Wall clock time and date at job start Mon Mar 30 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99688 * 2 1 4 4 H 1.48497 * 109.47622 * 270.00409 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00599 * 3 2 1 6 6 H 1.48501 * 109.46785 * 150.00206 * 3 2 1 7 7 C 1.37872 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00189 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47120 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.81398 * 102.99968 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46435 * 174.99927 * 12 11 10 14 14 C 1.53020 * 109.45534 * 180.17758 * 13 12 11 15 15 C 1.52954 * 109.45224 * 300.20648 * 14 13 12 16 16 C 1.52950 * 109.82559 * 59.64929 * 15 14 13 17 17 C 1.52994 * 109.46694 * 295.02435 * 12 11 10 18 18 O 1.43697 * 109.42789 * 179.81482 * 15 14 13 19 19 C 1.44793 * 104.79770 * 95.47626 * 18 15 14 20 20 C 1.54916 * 101.72786 * 36.06725 * 19 18 15 21 21 O 1.43318 * 109.61955 * 299.12378 * 15 14 13 22 22 H 0.96999 * 120.00053 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47269 * 59.99908 * 9 7 2 24 24 H 1.08995 * 109.47425 * 299.99795 * 9 7 2 25 25 H 1.09007 * 109.46796 * 60.00021 * 10 9 7 26 26 H 1.08995 * 109.47133 * 300.00376 * 10 9 7 27 27 H 1.08996 * 109.46572 * 55.01167 * 12 11 10 28 28 H 1.09000 * 109.47380 * 300.17474 * 13 12 11 29 29 H 1.08996 * 109.47129 * 60.18560 * 13 12 11 30 30 H 1.09007 * 109.47282 * 60.20248 * 14 13 12 31 31 H 1.09004 * 109.47009 * 180.20732 * 14 13 12 32 32 H 1.09005 * 109.47160 * 180.37259 * 16 15 14 33 33 H 1.09000 * 109.47593 * 60.36588 * 16 15 14 34 34 H 1.09000 * 109.47173 * 299.83568 * 17 12 11 35 35 H 1.08998 * 109.47147 * 59.82898 * 17 12 11 36 36 H 1.09004 * 110.98062 * 277.95860 * 19 18 15 37 37 H 1.09003 * 111.01126 * 154.18986 * 19 18 15 38 38 H 1.08996 * 110.69565 * 206.07714 * 20 19 18 39 39 H 1.09003 * 110.69162 * 82.86990 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 16 5.8356 -2.6364 -0.0009 12 6 6.2437 -4.4039 -0.0016 13 6 7.7587 -4.5773 -0.1273 14 6 8.1023 -6.0684 -0.1323 15 6 7.6177 -6.7072 1.1702 16 6 6.1043 -6.5302 1.3031 17 6 5.7638 -5.0385 1.3052 18 8 7.9367 -8.1083 1.1631 19 6 9.1935 -8.2050 1.8757 20 6 9.0228 -7.1160 2.9643 21 8 8.2748 -6.0882 2.2834 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6802 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.6579 -3.1505 -0.8908 26 1 3.6586 -3.1501 0.8892 27 1 5.7513 -4.8901 -0.8437 28 1 8.1006 -4.1225 -1.0570 29 1 8.2510 -4.0938 0.7164 30 1 7.6127 -6.5514 -0.9781 31 1 9.1819 -6.1922 -0.2182 32 1 5.7662 -6.9814 2.2360 33 1 5.6065 -7.0153 0.4634 34 1 6.2582 -4.5542 2.1473 35 1 4.6850 -4.9121 1.3958 36 1 10.0328 -7.9730 1.2200 37 1 9.3130 -9.1907 2.3253 38 1 9.9930 -6.7374 3.2858 39 1 8.4593 -7.5045 3.8126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849936620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:05 Heat of formation + Delta-G solvation = -131.925251 kcal Electronic energy + Delta-G solvation = -19097.542939 eV Core-core repulsion = 16129.696708 eV Total energy + Delta-G solvation = -2967.846230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81659 -38.05807 -35.97097 -35.77322 -33.32490 -32.03306 -31.63800 -28.92363 -27.55115 -24.40277 -23.87506 -23.38346 -22.53535 -20.78644 -19.14274 -18.14639 -17.75432 -17.29299 -16.59747 -16.43462 -16.08200 -15.69768 -15.34654 -15.05853 -14.86565 -14.75874 -14.36835 -13.93410 -13.80067 -13.71097 -13.44841 -13.34976 -13.05296 -12.80959 -12.40549 -12.27789 -12.16167 -12.07287 -11.86646 -11.71544 -11.58998 -11.21845 -11.09074 -10.81562 -10.72922 -10.41679 -8.65310 -8.34287 -6.39818 0.75631 1.34677 1.36143 1.48920 1.70308 2.33047 2.46574 2.92442 3.00776 3.49025 3.57879 3.72723 3.89015 3.96917 4.11317 4.18687 4.20185 4.24202 4.27323 4.28623 4.41028 4.45650 4.61053 4.70700 4.71261 4.77365 4.84719 4.94269 5.00765 5.03634 5.08762 5.16375 5.20318 5.29919 5.31913 5.52675 6.15426 6.18409 6.65689 7.24845 8.81853 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.044724 B = 0.003514 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.911464 B = 7967.266318 C = 8142.700462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.532 4.532 8 H 0.039 0.961 9 C 0.009 3.991 10 C -0.046 4.046 11 S -0.304 6.304 12 C -0.042 4.042 13 C -0.084 4.084 14 C -0.124 4.124 15 C 0.258 3.742 16 C -0.114 4.114 17 C -0.103 4.103 18 O -0.389 6.389 19 C 0.012 3.988 20 C 0.011 3.989 21 O -0.391 6.391 22 H 0.269 0.731 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.639 -17.103 3.412 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.571 4.571 8 H 0.057 0.943 9 C -0.030 4.030 10 C -0.194 4.194 11 S -0.073 6.073 12 C -0.171 4.171 13 C -0.123 4.123 14 C -0.163 4.163 15 C 0.181 3.819 16 C -0.154 4.154 17 C -0.142 4.142 18 O -0.310 6.310 19 C -0.063 4.063 20 C -0.065 4.065 21 O -0.312 6.312 22 H 0.078 0.922 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.148 0.852 38 H 0.137 0.863 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 23.036 -16.037 3.349 28.267 hybrid contribution -1.159 -0.254 0.068 1.189 sum 21.877 -16.291 3.418 27.489 Atomic orbital electron populations 1.70038 1.08100 1.28386 1.51983 1.25906 0.95599 1.03274 0.93807 0.85702 0.79403 0.78498 0.79397 1.18938 1.20418 1.17593 1.21280 0.90938 0.93589 1.51325 0.94276 1.19203 0.94318 0.92321 0.97138 1.23152 0.90733 1.01733 1.03807 1.86707 1.09458 1.13188 1.97982 1.23220 1.00840 0.91942 1.01098 1.21185 0.91355 0.96310 1.03457 1.22078 1.02846 0.94805 0.96596 1.23300 0.92754 0.78216 0.87626 1.21788 0.93535 0.96181 1.03857 1.21692 1.00953 0.94856 0.96720 1.89238 1.40071 1.24161 1.77541 1.24620 0.86644 1.02116 0.92964 1.24437 0.98001 0.88034 0.95993 1.88936 1.65965 1.33854 1.42477 0.92200 0.95924 0.95963 0.91003 0.90946 0.89125 0.90046 0.91164 0.89287 0.89417 0.90548 0.89622 0.90968 0.92023 0.89415 0.85228 0.86318 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.01 0.71 5.47 84.65 0.46 1.18 16 3 Si 0.95 45.25 27.47 68.60 1.88 47.14 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 7 C -0.53 -31.18 9.66 25.60 0.25 -30.93 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 9 C 0.01 0.43 4.05 29.85 0.12 0.55 16 10 C -0.05 -1.90 5.57 71.98 0.40 -1.50 16 11 S -0.30 -10.64 21.15 -56.49 -1.19 -11.84 16 12 C -0.04 -1.12 2.65 30.59 0.08 -1.04 16 13 C -0.08 -1.86 5.07 30.60 0.16 -1.70 16 14 C -0.12 -2.26 5.28 30.59 0.16 -2.10 16 15 C 0.26 5.18 1.02 30.56 0.03 5.22 16 16 C -0.11 -2.49 5.33 30.58 0.16 -2.33 16 17 C -0.10 -2.67 4.97 30.59 0.15 -2.51 16 18 O -0.39 -7.37 10.99 -126.22 -1.39 -8.76 16 19 C 0.01 0.14 7.91 72.64 0.57 0.71 16 20 C 0.01 0.14 8.08 72.64 0.59 0.73 16 21 O -0.39 -8.18 9.62 -126.22 -1.21 -9.39 16 22 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 23 H 0.02 1.12 7.20 -2.38 -0.02 1.10 16 24 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 25 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.07 2.95 7.14 -2.39 -0.02 2.94 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.71 7.72 -2.39 -0.02 1.69 16 30 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.04 7.72 -2.39 -0.02 2.02 16 35 H 0.06 1.73 6.91 -2.39 -0.02 1.71 16 36 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.28 319.11 2.48 -65.80 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.95 Total: 9.96 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 3.14 Total: -33.73 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.30 Total: -59.19 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -2.60 Total: -18.15 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.19 Total: -11.84 kcal Total: -68.28 2.48 -65.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849936620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.123 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds