Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31156 * 1 3 3 Cl 1.73598 * 119.99940 * 2 1 4 4 C 1.50702 * 119.99972 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.46825 * 114.99774 * 4 2 1 6 6 C 1.34772 * 119.99901 * 179.97438 * 5 4 2 7 7 O 1.21588 * 120.00242 * 4.99336 * 6 5 4 8 8 N 1.34781 * 120.00290 * 184.98536 * 6 5 4 9 9 C 1.46932 * 120.62890 * 354.77433 * 8 6 5 10 10 C 1.53189 * 108.89180 * 233.56317 * 9 8 6 11 11 C 1.53078 * 109.29453 * 305.57472 * 10 9 8 12 12 C 1.53042 * 109.65463 * 61.15799 * 11 10 9 13 13 H 1.08998 * 109.49921 * 58.65509 * 12 11 10 14 14 C 1.50699 * 109.49173 * 178.74692 * 12 11 10 15 15 H 1.08003 * 120.00625 * 359.84130 * 14 12 11 16 16 C 1.37884 * 119.99631 * 179.83624 * 14 12 11 17 17 N 1.31510 * 120.00076 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99717 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47323 * 60.00217 * 18 16 14 20 20 H 1.48505 * 109.46679 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47256 * 300.00094 * 18 16 14 22 22 C 1.46917 * 120.63402 * 174.79984 * 8 6 5 23 23 H 1.08008 * 120.00044 * 180.02562 * 1 2 3 24 24 H 1.08003 * 120.00417 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46990 * 355.00231 * 4 2 1 26 26 H 1.08999 * 109.47460 * 234.99963 * 4 2 1 27 27 H 0.97003 * 120.00283 * 0.02562 * 5 4 2 28 28 H 1.09007 * 109.58263 * 353.41987 * 9 8 6 29 29 H 1.08997 * 109.58421 * 113.69837 * 9 8 6 30 30 H 1.08997 * 109.50207 * 65.38913 * 10 9 8 31 31 H 1.09001 * 109.49261 * 185.48278 * 10 9 8 32 32 H 1.09003 * 109.34539 * 301.13385 * 11 10 9 33 33 H 1.08995 * 109.43884 * 181.24029 * 11 10 9 34 34 H 0.96998 * 119.99728 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.59125 * 246.15685 * 22 8 6 36 36 H 1.09005 * 109.58783 * 6.58406 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1795 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8147 -1.4367 -1.2512 6 6 3.5678 -2.5320 -1.4738 7 8 3.5542 -3.4511 -0.6779 8 7 4.3359 -2.6087 -2.5786 9 6 4.2771 -1.5595 -3.6055 10 6 4.0006 -2.2104 -4.9644 11 6 5.0485 -3.2945 -5.2286 12 6 4.9583 -4.3724 -4.1459 13 1 3.9569 -4.8029 -4.1437 14 6 5.9705 -5.4530 -4.4266 15 1 6.6124 -5.3802 -5.2921 16 6 6.0772 -6.5347 -3.5782 17 7 5.2953 -6.6237 -2.5245 18 14 7.3323 -7.8739 -3.9257 19 1 8.6957 -7.2854 -3.9299 20 1 7.2465 -8.9179 -2.8730 21 1 7.0522 -8.4832 -5.2506 22 6 5.2474 -3.7433 -2.7794 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5401 0.9353 0.0004 25 1 1.3601 -2.1316 0.0905 26 1 2.7572 -1.3247 0.8424 27 1 2.7696 -0.7351 -1.9196 28 1 3.4771 -0.8587 -3.3665 29 1 5.2287 -1.0293 -3.6411 30 1 3.0080 -2.6607 -4.9570 31 1 4.0514 -1.4536 -5.7473 32 1 6.0424 -2.8472 -5.2138 33 1 4.8672 -3.7442 -6.2047 34 1 5.3702 -7.3848 -1.9280 35 1 6.2791 -3.3929 -2.7493 36 1 5.0877 -4.4835 -1.9953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852123358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = -40.029720 kcal Electronic energy + Delta-G solvation = -19144.271761 eV Core-core repulsion = 16074.826370 eV Total energy + Delta-G solvation = -3069.445391 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29781 -38.68180 -37.87814 -36.21628 -35.28281 -33.77903 -32.98578 -31.46419 -27.84628 -26.87961 -25.45644 -23.44418 -21.74635 -21.39662 -20.24998 -19.08619 -18.25712 -17.46265 -16.94560 -16.50930 -16.11105 -15.60947 -15.22427 -15.19787 -14.77737 -14.47802 -14.21923 -14.17301 -13.59568 -13.53307 -13.13438 -12.83719 -12.68757 -12.65887 -12.26747 -12.23100 -11.85960 -11.82606 -11.61596 -11.25259 -10.94233 -10.84061 -10.49403 -10.31885 -10.14490 -9.26411 -8.07606 -6.25368 0.76390 1.22897 1.42609 1.44257 1.52549 1.89990 2.22302 2.44062 3.07223 3.21607 3.49265 4.03606 4.15916 4.28332 4.32340 4.56925 4.61222 4.71937 4.74026 4.81812 4.86260 5.11653 5.13961 5.19389 5.27256 5.28552 5.32891 5.46320 5.58140 5.65440 5.90244 5.98798 6.15727 6.37784 6.87635 7.09938 7.44557 7.65605 8.95334 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.004367 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.361038 B = 6410.898323 C = 6946.127770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 Cl -0.087 7.087 4 C 0.178 3.822 5 N -0.733 5.733 6 C 0.695 3.305 7 O -0.637 6.637 8 N -0.627 5.627 9 C 0.110 3.890 10 C -0.125 4.125 11 C -0.105 4.105 12 C 0.038 3.962 13 H -0.015 1.015 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.010 3.990 17 N -0.914 5.914 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.268 1.268 22 C 0.142 3.858 23 H 0.140 0.860 24 H 0.137 0.863 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.407 0.593 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.259 0.741 35 H 0.035 0.965 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 17.796 1.021 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.136 4.136 3 Cl -0.059 7.059 4 C 0.054 3.946 5 N -0.393 5.393 6 C 0.396 3.604 7 O -0.518 6.518 8 N -0.362 5.362 9 C -0.012 4.012 10 C -0.163 4.163 11 C -0.142 4.142 12 C 0.019 3.981 13 H 0.003 0.997 14 C -0.576 4.576 15 H 0.081 0.919 16 C -0.189 4.189 17 N -0.553 5.553 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.193 1.193 22 C 0.019 3.981 23 H 0.158 0.842 24 H 0.155 0.845 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.246 0.754 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.708 17.163 1.755 19.326 hybrid contribution 0.730 -0.815 -0.113 1.100 sum -7.978 16.348 1.642 18.265 Atomic orbital electron populations 1.24493 0.92762 1.05704 0.92922 1.23136 0.94344 0.86473 1.09607 1.98382 1.78460 1.31934 1.97124 1.20214 0.94814 0.93393 0.86185 1.45074 1.51100 1.21334 1.21757 1.16147 0.79318 0.82721 0.82182 1.90896 1.71231 1.40147 1.49542 1.47677 1.42805 1.25855 1.19911 1.21843 1.02843 0.89066 0.87470 1.21912 0.98667 0.98696 0.97054 1.21509 0.98631 0.95861 0.98235 1.18909 0.94750 0.92922 0.91535 0.99671 1.21501 1.20233 1.05750 1.10166 0.91939 1.25902 0.97696 1.00503 0.94831 1.70099 1.39673 1.30799 1.14710 0.85621 0.79695 0.78643 0.77771 1.19174 1.21518 1.19321 1.21601 0.88984 0.85905 1.01597 0.84214 0.84539 0.89874 0.91631 0.75449 0.88592 0.90225 0.93207 0.87685 0.92400 0.92969 0.93173 0.94693 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 14.04 67.62 0.95 -0.52 16 2 C -0.11 -1.92 5.87 25.49 0.15 -1.77 16 3 Cl -0.09 -1.59 28.99 -2.72 -0.08 -1.67 16 4 C 0.18 4.47 5.99 85.63 0.51 4.98 16 5 N -0.73 -21.54 5.46 -482.30 -2.63 -24.17 16 6 C 0.69 29.10 8.29 179.05 1.49 30.58 16 7 O -0.64 -33.68 15.77 -3.99 -0.06 -33.75 16 8 N -0.63 -25.68 2.97 -836.91 -2.49 -28.17 16 9 C 0.11 3.16 6.38 86.36 0.55 3.71 16 10 C -0.13 -3.69 6.09 30.68 0.19 -3.50 16 11 C -0.10 -4.05 5.10 30.63 0.16 -3.90 16 12 C 0.04 1.96 2.26 -11.46 -0.03 1.93 16 13 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 14 C -0.54 -29.96 8.56 25.60 0.22 -29.74 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.01 0.58 5.30 84.66 0.45 1.03 16 17 N -0.91 -56.47 11.39 21.45 0.24 -56.23 16 18 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C 0.14 7.24 5.41 86.36 0.47 7.71 16 23 H 0.14 1.41 7.84 -2.91 -0.02 1.38 16 24 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 25 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.41 9.54 5.95 -92.71 -0.55 8.98 16 28 H 0.10 2.06 5.65 -2.38 -0.01 2.05 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 4.71 5.11 -2.38 -0.01 4.69 16 Total: -1.00 -73.84 310.34 2.64 -71.20 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.53 Total: 15.60 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.10 Total: 10.52 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -4.88 Total: -108.56 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.06 Total: -33.75 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -73.84 2.64 -71.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852123358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.174 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds