Wall clock time and date at job start Mon Mar 30 2020 01:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31156 * 1 3 3 Cl 1.73598 * 119.99940 * 2 1 4 4 C 1.50702 * 119.99972 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.46825 * 114.99774 * 4 2 1 6 6 C 1.34772 * 119.99901 * 179.97438 * 5 4 2 7 7 O 1.21588 * 120.00242 * 4.99336 * 6 5 4 8 8 N 1.34781 * 120.00290 * 184.98536 * 6 5 4 9 9 C 1.46932 * 120.62890 * 354.77433 * 8 6 5 10 10 C 1.53189 * 108.89180 * 233.56317 * 9 8 6 11 11 C 1.53078 * 109.29453 * 305.57472 * 10 9 8 12 12 C 1.53042 * 109.65463 * 61.15799 * 11 10 9 13 13 H 1.08998 * 109.49921 * 58.65509 * 12 11 10 14 14 C 1.50699 * 109.49173 * 178.74692 * 12 11 10 15 15 H 1.08003 * 120.00625 * 359.84130 * 14 12 11 16 16 C 1.37884 * 119.99631 * 179.83624 * 14 12 11 17 17 N 1.31510 * 120.00076 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99717 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47323 * 60.00217 * 18 16 14 20 20 H 1.48505 * 109.46679 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47256 * 300.00094 * 18 16 14 22 22 C 1.46917 * 120.63402 * 174.79984 * 8 6 5 23 23 H 1.08008 * 120.00044 * 180.02562 * 1 2 3 24 24 H 1.08003 * 120.00417 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46990 * 355.00231 * 4 2 1 26 26 H 1.08999 * 109.47460 * 234.99963 * 4 2 1 27 27 H 0.97003 * 120.00283 * 0.02562 * 5 4 2 28 28 H 1.09007 * 109.58263 * 353.41987 * 9 8 6 29 29 H 1.08997 * 109.58421 * 113.69837 * 9 8 6 30 30 H 1.08997 * 109.50207 * 65.38913 * 10 9 8 31 31 H 1.09001 * 109.49261 * 185.48278 * 10 9 8 32 32 H 1.09003 * 109.34539 * 301.13385 * 11 10 9 33 33 H 1.08995 * 109.43884 * 181.24029 * 11 10 9 34 34 H 0.96998 * 119.99728 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.59125 * 246.15685 * 22 8 6 36 36 H 1.09005 * 109.58783 * 6.58406 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8147 -1.4367 -1.2512 6 6 3.5678 -2.5320 -1.4738 7 8 3.5542 -3.4511 -0.6779 8 7 4.3359 -2.6087 -2.5786 9 6 4.2771 -1.5595 -3.6055 10 6 4.0006 -2.2104 -4.9644 11 6 5.0485 -3.2945 -5.2286 12 6 4.9583 -4.3724 -4.1459 13 1 3.9569 -4.8029 -4.1437 14 6 5.9705 -5.4530 -4.4266 15 1 6.6124 -5.3802 -5.2921 16 6 6.0772 -6.5347 -3.5782 17 7 5.2953 -6.6237 -2.5245 18 14 7.3323 -7.8739 -3.9257 19 1 8.6957 -7.2854 -3.9299 20 1 7.2465 -8.9179 -2.8730 21 1 7.0522 -8.4832 -5.2506 22 6 5.2474 -3.7433 -2.7794 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5401 0.9353 0.0004 25 1 1.3601 -2.1316 0.0905 26 1 2.7572 -1.3247 0.8424 27 1 2.7696 -0.7351 -1.9196 28 1 3.4771 -0.8587 -3.3665 29 1 5.2287 -1.0293 -3.6411 30 1 3.0080 -2.6607 -4.9570 31 1 4.0514 -1.4536 -5.7473 32 1 6.0424 -2.8472 -5.2138 33 1 4.8672 -3.7442 -6.2047 34 1 5.3702 -7.3848 -1.9280 35 1 6.2791 -3.3929 -2.7493 36 1 5.0877 -4.4835 -1.9953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852123358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:01 Heat of formation + Delta-G solvation = -19.351079 kcal Electronic energy + Delta-G solvation = -19143.375068 eV Core-core repulsion = 16074.826370 eV Total energy + Delta-G solvation = -3068.548698 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73068 -37.40039 -36.71299 -35.02690 -33.45117 -32.36593 -31.56085 -29.69803 -26.58561 -25.01763 -23.89677 -21.80469 -20.54094 -20.05962 -18.75723 -17.59035 -16.44616 -16.01800 -15.63084 -14.77703 -14.63375 -14.34195 -13.82517 -13.67439 -13.40644 -13.00137 -12.68236 -12.54945 -12.37080 -12.06435 -11.91132 -11.79952 -11.04515 -10.95120 -10.87822 -10.50183 -10.38882 -10.19928 -9.84822 -9.63781 -9.37392 -9.06902 -8.92522 -8.80124 -8.38706 -7.62362 -5.94937 -4.04319 1.50338 1.97234 3.29149 3.36082 3.40610 3.41963 3.83584 4.34169 4.40903 4.49231 5.25311 5.29626 5.34596 5.35473 5.51856 5.57832 5.67294 5.79586 5.96607 6.00235 6.18042 6.33796 6.60166 6.68557 6.72808 6.82496 7.01437 7.06413 7.37235 7.51333 7.77027 7.95943 8.09352 8.44170 8.58212 8.99039 9.24430 9.61050 11.09933 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.004367 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.361038 B = 6410.898323 C = 6946.127770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 Cl -0.084 7.084 4 C 0.179 3.821 5 N -0.755 5.755 6 C 0.701 3.299 7 O -0.581 6.581 8 N -0.621 5.621 9 C 0.116 3.884 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.128 3.872 23 H 0.128 0.872 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.393 0.607 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.039 0.961 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 15.494 2.298 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 Cl -0.056 7.056 4 C 0.054 3.946 5 N -0.416 5.416 6 C 0.403 3.597 7 O -0.458 6.458 8 N -0.357 5.357 9 C -0.009 4.009 10 C -0.172 4.172 11 C -0.147 4.147 12 C 0.020 3.980 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.008 3.992 23 H 0.146 0.854 24 H 0.133 0.867 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.229 0.771 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.128 14.783 3.071 17.148 hybrid contribution 0.645 -0.139 -0.517 0.838 sum -7.483 14.644 2.554 16.643 Atomic orbital electron populations 1.24172 0.93671 1.04104 0.97340 1.23526 0.94132 0.87942 1.05864 1.98384 1.78144 1.32197 1.96882 1.20158 0.95157 0.91407 0.87863 1.45279 1.52600 1.22981 1.20693 1.15909 0.78957 0.82127 0.82719 1.90937 1.69429 1.37768 1.47695 1.47774 1.43529 1.25827 1.18614 1.21489 1.00342 0.89913 0.89125 1.21952 1.00800 0.98942 0.95477 1.21620 0.96664 0.96154 1.00293 1.18976 0.97875 0.91696 0.89407 0.95333 1.21040 1.19941 1.04879 1.10263 0.92454 1.25055 0.95816 0.98003 0.95112 1.69890 1.37734 1.30332 1.13624 0.86666 0.81896 0.81621 0.77852 1.20261 1.21276 1.20327 1.22201 0.88430 0.85274 1.03338 0.85421 0.86694 0.89558 0.90288 0.77076 0.92247 0.92118 0.92218 0.92288 0.93213 0.93077 0.92615 0.94215 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 14.04 28.97 0.41 -0.78 16 2 C -0.09 -0.87 5.87 -36.07 -0.21 -1.08 16 3 Cl -0.08 -0.86 28.99 -51.86 -1.50 -2.36 16 4 C 0.18 2.30 5.99 -5.19 -0.03 2.27 16 5 N -0.76 -11.46 5.46 -66.41 -0.36 -11.82 16 6 C 0.70 14.44 8.29 -86.92 -0.72 13.72 16 7 O -0.58 -14.62 15.77 5.29 0.08 -14.54 16 8 N -0.62 -12.69 2.97 -178.50 -0.53 -13.22 16 9 C 0.12 1.82 6.38 -3.71 -0.02 1.80 16 10 C -0.13 -2.16 6.09 -26.59 -0.16 -2.32 16 11 C -0.11 -2.19 5.10 -26.67 -0.14 -2.33 16 12 C 0.04 0.99 2.26 -91.65 -0.21 0.78 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.52 -14.25 8.56 -34.44 -0.29 -14.55 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -25.88 11.39 55.43 0.63 -25.25 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.13 3.15 5.41 -3.72 -0.02 3.13 16 23 H 0.13 0.85 7.84 -52.48 -0.41 0.44 16 24 H 0.11 0.73 8.06 -52.48 -0.42 0.30 16 25 H 0.09 1.12 7.79 -51.93 -0.40 0.72 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.39 5.10 5.95 -40.82 -0.24 4.86 16 28 H 0.06 0.76 5.65 -51.92 -0.29 0.46 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.12 3.56 5.11 -51.93 -0.27 3.29 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -31.67 310.34 -8.48 -40.16 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.96 Total: 3.70 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.49 Total: 2.31 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.26 Total: -50.29 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.67 -8.48 -40.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852123358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.806 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds