.00113 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47237 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46139 * 185.00167 * 12 11 10 14 14 C 1.53023 * 109.45886 * 179.83705 * 13 12 11 15 15 C 1.52966 * 109.42588 * 59.79693 * 14 13 12 16 16 C 1.52958 * 109.82149 * 300.29333 * 15 14 13 17 17 C 1.52989 * 109.46497 * 64.95852 * 12 11 10 18 18 O 1.43705 * 109.40502 * 60.40488 * 15 14 13 19 19 C 1.44788 * 104.79514 * 95.49270 * 18 15 14 20 20 C 1.54915 * 101.72585 * 36.06411 * 19 18 15 21 21 O 1.43302 * 109.64812 * 179.72133 * 15 14 13 22 22 H 0.96999 * 119.99763 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47121 * 59.99813 * 9 7 2 24 24 H 1.08995 * 109.47357 * 299.99424 * 9 7 2 25 25 H 1.09005 * 109.46682 * 60.00233 * 11 10 9 26 26 H 1.09001 * 109.47104 * 300.00705 * 11 10 9 27 27 H 1.09003 * 109.45841 * 304.97916 * 12 11 10 28 28 H 1.08992 * 109.47533 * 299.83703 * 13 12 11 29 29 H 1.08996 * 109.47129 * 59.84506 * 13 12 11 30 30 H 1.09000 * 109.47736 * 179.78362 * 14 13 12 31 31 H 1.08997 * 109.47868 * 299.81519 * 14 13 12 32 32 H 1.08999 * 109.47850 * 299.70494 * 16 15 14 33 33 H 1.08997 * 109.47567 * 179.67590 * 16 15 14 34 34 H 1.08999 * 109.46816 * 300.15684 * 17 12 11 35 35 H 1.09003 * 109.47242 * 60.15094 * 17 12 11 36 36 H 1.08998 * 110.97647 * 277.95853 * 19 18 15 37 37 H 1.09000 * 111.01004 * 154.18985 * 19 18 15 38 38 H 1.09001 * 110.69841 * 206.07713 * 20 19 18 39 39 H 1.09010 * 110.69055 * 82.87461 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0005 11 6 1.3515 -5.3367 0.0013 12 6 2.2083 -6.6042 0.0020 13 6 1.3032 -7.8315 -0.1231 14 6 2.1605 -9.0990 -0.1264 15 6 2.9573 -9.1777 1.1770 16 6 3.8596 -7.9497 1.3083 17 6 2.9996 -6.6840 1.3090 18 8 2.0491 -9.2245 2.2897 19 6 1.9013 -10.6338 2.5873 20 6 3.3275 -11.1671 2.3017 21 8 3.7572 -10.3667 1.1817 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 0.7221 -5.3236 -0.8885 26 1 0.7226 -5.3231 0.8915 27 1 2.8998 -6.5756 -0.8401 28 1 0.6133 -7.8617 0.7202 29 1 0.7379 -7.7727 -1.0531 30 1 1.5157 -9.9737 -0.2117 31 1 2.8482 -9.0704 -0.9716 32 1 4.5536 -7.9171 0.4684 33 1 4.4202 -8.0087 2.2412 34 1 3.6422 -5.8081 1.3986 35 1 2.3082 -6.7149 2.1511 36 1 1.1712 -11.0981 1.9246 37 1 1.6296 -10.7862 3.6319 38 1 3.2972 -12.2227 2.0318 39 1 3.9780 -11.0068 3.1616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840215270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = -136.881188 kcal Electronic energy + Delta-G solvation = -19056.359305 eV Core-core repulsion = 16088.298169 eV Total energy + Delta-G solvation = -2968.061136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82407 -38.52352 -35.94767 -35.29395 -32.99546 -31.91034 -30.68285 -29.82200 -26.71661 -25.11091 -24.24828 -23.71106 -22.24397 -20.65654 -18.64317 -18.08557 -17.77449 -17.15163 -16.54106 -16.34910 -16.22422 -15.57677 -15.21556 -14.88465 -14.49732 -14.48924 -14.41964 -14.16580 -13.91447 -13.58729 -13.50236 -13.14268 -12.98551 -12.75199 -12.60531 -12.36599 -12.16431 -12.04329 -11.85374 -11.62320 -11.44851 -11.22286 -11.06352 -10.75793 -10.65767 -10.33266 -8.41442 -8.33812 -6.46998 1.06000 1.39602 1.39747 1.55121 2.07229 2.36554 2.46416 2.96994 3.00580 3.60334 3.67532 3.69273 3.78031 3.99264 4.10694 4.17707 4.28030 4.39265 4.44624 4.46117 4.50329 4.60026 4.68564 4.73231 4.82335 4.92075 4.94155 4.94612 4.99633 5.02059 5.05339 5.17075 5.20659 5.38443 5.49136 5.56990 5.89009 6.18087 6.60932 7.21092 8.78685 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.050358 B = 0.003274 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.879940 B = 8549.515603 C = 8678.877086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.090 3.910 10 S -0.311 6.311 11 C -0.071 4.071 12 C -0.061 4.061 13 C -0.098 4.098 14 C -0.128 4.128 15 C 0.258 3.742 16 C -0.115 4.115 17 C -0.104 4.104 18 O -0.385 6.385 19 C 0.008 3.992 20 C 0.015 3.985 21 O -0.397 6.397 22 H 0.270 0.730 23 H 0.012 0.988 24 H 0.011 0.989 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -24.048 3.408 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.080 0.920 9 C -0.057 4.057 10 S -0.084 6.084 11 C -0.219 4.219 12 C -0.081 4.081 13 C -0.137 4.137 14 C -0.166 4.166 15 C 0.181 3.819 16 C -0.153 4.153 17 C -0.142 4.142 18 O -0.306 6.306 19 C -0.068 4.068 20 C -0.061 4.061 21 O -0.319 6.319 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.029 0.971 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.831 -23.757 3.365 24.475 hybrid contribution -1.336 0.943 0.114 1.639 sum 3.496 -22.814 3.480 23.341 Atomic orbital electron populations 1.70070 1.07737 1.28493 1.50270 1.25951 0.95903 1.03161 0.93803 0.85205 0.78762 0.77692 0.78241 1.18877 1.19688 1.19752 1.21049 0.93427 0.90267 1.52625 0.91984 1.20727 0.94225 0.93184 0.97607 1.86329 1.21420 1.02697 1.97950 1.23406 0.99919 0.94414 1.04172 1.20916 0.96650 0.91620 0.98889 1.21451 0.97417 0.91811 1.02999 1.22035 0.99241 0.98774 0.96574 1.23335 0.84431 0.86382 0.87741 1.21792 0.97573 0.92562 1.03348 1.21458 0.98617 0.96953 0.97153 1.89292 1.65121 1.25530 1.50676 1.24618 0.97276 0.80357 1.04536 1.24415 0.94676 0.97454 0.89521 1.88864 1.60592 1.32416 1.50007 0.92087 0.96996 0.97111 0.90424 0.91123 0.90440 0.91443 0.90171 0.89990 0.89866 0.89841 0.91091 0.91793 0.92056 0.89645 0.85600 0.85990 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 2 C 0.01 0.71 5.46 84.66 0.46 1.17 16 3 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -31.47 9.13 25.60 0.23 -31.24 16 8 H 0.06 3.63 7.71 -2.91 -0.02 3.61 16 9 C 0.09 4.97 5.70 71.24 0.41 5.38 16 10 S -0.31 -13.94 20.46 -56.49 -1.16 -15.10 16 11 C -0.07 -2.44 5.38 71.98 0.39 -2.05 16 12 C -0.06 -1.69 2.18 -10.80 -0.02 -1.71 16 13 C -0.10 -2.17 5.06 30.60 0.15 -2.01 16 14 C -0.13 -2.55 5.29 30.59 0.16 -2.39 16 15 C 0.26 5.64 1.03 30.57 0.03 5.67 16 16 C -0.11 -2.77 5.34 30.59 0.16 -2.61 16 17 C -0.10 -2.92 4.89 30.60 0.15 -2.77 16 18 O -0.39 -8.52 9.67 -126.22 -1.22 -9.74 16 19 C 0.01 0.11 7.91 72.64 0.57 0.68 16 20 C 0.02 0.20 8.07 72.64 0.59 0.79 16 21 O -0.40 -8.31 10.87 -126.22 -1.37 -9.68 16 22 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 23 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 1.58 7.69 -2.39 -0.02 1.56 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.04 7.13 -2.39 -0.02 2.02 16 35 H 0.06 1.82 7.69 -2.39 -0.02 1.80 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -66.92 323.10 2.85 -64.06 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.00 Total: 10.36 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 3.29 Total: -31.09 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.28 Total: -55.36 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -2.59 Total: -19.42 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -13.94 SS G_CDS: -1.16 Total: -15.10 kcal Total: -66.92 2.85 -64.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840215270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.819 kcal (2) G-P(sol) polarization free energy of solvation -66.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds