Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00142 * 2 1 4 4 O 1.20825 * 119.99892 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00052 * 179.97438 * 3 2 1 6 6 O 1.42901 * 109.47026 * 180.02562 * 5 3 2 7 7 C 1.42901 * 113.99881 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47226 * 179.97438 * 7 6 5 9 9 O 1.20835 * 119.99600 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00368 * 180.02562 * 8 7 6 11 11 C 1.45198 * 117.00205 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47075 * 179.97438 * 11 10 8 13 13 C 1.50701 * 115.55544 * 294.88682 * 12 11 10 14 14 H 1.07995 * 119.99892 * 95.15843 * 13 12 11 15 15 C 1.37875 * 119.99625 * 274.89404 * 13 12 11 16 16 N 1.31516 * 120.00645 * 6.38641 * 15 13 12 17 17 Si 1.86804 * 119.99966 * 186.39037 * 15 13 12 18 18 H 1.48497 * 109.46911 * 59.99497 * 17 15 13 19 19 H 1.48501 * 109.47278 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46934 * 299.99733 * 17 15 13 21 21 C 1.52999 * 117.50107 * 80.55676 * 12 11 10 22 22 C 1.53002 * 117.49851 * 149.21518 * 12 11 10 23 23 H 1.08996 * 109.46369 * 60.00153 * 1 2 3 24 24 H 1.09001 * 109.46557 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47108 * 299.99963 * 1 2 3 26 26 H 1.09003 * 109.47280 * 60.00214 * 5 3 2 27 27 H 1.09002 * 109.47023 * 300.00455 * 5 3 2 28 28 H 1.09004 * 109.47136 * 60.00321 * 7 6 5 29 29 H 1.08998 * 109.47150 * 300.00274 * 7 6 5 30 30 H 1.09001 * 109.46840 * 59.99792 * 11 10 8 31 31 H 1.09000 * 109.47129 * 299.99899 * 11 10 8 32 32 H 0.96998 * 120.00543 * 180.02562 * 16 15 13 33 33 H 1.08998 * 117.50651 * 215.00344 * 21 12 11 34 34 H 1.09007 * 117.49575 * 0.02562 * 21 12 11 35 35 H 1.09004 * 117.50100 * 359.97438 * 22 12 11 36 36 H 1.09000 * 117.49932 * 144.97481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 8 3.9716 2.6452 0.0011 7 6 5.3883 2.8324 0.0022 8 6 5.7002 4.3067 0.0020 9 8 4.8013 5.1144 0.0014 10 8 6.9763 4.7228 0.0025 11 6 7.2020 6.1572 0.0028 12 6 8.7062 6.4367 0.0039 13 6 9.4490 5.9928 1.2377 14 1 9.9416 5.0319 1.2550 15 6 9.5042 6.8158 2.3425 16 7 8.8065 7.9304 2.3679 17 14 10.5701 6.3479 3.8035 18 1 11.9854 6.2363 3.3680 19 1 10.4565 7.3917 4.8537 20 1 10.1161 5.0438 4.3500 21 6 9.4425 6.3470 -1.3343 22 6 9.1882 7.7122 -0.6902 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9565 0.7805 -0.8892 27 1 3.9558 0.7808 0.8908 28 1 5.8165 2.3707 -0.8875 29 1 5.8151 2.3704 0.8925 30 1 6.7506 6.5958 0.8927 31 1 6.7512 6.5961 -0.8872 32 1 8.8456 8.5096 3.1450 33 1 10.4640 5.9670 -1.3223 34 1 8.8550 6.0893 -2.2156 35 1 8.4337 8.3519 -1.1480 36 1 10.0423 8.2304 -0.2542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849775258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = -181.352265 kcal Electronic energy + Delta-G solvation = -20412.086448 eV Core-core repulsion = 16863.510935 eV Total energy + Delta-G solvation = -3548.575512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70610 -39.83639 -38.06327 -36.76522 -36.45607 -35.20173 -31.98197 -30.39950 -28.60488 -27.02703 -26.13118 -25.11875 -21.52290 -21.26660 -20.61554 -19.28269 -18.04552 -17.64259 -17.23613 -16.80409 -16.40693 -16.24346 -16.04099 -15.30627 -15.19441 -14.60686 -14.07603 -13.78998 -13.60828 -13.10500 -12.74805 -12.59250 -12.28729 -11.92798 -11.88879 -11.61079 -11.11071 -10.98791 -10.88265 -10.63678 -10.56916 -10.30848 -10.12518 -9.99280 -9.87831 -9.56938 -8.85383 -8.48903 -8.23672 -6.08541 -4.14508 1.89482 1.93020 2.69285 2.95253 3.29017 3.34409 3.36160 4.07646 4.37399 4.43813 4.72255 4.74839 4.79552 4.88867 4.96976 5.10079 5.15348 5.20306 5.21224 5.43992 5.96570 6.02182 6.21726 6.31286 6.49863 6.52268 6.66548 6.71152 7.01250 7.21862 7.33749 7.44597 7.49722 7.84287 8.32669 8.41506 8.86960 9.51567 11.00817 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.003393 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.047885 B = 8250.167255 C = 8741.552462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.459 3.541 4 O -0.478 6.478 5 C 0.072 3.928 6 O -0.348 6.348 7 C 0.072 3.928 8 C 0.452 3.548 9 O -0.498 6.498 10 O -0.336 6.336 11 C 0.118 3.882 12 C 0.037 3.963 13 C -0.493 4.493 14 H 0.063 0.937 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.205 4.205 22 C -0.145 4.145 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 -16.040 -5.121 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.299 3.701 4 O -0.362 6.362 5 C -0.005 4.005 6 O -0.267 6.267 7 C -0.005 4.005 8 C 0.293 3.707 9 O -0.385 6.385 10 O -0.252 6.252 11 C 0.045 3.955 12 C 0.037 3.963 13 C -0.530 4.530 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.517 5.517 17 Si 0.721 3.279 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.242 4.242 22 C -0.183 4.183 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.266 -15.104 -4.995 18.934 hybrid contribution 0.385 -0.125 0.859 0.950 sum -9.881 -15.229 -4.136 18.619 Atomic orbital electron populations 1.23297 0.75639 1.03786 1.02887 1.86440 1.23862 1.32805 1.84671 1.23188 0.91395 0.81761 0.73724 1.90757 1.66605 1.36146 1.42690 1.21667 0.88573 0.85558 1.04734 1.88031 1.20926 1.21988 1.95757 1.21752 0.81724 0.92498 1.04519 1.22821 0.82536 0.91024 0.74280 1.90684 1.47665 1.55920 1.44266 1.86469 1.25758 1.30512 1.82421 1.22964 0.98410 0.73701 1.00461 1.18773 0.88310 0.97888 0.91346 1.20346 1.32886 1.03348 0.96443 0.91858 1.25026 0.95199 0.94946 0.98293 1.69984 1.39321 1.12360 1.30032 0.86635 0.81048 0.78204 0.81989 1.20139 1.21275 1.20116 1.23013 1.01345 1.02557 0.97302 1.22553 1.02464 0.90083 1.03154 0.91704 0.87840 0.91682 0.88317 0.88242 0.88597 0.88331 0.90396 0.94131 0.92770 0.90026 0.91493 0.91575 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.37 10.57 -39.25 -0.41 -3.78 16 3 C 0.46 5.43 8.03 36.01 0.29 5.72 16 4 O -0.48 -7.81 16.25 -25.48 -0.41 -8.22 16 5 C 0.07 0.68 6.53 36.01 0.24 0.91 16 6 O -0.35 -5.11 9.41 -64.77 -0.61 -5.72 16 7 C 0.07 0.95 6.53 36.01 0.24 1.18 16 8 C 0.45 8.77 8.03 36.01 0.29 9.06 16 9 O -0.50 -11.55 16.25 -25.48 -0.41 -11.97 16 10 O -0.34 -7.20 10.16 -39.25 -0.40 -7.60 16 11 C 0.12 2.80 5.29 37.15 0.20 2.99 16 12 C 0.04 0.92 1.61 -155.66 -0.25 0.67 16 13 C -0.49 -13.26 8.77 -34.44 -0.30 -13.56 16 14 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 15 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 16 N -0.88 -24.81 12.93 55.43 0.72 -24.09 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 C -0.20 -4.39 9.96 -26.70 -0.27 -4.65 16 22 C -0.15 -3.34 9.43 -26.69 -0.25 -3.59 16 23 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 24 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 2.06 8.13 -51.93 -0.42 1.64 16 31 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -34.88 328.43 -5.50 -40.37 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.04 Total: -1.58 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 1.15 Total: 1.83 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.72 Total: -24.09 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -2.25 Total: -37.29 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.88 -5.50 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849775258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.978 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds