Wall clock time and date at job start Mon Mar 30 2020 01:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31153 * 1 3 3 Cl 1.73598 * 120.00316 * 2 1 4 4 C 1.50702 * 120.00145 * 179.97438 * 2 1 3 5 5 N 1.46507 * 109.47108 * 115.00136 * 4 2 1 6 6 C 1.34773 * 120.00118 * 179.97438 * 5 4 2 7 7 O 1.21593 * 119.99914 * 5.07795 * 6 5 4 8 8 N 1.34770 * 120.00080 * 185.07823 * 6 5 4 9 9 C 1.46927 * 120.62986 * 354.96734 * 8 6 5 10 10 C 1.53188 * 108.77625 * 126.43560 * 9 8 6 11 11 C 1.53045 * 109.31316 * 54.63203 * 10 9 8 12 12 C 1.53035 * 109.53790 * 298.63914 * 11 10 9 13 13 H 1.08996 * 109.49610 * 301.37443 * 12 11 10 14 14 C 1.50707 * 109.49445 * 181.31775 * 12 11 10 15 15 H 1.07993 * 120.00358 * 0.05823 * 14 12 11 16 16 C 1.37880 * 119.99880 * 179.78866 * 14 12 11 17 17 N 1.31515 * 119.99808 * 0.27226 * 16 14 12 18 18 Si 1.86794 * 119.99918 * 180.27337 * 16 14 12 19 19 H 1.48493 * 109.47479 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47246 * 120.00335 * 18 16 14 21 21 H 1.48507 * 109.46979 * 239.99640 * 18 16 14 22 22 C 1.46929 * 120.60557 * 174.99394 * 8 6 5 23 23 H 1.08006 * 120.00109 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.00230 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47004 * 355.00983 * 4 2 1 26 26 H 1.08999 * 109.47300 * 235.00654 * 4 2 1 27 27 H 0.96997 * 119.99659 * 0.02562 * 5 4 2 28 28 H 1.08995 * 109.58964 * 6.64626 * 9 8 6 29 29 H 1.09006 * 109.58451 * 246.21944 * 9 8 6 30 30 H 1.08998 * 109.49858 * 294.68569 * 10 9 8 31 31 H 1.08994 * 109.52631 * 174.60168 * 10 9 8 32 32 H 1.09005 * 109.46124 * 178.61401 * 11 10 9 33 33 H 1.09005 * 109.45489 * 58.65640 * 11 10 9 34 34 H 0.97001 * 119.99997 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.56983 * 113.76425 * 22 8 6 36 36 H 1.09002 * 109.61922 * 353.32785 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8148 -1.4367 -1.2512 6 6 3.5679 -2.5320 -1.4737 7 8 3.5531 -3.4518 -0.6786 8 7 4.3375 -2.6078 -2.5775 9 6 4.2834 -1.5555 -3.6015 10 6 5.7042 -1.0435 -3.8578 11 6 6.6105 -2.2235 -4.2164 12 6 6.6557 -3.2082 -3.0458 13 1 7.0252 -2.6988 -2.1559 14 6 7.5738 -4.3536 -3.3873 15 1 8.0758 -4.3767 -4.3431 16 6 7.7770 -5.3691 -2.4771 17 7 7.1655 -5.3410 -1.3131 18 14 8.9208 -6.7849 -2.8973 19 1 9.4802 -6.5823 -4.2579 20 1 10.0281 -6.8368 -1.9091 21 1 8.1631 -8.0615 -2.8591 22 6 5.2458 -3.7449 -2.7795 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.3601 -2.1317 0.0904 26 1 2.7571 -1.3247 0.8425 27 1 2.7698 -0.7351 -1.9195 28 1 3.6574 -0.7354 -3.2500 29 1 3.8703 -1.9640 -4.5238 30 1 6.0822 -0.5543 -2.9601 31 1 5.6915 -0.3309 -4.6825 32 1 7.6167 -1.8589 -4.4233 33 1 6.2181 -2.7273 -5.0998 34 1 7.3088 -6.0552 -0.6726 35 1 4.9109 -4.3322 -3.6345 36 1 5.2552 -4.3690 -1.8859 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852123359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:02 Heat of formation + Delta-G solvation = -19.387387 kcal Electronic energy + Delta-G solvation = -19171.323001 eV Core-core repulsion = 16102.772729 eV Total energy + Delta-G solvation = -3068.550272 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73683 -37.39097 -36.71197 -35.02706 -33.45412 -32.36494 -31.56337 -29.70117 -26.58378 -25.02538 -23.90086 -21.80482 -20.53990 -20.06892 -18.72838 -17.63250 -16.40124 -16.06256 -15.60613 -14.89538 -14.48447 -14.34942 -13.80745 -13.67857 -13.53997 -12.98566 -12.59411 -12.56958 -12.39332 -11.97304 -11.94098 -11.83897 -11.02491 -10.97241 -10.88248 -10.46682 -10.37689 -10.20815 -9.85895 -9.63353 -9.38242 -9.08205 -8.92178 -8.78786 -8.40039 -7.62911 -5.96341 -4.05153 1.50383 1.99019 3.27812 3.34337 3.40799 3.43769 3.85015 4.34420 4.39928 4.48617 5.24820 5.30266 5.33880 5.35321 5.52251 5.57555 5.67506 5.79448 5.97262 6.00132 6.18612 6.33921 6.60508 6.68201 6.72503 6.82974 7.01076 7.07785 7.35918 7.50702 7.76916 7.95246 8.08657 8.43412 8.57898 8.98745 9.23786 9.60436 11.08938 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.004499 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.625642 B = 6221.891287 C = 6733.343460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 Cl -0.082 7.082 4 C 0.179 3.821 5 N -0.755 5.755 6 C 0.703 3.297 7 O -0.584 6.584 8 N -0.621 5.621 9 C 0.115 3.885 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.039 3.961 13 H 0.029 0.971 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.879 5.879 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.129 3.871 23 H 0.127 0.873 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.393 0.607 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.263 0.737 35 H 0.039 0.961 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.549 12.536 -0.602 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 Cl -0.054 7.054 4 C 0.054 3.946 5 N -0.415 5.415 6 C 0.404 3.596 7 O -0.461 6.461 8 N -0.357 5.357 9 C -0.009 4.009 10 C -0.172 4.172 11 C -0.147 4.147 12 C 0.019 3.981 13 H 0.047 0.953 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.009 3.991 23 H 0.145 0.855 24 H 0.133 0.867 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.229 0.771 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.463 11.836 0.165 17.189 hybrid contribution 0.613 -0.168 -0.498 0.808 sum -11.849 11.669 -0.333 16.634 Atomic orbital electron populations 1.24149 0.93649 1.04040 0.97641 1.23535 0.94128 0.88068 1.05619 1.98390 1.78102 1.32076 1.96847 1.20165 0.95124 0.91351 0.87993 1.45265 1.52626 1.22906 1.20730 1.15893 0.78955 0.82238 0.82506 1.90925 1.69583 1.38131 1.47452 1.47782 1.43061 1.25590 1.19304 1.21500 0.97431 0.90041 0.91909 1.21947 0.95517 0.98820 1.00903 1.21613 0.97555 0.95437 1.00117 1.19000 0.92140 0.93683 0.93248 0.95334 1.21116 1.26675 1.06178 1.01942 0.92325 1.25059 0.95822 0.98224 0.94937 1.69906 1.41992 1.33084 1.06719 0.86544 0.80730 0.82407 0.78370 1.19808 1.21041 1.20981 1.22197 0.87715 0.85758 1.03449 0.85502 0.86709 0.89634 0.90174 0.77056 0.92201 0.92085 0.92144 0.92335 0.93065 0.93194 0.92723 0.94239 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 14.04 28.97 0.41 -0.78 16 2 C -0.09 -0.87 5.87 -36.07 -0.21 -1.08 16 3 Cl -0.08 -0.87 28.99 -51.86 -1.50 -2.38 16 4 C 0.18 2.32 5.99 -5.19 -0.03 2.29 16 5 N -0.75 -11.52 5.46 -66.41 -0.36 -11.88 16 6 C 0.70 14.48 8.29 -86.93 -0.72 13.76 16 7 O -0.58 -14.63 15.78 5.28 0.08 -14.55 16 8 N -0.62 -12.69 2.97 -178.50 -0.53 -13.22 16 9 C 0.12 1.81 6.43 -3.71 -0.02 1.79 16 10 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 11 C -0.11 -2.19 5.11 -26.69 -0.14 -2.32 16 12 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.52 -14.18 8.56 -34.44 -0.29 -14.48 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 17 N -0.88 -25.90 11.40 55.43 0.63 -25.27 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 C 0.13 3.18 5.39 -3.71 -0.02 3.16 16 23 H 0.13 0.81 7.84 -52.48 -0.41 0.39 16 24 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 25 H 0.09 1.08 7.80 -51.93 -0.40 0.68 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.39 5.12 5.92 -40.82 -0.24 4.88 16 28 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.12 3.53 5.17 -51.93 -0.27 3.27 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -31.74 310.33 -8.48 -40.22 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.96 Total: 3.65 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.49 Total: 2.40 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.26 Total: -50.37 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.74 -8.48 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852123359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.833 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds