Wall clock time and date at job start Mon Mar 30 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48500 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47371 * 300.00558 * 3 2 1 6 6 H 1.48498 * 109.47020 * 60.00246 * 3 2 1 7 7 C 1.38952 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00108 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99792 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99882 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99696 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47232 * 180.02562 * 12 10 9 14 14 C 1.37485 * 120.00368 * 180.02562 * 13 12 10 15 15 N 1.30343 * 119.99601 * 355.10168 * 14 13 12 16 16 N 1.37484 * 120.00399 * 175.11139 * 14 13 12 17 17 C 1.46370 * 119.64980 * 185.58404 * 16 14 13 18 18 C 1.53761 * 109.20916 * 114.90712 * 17 16 14 19 19 S 1.81747 * 108.75168 * 57.83207 * 18 17 16 20 20 C 1.81742 * 102.30570 * 305.34838 * 19 18 17 21 21 C 1.46384 * 119.64546 * 5.85116 * 16 14 13 22 22 H 0.97006 * 119.99775 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99519 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.47150 * 300.00156 * 12 10 9 25 25 H 1.09004 * 109.47330 * 60.00153 * 12 10 9 26 26 H 0.97004 * 119.99658 * 359.97438 * 13 12 10 27 27 H 0.97007 * 119.99819 * 185.81607 * 15 14 13 28 28 H 1.08999 * 109.47032 * 234.91499 * 17 16 14 29 29 H 1.09000 * 109.47065 * 354.90720 * 17 16 14 30 30 H 1.08998 * 109.69294 * 298.00079 * 18 17 16 31 31 H 1.08998 * 109.62485 * 177.62017 * 18 17 16 32 32 H 1.09003 * 109.58267 * 294.74813 * 20 19 18 33 33 H 1.09000 * 109.69706 * 174.40731 * 20 19 18 34 34 H 1.09007 * 109.46604 * 5.09778 * 21 16 14 35 35 H 1.09000 * 109.46600 * 125.08773 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0010 13 7 2.1955 -5.9765 -0.0017 14 6 1.7373 -7.2727 -0.0019 15 7 0.4597 -7.5122 0.0950 16 7 2.6265 -8.3163 -0.1041 17 6 2.1246 -9.6858 -0.2271 18 6 2.5169 -10.2466 -1.6040 19 16 4.3254 -10.1750 -1.7703 20 6 4.6760 -8.4232 -1.4366 21 6 4.0651 -8.0465 -0.0828 22 1 -0.4850 0.8401 0.0004 23 1 0.3533 -2.3906 -0.0005 24 1 0.6180 -4.9208 0.8897 25 1 0.6159 -4.9205 -0.8903 26 1 3.1492 -5.7992 -0.0029 27 1 0.1424 -8.4250 0.1798 28 1 2.5605 -10.3043 0.5575 29 1 1.0391 -9.6852 -0.1282 30 1 2.0539 -9.6492 -2.3893 31 1 2.1832 -11.2809 -1.6866 32 1 4.2356 -7.8067 -2.2204 33 1 5.7538 -8.2631 -1.4084 34 1 4.2331 -6.9867 0.1094 35 1 4.5338 -8.6372 0.7043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849027694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:45 Heat of formation + Delta-G solvation = -6.079734 kcal Electronic energy + Delta-G solvation = -18642.026176 eV Core-core repulsion = 15608.389424 eV Total energy + Delta-G solvation = -3033.636752 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72025 -39.88434 -36.61738 -35.88322 -33.96306 -33.35888 -32.39682 -30.22772 -28.81243 -26.36831 -24.57388 -23.83971 -21.39592 -20.80397 -20.13253 -19.39650 -17.70640 -17.21371 -16.97557 -16.60289 -16.39280 -16.02260 -15.81268 -15.70237 -15.13220 -14.94422 -14.82064 -14.24953 -14.05527 -13.66503 -13.53785 -13.45431 -12.95895 -12.74562 -12.54254 -12.42834 -12.10534 -11.97412 -11.55988 -10.85041 -10.52463 -10.30391 -10.08122 -9.68929 -9.07686 -8.66986 -8.49453 -5.99367 0.69708 1.36171 1.43205 1.45899 1.55631 1.61641 1.92291 2.01016 2.28765 2.62881 3.18060 3.18439 3.64640 3.80342 4.00615 4.02979 4.18207 4.24252 4.28929 4.47063 4.57189 4.57468 4.60640 4.69228 4.76669 4.85592 5.39342 5.46916 5.78394 5.92996 6.34157 6.50537 6.79150 7.05832 7.46672 7.85194 7.98046 8.67761 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039366 B = 0.003497 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.094025 B = 8005.980793 C = 8509.465977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.560 5.560 10 C 0.431 3.569 11 O -0.627 6.627 12 C 0.160 3.840 13 N -0.713 5.713 14 C 0.639 3.361 15 N -0.850 5.850 16 N -0.657 5.657 17 C 0.125 3.875 18 C -0.092 4.092 19 S -0.275 6.275 20 C -0.095 4.095 21 C 0.116 3.884 22 H 0.279 0.721 23 H 0.399 0.601 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.409 0.591 27 H 0.343 0.657 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -18.875 -1.121 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.218 3.782 11 O -0.516 6.516 12 C 0.031 3.969 13 N -0.361 5.361 14 C 0.274 3.726 15 N -0.503 5.503 16 N -0.384 5.384 17 C 0.000 4.000 18 C -0.241 4.241 19 S -0.049 6.049 20 C -0.244 4.244 21 C -0.011 4.011 22 H 0.089 0.911 23 H 0.233 0.767 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.251 0.749 27 H 0.163 0.837 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.148 0.852 34 H 0.101 0.899 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.675 -18.903 -1.378 19.521 hybrid contribution -0.236 1.097 0.083 1.125 sum 4.439 -17.806 -1.296 18.397 Atomic orbital electron populations 1.69690 1.06985 1.29502 1.49476 1.26111 0.96524 1.02622 0.95873 0.84825 0.78124 0.76812 0.78293 1.19468 1.19669 1.19637 1.19764 0.92915 0.83622 1.50257 0.89685 1.41842 1.09566 1.04595 1.63549 1.20634 0.88169 0.86176 0.83200 1.90452 1.15336 1.87677 1.58103 1.20411 0.90482 0.82384 1.03635 1.43755 1.09456 1.00832 1.82032 1.18793 0.85542 0.81300 0.87011 1.69832 1.08375 1.29192 1.42864 1.47527 1.05137 1.05239 1.80519 1.21752 1.01346 0.80692 0.96236 1.23971 0.93113 1.06744 1.00302 1.86886 1.10101 1.14141 1.93779 1.23853 1.06000 0.94271 1.00293 1.21658 0.80605 1.02303 0.96521 0.91116 0.76727 0.89392 0.89702 0.74947 0.83740 0.88454 0.88294 0.90651 0.84443 0.90790 0.85218 0.89911 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -28.25 5.29 -306.98 -1.62 -29.88 16 10 C 0.43 19.98 7.85 87.66 0.69 20.67 16 11 O -0.63 -32.45 15.24 -3.07 -0.05 -32.50 16 12 C 0.16 5.86 6.15 85.63 0.53 6.38 16 13 N -0.71 -23.29 5.53 -353.16 -1.95 -25.24 16 14 C 0.64 18.26 8.38 260.53 2.18 20.44 16 15 N -0.85 -25.35 13.19 -58.53 -0.77 -26.12 16 16 N -0.66 -14.07 2.85 -707.61 -2.02 -16.09 16 17 C 0.12 1.96 6.27 86.66 0.54 2.50 16 18 C -0.09 -1.37 6.68 72.24 0.48 -0.89 16 19 S -0.28 -4.98 22.29 -56.49 -1.26 -6.24 16 20 C -0.09 -1.72 6.67 72.06 0.48 -1.24 16 21 C 0.12 2.21 6.22 86.48 0.54 2.75 16 22 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 23 H 0.40 19.39 7.90 -92.71 -0.73 18.65 16 24 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 25 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 26 H 0.41 13.54 4.96 -92.71 -0.46 13.08 16 27 H 0.34 8.58 6.21 -92.70 -0.58 8.00 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.47 5.51 -2.39 -0.01 1.45 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.79 5.56 -2.38 -0.01 1.78 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -63.77 302.46 0.74 -63.04 By element: Atomic # 1 Polarization: 45.56 SS G_CDS: -0.62 Total: 44.94 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 6.72 Total: 32.74 kcal Atomic # 7 Polarization: -139.76 SS G_CDS: -6.08 Total: -145.84 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.50 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -1.26 Total: -6.24 kcal Total: -63.77 0.74 -63.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849027694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.956 kcal (2) G-P(sol) polarization free energy of solvation -63.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds