Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00142 * 2 1 4 4 O 1.20825 * 119.99892 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00052 * 179.97438 * 3 2 1 6 6 O 1.42901 * 109.47026 * 180.02562 * 5 3 2 7 7 C 1.42901 * 113.99881 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47226 * 179.97438 * 7 6 5 9 9 O 1.20835 * 119.99600 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00368 * 180.02562 * 8 7 6 11 11 C 1.45198 * 117.00205 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47075 * 179.97438 * 11 10 8 13 13 C 1.50701 * 115.55544 * 294.88682 * 12 11 10 14 14 H 1.07995 * 119.99892 * 95.15843 * 13 12 11 15 15 C 1.37875 * 119.99625 * 274.89404 * 13 12 11 16 16 N 1.31516 * 120.00645 * 6.38641 * 15 13 12 17 17 Si 1.86804 * 119.99966 * 186.39037 * 15 13 12 18 18 H 1.48497 * 109.46911 * 59.99497 * 17 15 13 19 19 H 1.48501 * 109.47278 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46934 * 299.99733 * 17 15 13 21 21 C 1.52999 * 117.50107 * 80.55676 * 12 11 10 22 22 C 1.53002 * 117.49851 * 149.21518 * 12 11 10 23 23 H 1.08996 * 109.46369 * 60.00153 * 1 2 3 24 24 H 1.09001 * 109.46557 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47108 * 299.99963 * 1 2 3 26 26 H 1.09003 * 109.47280 * 60.00214 * 5 3 2 27 27 H 1.09002 * 109.47023 * 300.00455 * 5 3 2 28 28 H 1.09004 * 109.47136 * 60.00321 * 7 6 5 29 29 H 1.08998 * 109.47150 * 300.00274 * 7 6 5 30 30 H 1.09001 * 109.46840 * 59.99792 * 11 10 8 31 31 H 1.09000 * 109.47129 * 299.99899 * 11 10 8 32 32 H 0.96998 * 120.00543 * 180.02562 * 16 15 13 33 33 H 1.08998 * 117.50651 * 215.00344 * 21 12 11 34 34 H 1.09007 * 117.49575 * 0.02562 * 21 12 11 35 35 H 1.09004 * 117.50100 * 359.97438 * 22 12 11 36 36 H 1.09000 * 117.49932 * 144.97481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 8 3.9716 2.6452 0.0011 7 6 5.3883 2.8324 0.0022 8 6 5.7002 4.3067 0.0020 9 8 4.8013 5.1144 0.0014 10 8 6.9763 4.7228 0.0025 11 6 7.2020 6.1572 0.0028 12 6 8.7062 6.4367 0.0039 13 6 9.4490 5.9928 1.2377 14 1 9.9416 5.0319 1.2550 15 6 9.5042 6.8158 2.3425 16 7 8.8065 7.9304 2.3679 17 14 10.5701 6.3479 3.8035 18 1 11.9854 6.2363 3.3680 19 1 10.4565 7.3917 4.8537 20 1 10.1161 5.0438 4.3500 21 6 9.4425 6.3470 -1.3343 22 6 9.1882 7.7122 -0.6902 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9565 0.7805 -0.8892 27 1 3.9558 0.7808 0.8908 28 1 5.8165 2.3707 -0.8875 29 1 5.8151 2.3704 0.8925 30 1 6.7506 6.5958 0.8927 31 1 6.7512 6.5961 -0.8872 32 1 8.8456 8.5096 3.1450 33 1 10.4640 5.9670 -1.3223 34 1 8.8550 6.0893 -2.2156 35 1 8.4337 8.3519 -1.1480 36 1 10.0423 8.2304 -0.2542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849775258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = -203.649647 kcal Electronic energy + Delta-G solvation = -20413.053335 eV Core-core repulsion = 16863.510935 eV Total energy + Delta-G solvation = -3549.542399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61604 -41.35258 -39.15398 -38.39469 -37.44944 -36.90380 -34.01955 -31.33011 -29.70389 -28.28241 -27.46809 -26.87368 -23.01591 -22.34532 -22.10527 -21.19145 -19.04081 -18.83713 -18.36928 -18.10902 -17.69218 -17.50437 -17.22296 -16.74138 -16.59978 -16.28866 -15.62670 -14.99866 -14.66836 -14.47572 -14.00456 -13.92429 -13.60242 -13.29860 -13.14902 -12.93030 -12.86179 -12.77462 -12.40502 -12.08171 -11.86615 -11.69556 -11.67922 -11.55346 -11.33864 -10.96486 -10.77750 -10.48642 -10.08425 -8.12993 -6.24986 1.00994 1.06911 1.19914 1.44632 1.45668 1.53354 1.79641 2.43503 3.06213 3.16336 3.42304 3.66493 3.78463 4.12976 4.16520 4.17520 4.21847 4.27899 4.30511 4.33079 4.38595 4.47844 4.65904 4.69848 4.82527 4.97782 5.18891 5.25573 5.44674 5.58387 5.67055 5.72553 5.75869 6.35791 6.66949 6.80735 6.82051 7.44346 8.95780 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.003393 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.047885 B = 8250.167255 C = 8741.552462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.458 3.542 4 O -0.537 6.537 5 C 0.069 3.931 6 O -0.394 6.394 7 C 0.084 3.916 8 C 0.444 3.556 9 O -0.546 6.546 10 O -0.339 6.339 11 C 0.129 3.871 12 C 0.004 3.996 13 C -0.505 4.505 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.913 5.913 17 Si 0.955 3.045 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.269 1.269 21 C -0.173 4.173 22 C -0.151 4.151 23 H 0.059 0.941 24 H 0.140 0.860 25 H 0.058 0.942 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.261 0.739 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -18.978 -5.611 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.302 3.698 4 O -0.426 6.426 5 C -0.007 4.007 6 O -0.314 6.314 7 C 0.008 3.992 8 C 0.288 3.712 9 O -0.437 6.437 10 O -0.255 6.255 11 C 0.056 3.944 12 C 0.004 3.996 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.180 4.180 16 N -0.550 5.550 17 Si 0.780 3.220 18 H -0.192 1.192 19 H -0.215 1.215 20 H -0.194 1.194 21 C -0.210 4.210 22 C -0.188 4.188 23 H 0.078 0.922 24 H 0.158 0.842 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.343 -18.106 -5.497 21.103 hybrid contribution 0.007 0.693 0.978 1.198 sum -9.336 -17.413 -4.520 20.268 Atomic orbital electron populations 1.23586 0.74430 1.06007 1.02383 1.86448 1.25087 1.31455 1.83905 1.23871 0.92575 0.81453 0.71918 1.90740 1.68012 1.38056 1.45749 1.22087 0.86695 0.83521 1.08426 1.87956 1.21650 1.25499 1.96288 1.21926 0.81740 0.87332 1.08170 1.24256 0.81009 0.93775 0.72168 1.90663 1.48597 1.57891 1.46521 1.86468 1.27486 1.28798 1.82710 1.22536 0.97828 0.75313 0.98770 1.18869 0.88742 0.99537 0.92473 1.20653 1.32801 1.03268 0.97565 0.92047 1.25782 0.96320 0.94949 1.00950 1.70112 1.40771 1.13438 1.30687 0.85662 0.79673 0.77915 0.78728 1.19221 1.21459 1.19386 1.23027 1.01518 1.00194 0.96272 1.22498 1.02127 0.90615 1.03605 0.92188 0.84191 0.92361 0.84099 0.84574 0.84023 0.84992 0.94418 0.93495 0.93060 0.89254 0.88938 0.90665 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -5.90 10.57 -51.39 -0.54 -6.44 16 3 C 0.46 10.24 8.03 71.24 0.57 10.81 16 4 O -0.54 -17.87 16.25 28.40 0.46 -17.41 16 5 C 0.07 1.06 6.53 71.24 0.47 1.52 16 6 O -0.39 -10.76 9.41 -120.73 -1.14 -11.90 16 7 C 0.08 1.94 6.53 71.24 0.47 2.41 16 8 C 0.44 16.94 8.03 71.24 0.57 17.51 16 9 O -0.55 -26.00 16.25 28.37 0.46 -25.54 16 10 O -0.34 -14.34 10.16 -51.40 -0.52 -14.86 16 11 C 0.13 6.25 5.29 71.98 0.38 6.63 16 12 C 0.00 0.21 1.61 -52.93 -0.08 0.12 16 13 C -0.51 -27.15 8.77 25.60 0.22 -26.93 16 14 H 0.06 3.23 7.82 -2.91 -0.02 3.21 16 15 C 0.02 1.10 5.39 84.65 0.46 1.55 16 16 N -0.91 -52.54 12.93 21.45 0.28 -52.26 16 17 Si 0.95 42.69 29.54 68.60 2.03 44.71 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 C -0.17 -7.09 9.96 30.62 0.30 -6.79 16 22 C -0.15 -6.94 9.43 30.62 0.29 -6.65 16 23 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 24 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 26 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.05 2.15 8.09 -2.39 -0.02 2.13 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 35 H 0.07 3.25 8.14 -2.38 -0.02 3.23 16 36 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -79.75 328.43 6.94 -72.81 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.08 Total: 9.13 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.84 Total: 1.76 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.28 Total: -52.26 kcal Atomic # 8 Polarization: -74.87 SS G_CDS: -1.28 Total: -76.15 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -79.75 6.94 -72.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849775258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.844 kcal (2) G-P(sol) polarization free energy of solvation -79.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds