Wall clock time and date at job start Mon Mar 30 2020 01:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31153 * 1 3 3 Cl 1.73598 * 120.00316 * 2 1 4 4 C 1.50702 * 120.00145 * 179.97438 * 2 1 3 5 5 N 1.46507 * 109.47108 * 115.00136 * 4 2 1 6 6 C 1.34773 * 120.00118 * 179.97438 * 5 4 2 7 7 O 1.21593 * 119.99914 * 5.07795 * 6 5 4 8 8 N 1.34770 * 120.00080 * 185.07823 * 6 5 4 9 9 C 1.46927 * 120.62986 * 354.96734 * 8 6 5 10 10 C 1.53188 * 108.77625 * 126.43560 * 9 8 6 11 11 C 1.53045 * 109.31316 * 54.63203 * 10 9 8 12 12 C 1.53035 * 109.53790 * 298.63914 * 11 10 9 13 13 H 1.08996 * 109.49610 * 301.37443 * 12 11 10 14 14 C 1.50707 * 109.49445 * 181.31775 * 12 11 10 15 15 H 1.07993 * 120.00358 * 0.05823 * 14 12 11 16 16 C 1.37880 * 119.99880 * 179.78866 * 14 12 11 17 17 N 1.31515 * 119.99808 * 0.27226 * 16 14 12 18 18 Si 1.86794 * 119.99918 * 180.27337 * 16 14 12 19 19 H 1.48493 * 109.47479 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47246 * 120.00335 * 18 16 14 21 21 H 1.48507 * 109.46979 * 239.99640 * 18 16 14 22 22 C 1.46929 * 120.60557 * 174.99394 * 8 6 5 23 23 H 1.08006 * 120.00109 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.00230 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47004 * 355.00983 * 4 2 1 26 26 H 1.08999 * 109.47300 * 235.00654 * 4 2 1 27 27 H 0.96997 * 119.99659 * 0.02562 * 5 4 2 28 28 H 1.08995 * 109.58964 * 6.64626 * 9 8 6 29 29 H 1.09006 * 109.58451 * 246.21944 * 9 8 6 30 30 H 1.08998 * 109.49858 * 294.68569 * 10 9 8 31 31 H 1.08994 * 109.52631 * 174.60168 * 10 9 8 32 32 H 1.09005 * 109.46124 * 178.61401 * 11 10 9 33 33 H 1.09005 * 109.45489 * 58.65640 * 11 10 9 34 34 H 0.97001 * 119.99997 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.56983 * 113.76425 * 22 8 6 36 36 H 1.09002 * 109.61922 * 353.32785 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8148 -1.4367 -1.2512 6 6 3.5679 -2.5320 -1.4737 7 8 3.5531 -3.4518 -0.6786 8 7 4.3375 -2.6078 -2.5775 9 6 4.2834 -1.5555 -3.6015 10 6 5.7042 -1.0435 -3.8578 11 6 6.6105 -2.2235 -4.2164 12 6 6.6557 -3.2082 -3.0458 13 1 7.0252 -2.6988 -2.1559 14 6 7.5738 -4.3536 -3.3873 15 1 8.0758 -4.3767 -4.3431 16 6 7.7770 -5.3691 -2.4771 17 7 7.1655 -5.3410 -1.3131 18 14 8.9208 -6.7849 -2.8973 19 1 9.4802 -6.5823 -4.2579 20 1 10.0281 -6.8368 -1.9091 21 1 8.1631 -8.0615 -2.8591 22 6 5.2458 -3.7449 -2.7795 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.3601 -2.1317 0.0904 26 1 2.7571 -1.3247 0.8425 27 1 2.7698 -0.7351 -1.9195 28 1 3.6574 -0.7354 -3.2500 29 1 3.8703 -1.9640 -4.5238 30 1 6.0822 -0.5543 -2.9601 31 1 5.6915 -0.3309 -4.6825 32 1 7.6167 -1.8589 -4.4233 33 1 6.2181 -2.7273 -5.0998 34 1 7.3088 -6.0552 -0.6726 35 1 4.9109 -4.3322 -3.6345 36 1 5.2552 -4.3690 -1.8859 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852123359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:02 Heat of formation + Delta-G solvation = -40.169119 kcal Electronic energy + Delta-G solvation = -19172.224165 eV Core-core repulsion = 16102.772729 eV Total energy + Delta-G solvation = -3069.451436 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30455 -38.68586 -37.88075 -36.22023 -35.28857 -33.77522 -32.99425 -31.46823 -27.84758 -26.88880 -25.46160 -23.44782 -21.75243 -21.40108 -20.22472 -19.12975 -18.25183 -17.47115 -16.86419 -16.62787 -16.12860 -15.48325 -15.25166 -15.19230 -14.91916 -14.48663 -14.22491 -14.09817 -13.66535 -13.46114 -13.14152 -12.89973 -12.69298 -12.62681 -12.27067 -12.20136 -11.85842 -11.82477 -11.62900 -11.26030 -10.96116 -10.83322 -10.51368 -10.31061 -10.14966 -9.26800 -8.09152 -6.26324 0.76731 1.24067 1.41057 1.42647 1.54762 1.87618 2.24873 2.43407 3.05928 3.21052 3.49379 4.03990 4.15893 4.28175 4.31518 4.56689 4.60893 4.72268 4.73803 4.81290 4.85977 5.11293 5.15015 5.18980 5.27183 5.28373 5.32879 5.46420 5.57980 5.64461 5.89545 5.97812 6.15301 6.37053 6.87057 7.09586 7.43797 7.64795 8.94595 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.004499 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.625642 B = 6221.891287 C = 6733.343460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.111 4.111 3 Cl -0.090 7.090 4 C 0.178 3.822 5 N -0.733 5.733 6 C 0.696 3.304 7 O -0.638 6.638 8 N -0.627 5.627 9 C 0.110 3.890 10 C -0.126 4.126 11 C -0.104 4.104 12 C 0.037 3.963 13 H -0.015 1.015 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.916 5.916 18 Si 0.958 3.042 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.144 3.856 23 H 0.143 0.857 24 H 0.136 0.864 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.407 0.593 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.259 0.741 35 H 0.035 0.965 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 14.264 -2.357 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 Cl -0.062 7.062 4 C 0.054 3.946 5 N -0.393 5.393 6 C 0.397 3.603 7 O -0.520 6.520 8 N -0.362 5.362 9 C -0.012 4.012 10 C -0.164 4.164 11 C -0.142 4.142 12 C 0.018 3.982 13 H 0.003 0.997 14 C -0.573 4.573 15 H 0.081 0.919 16 C -0.190 4.190 17 N -0.555 5.555 18 Si 0.784 3.216 19 H -0.184 1.184 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.021 3.979 23 H 0.161 0.839 24 H 0.154 0.846 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.246 0.754 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.863 13.642 -1.628 19.518 hybrid contribution 0.960 -0.661 0.067 1.167 sum -12.904 12.981 -1.561 18.370 Atomic orbital electron populations 1.24494 0.92584 1.05795 0.92732 1.23152 0.94395 0.86395 1.09779 1.98387 1.78554 1.32136 1.97134 1.20221 0.94742 0.93590 0.86071 1.45072 1.51193 1.21252 1.21773 1.16138 0.79344 0.82865 0.81950 1.90882 1.71376 1.40463 1.49230 1.47683 1.42247 1.25759 1.20558 1.21854 0.98055 0.89745 0.91529 1.21905 0.94564 0.97858 1.02061 1.21502 0.98910 0.95763 0.98021 1.18932 0.91696 0.94033 0.93559 0.99706 1.21555 1.26928 1.06904 1.01945 0.91894 1.25908 0.97359 1.00996 0.94751 1.70107 1.43627 1.33864 1.07877 0.85499 0.78568 0.78962 0.78598 1.18355 1.20917 1.20848 1.21592 0.88702 0.86765 1.00862 0.83897 0.84594 0.89300 0.92266 0.75441 0.88611 0.90011 0.93330 0.87752 0.93004 0.92281 0.93170 0.94676 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 14.04 67.63 0.95 -0.42 16 2 C -0.11 -1.98 5.87 25.49 0.15 -1.83 16 3 Cl -0.09 -1.75 28.99 -2.72 -0.08 -1.83 16 4 C 0.18 4.52 5.99 85.63 0.51 5.03 16 5 N -0.73 -21.72 5.46 -482.27 -2.63 -24.35 16 6 C 0.70 29.16 8.29 179.06 1.49 30.65 16 7 O -0.64 -33.59 15.78 -4.01 -0.06 -33.66 16 8 N -0.63 -25.68 2.97 -836.91 -2.49 -28.17 16 9 C 0.11 3.17 6.43 86.36 0.56 3.72 16 10 C -0.13 -3.74 6.08 30.67 0.19 -3.55 16 11 C -0.10 -4.05 5.11 30.62 0.16 -3.89 16 12 C 0.04 1.90 2.25 -11.46 -0.03 1.88 16 13 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 14 C -0.53 -29.77 8.56 25.60 0.22 -29.56 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.01 0.52 5.31 84.66 0.45 0.97 16 17 N -0.92 -56.59 11.40 21.45 0.24 -56.35 16 18 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C 0.14 7.32 5.39 86.36 0.47 7.79 16 23 H 0.14 1.25 7.84 -2.91 -0.02 1.23 16 24 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 25 H 0.09 2.20 7.80 -2.38 -0.02 2.18 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.41 9.63 5.92 -92.71 -0.55 9.08 16 28 H 0.10 2.06 5.57 -2.39 -0.01 2.05 16 29 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 4.62 5.17 -2.39 -0.01 4.61 16 Total: -1.00 -74.20 310.33 2.64 -71.55 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.53 Total: 15.27 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 5.10 Total: 10.79 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.88 Total: -108.86 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.06 Total: -33.66 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -74.20 2.64 -71.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852123359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.385 kcal (2) G-P(sol) polarization free energy of solvation -74.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds