Wall clock time and date at job start Mon Mar 30 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99688 * 2 1 4 4 H 1.48497 * 109.47622 * 270.00409 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00599 * 3 2 1 6 6 H 1.48501 * 109.46785 * 150.00206 * 3 2 1 7 7 C 1.37872 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00189 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47120 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.81398 * 102.99968 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46435 * 174.99927 * 12 11 10 14 14 C 1.53020 * 109.45534 * 180.17758 * 13 12 11 15 15 C 1.52954 * 109.45224 * 300.20648 * 14 13 12 16 16 C 1.52950 * 109.82559 * 59.64929 * 15 14 13 17 17 C 1.52994 * 109.46694 * 295.02435 * 12 11 10 18 18 O 1.43697 * 109.42789 * 179.81482 * 15 14 13 19 19 C 1.44793 * 104.79770 * 95.47626 * 18 15 14 20 20 C 1.54916 * 101.72786 * 36.06725 * 19 18 15 21 21 O 1.43318 * 109.61955 * 299.12378 * 15 14 13 22 22 H 0.96999 * 120.00053 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47269 * 59.99908 * 9 7 2 24 24 H 1.08995 * 109.47425 * 299.99795 * 9 7 2 25 25 H 1.09007 * 109.46796 * 60.00021 * 10 9 7 26 26 H 1.08995 * 109.47133 * 300.00376 * 10 9 7 27 27 H 1.08996 * 109.46572 * 55.01167 * 12 11 10 28 28 H 1.09000 * 109.47380 * 300.17474 * 13 12 11 29 29 H 1.08996 * 109.47129 * 60.18560 * 13 12 11 30 30 H 1.09007 * 109.47282 * 60.20248 * 14 13 12 31 31 H 1.09004 * 109.47009 * 180.20732 * 14 13 12 32 32 H 1.09005 * 109.47160 * 180.37259 * 16 15 14 33 33 H 1.09000 * 109.47593 * 60.36588 * 16 15 14 34 34 H 1.09000 * 109.47173 * 299.83568 * 17 12 11 35 35 H 1.08998 * 109.47147 * 59.82898 * 17 12 11 36 36 H 1.09004 * 110.98062 * 277.95860 * 19 18 15 37 37 H 1.09003 * 111.01126 * 154.18986 * 19 18 15 38 38 H 1.08996 * 110.69565 * 206.07714 * 20 19 18 39 39 H 1.09003 * 110.69162 * 82.86990 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 16 5.8356 -2.6364 -0.0009 12 6 6.2437 -4.4039 -0.0016 13 6 7.7587 -4.5773 -0.1273 14 6 8.1023 -6.0684 -0.1323 15 6 7.6177 -6.7072 1.1702 16 6 6.1043 -6.5302 1.3031 17 6 5.7638 -5.0385 1.3052 18 8 7.9367 -8.1083 1.1631 19 6 9.1935 -8.2050 1.8757 20 6 9.0228 -7.1160 2.9643 21 8 8.2748 -6.0882 2.2834 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6802 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.6579 -3.1505 -0.8908 26 1 3.6586 -3.1501 0.8892 27 1 5.7513 -4.8901 -0.8437 28 1 8.1006 -4.1225 -1.0570 29 1 8.2510 -4.0938 0.7164 30 1 7.6127 -6.5514 -0.9781 31 1 9.1819 -6.1922 -0.2182 32 1 5.7662 -6.9814 2.2360 33 1 5.6065 -7.0153 0.4634 34 1 6.2582 -4.5542 2.1473 35 1 4.6850 -4.9121 1.3958 36 1 10.0328 -7.9730 1.2200 37 1 9.3130 -9.1907 2.3253 38 1 9.9930 -6.7374 3.2858 39 1 8.4593 -7.5045 3.8126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849936620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:06 Heat of formation + Delta-G solvation = -113.202898 kcal Electronic energy + Delta-G solvation = -19096.731077 eV Core-core repulsion = 16129.696708 eV Total energy + Delta-G solvation = -2967.034368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06550 -37.13077 -35.22740 -33.69357 -31.35345 -31.03411 -30.78983 -28.14034 -25.54046 -23.72489 -22.89673 -22.39713 -20.71200 -19.82874 -17.43233 -17.02702 -16.93617 -16.10192 -15.78346 -15.22728 -14.41684 -14.38664 -14.06919 -13.88738 -13.79881 -13.52457 -13.06534 -12.95723 -12.68878 -12.60671 -12.36282 -11.87231 -11.73950 -11.40666 -11.27882 -11.15302 -11.01653 -10.65960 -10.46143 -10.26567 -9.99433 -9.68994 -9.64009 -9.41090 -9.12265 -8.57493 -7.20490 -6.08528 -4.08242 2.13451 3.09858 3.19479 3.31837 3.38926 3.44990 3.66144 4.23075 4.41355 4.43583 4.47589 4.57528 4.77074 4.90978 4.96799 5.03623 5.19968 5.22475 5.25686 5.28050 5.32945 5.43194 5.55117 5.65064 5.73170 5.82228 5.91526 5.99820 6.04675 6.05845 6.16965 6.33837 6.59725 6.86486 7.14910 7.27274 7.68719 8.45456 8.93323 9.52478 11.04289 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.044724 B = 0.003514 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.911464 B = 7967.266318 C = 8142.700462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.050 4.050 11 S -0.293 6.293 12 C -0.054 4.054 13 C -0.091 4.091 14 C -0.130 4.130 15 C 0.258 3.742 16 C -0.116 4.116 17 C -0.108 4.108 18 O -0.373 6.373 19 C 0.015 3.985 20 C 0.019 3.981 21 O -0.368 6.368 22 H 0.265 0.735 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.015 -16.538 3.489 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.198 4.198 11 S -0.061 6.061 12 C -0.182 4.182 13 C -0.130 4.130 14 C -0.169 4.169 15 C 0.182 3.818 16 C -0.155 4.155 17 C -0.148 4.148 18 O -0.294 6.294 19 C -0.062 4.062 20 C -0.058 4.058 21 O -0.289 6.289 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.403 -15.459 3.422 25.826 hybrid contribution -0.376 -0.281 -0.003 0.469 sum 20.027 -15.739 3.419 25.700 Atomic orbital electron populations 1.69903 1.06275 1.27082 1.50644 1.24965 0.94739 0.99175 0.94266 0.86781 0.80500 0.83426 0.78729 1.20110 1.21229 1.18752 1.20975 0.88556 0.94722 1.51716 0.90858 1.19364 0.97043 0.89708 0.97499 1.23460 0.88111 1.04338 1.03849 1.86785 1.12599 1.08836 1.97928 1.23083 0.99251 0.95423 1.00492 1.21236 0.93308 0.94866 1.03560 1.22112 1.01741 0.96478 0.96585 1.23380 0.93453 0.77686 0.87318 1.21826 0.92364 0.97837 1.03513 1.21803 1.01941 0.93507 0.97510 1.89262 1.38338 1.24732 1.77026 1.24363 0.87622 1.01039 0.93153 1.24188 0.97337 0.88362 0.95920 1.88956 1.65459 1.32402 1.42084 0.92565 0.95594 0.96087 0.90957 0.90767 0.89894 0.90705 0.90213 0.90017 0.91026 0.90622 0.90195 0.89837 0.90787 0.90741 0.87516 0.88366 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 0.07 4.05 -27.88 -0.11 -0.05 16 10 C -0.05 -1.02 5.57 37.16 0.21 -0.81 16 11 S -0.29 -5.24 21.15 -107.50 -2.27 -7.52 16 12 C -0.05 -0.74 2.65 -26.73 -0.07 -0.81 16 13 C -0.09 -1.10 5.07 -26.72 -0.14 -1.23 16 14 C -0.13 -1.35 5.28 -26.74 -0.14 -1.49 16 15 C 0.26 2.85 1.02 -26.78 -0.03 2.82 16 16 C -0.12 -1.33 5.33 -26.75 -0.14 -1.48 16 17 C -0.11 -1.44 4.97 -26.73 -0.13 -1.57 16 18 O -0.37 -3.98 10.99 -59.04 -0.65 -4.63 16 19 C 0.01 0.10 7.91 38.17 0.30 0.41 16 20 C 0.02 0.14 8.08 38.17 0.31 0.45 16 21 O -0.37 -4.18 9.62 -59.04 -0.57 -4.75 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 24 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 25 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 26 H 0.07 1.48 7.14 -51.93 -0.37 1.11 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.04 7.72 -51.93 -0.40 0.64 16 30 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.19 7.72 -51.93 -0.40 0.79 16 35 H 0.07 1.03 6.91 -51.93 -0.36 0.67 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -31.64 319.11 -9.49 -41.12 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.53 Total: -2.36 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.38 Total: -17.01 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.22 Total: -9.38 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.27 Total: -7.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.64 -9.49 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849936620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.079 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds