Wall clock time and date at job start Mon Mar 30 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 O 1.45194 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00260 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00481 * 180.02562 * 12 11 10 15 15 H 1.09008 * 115.53788 * 325.58164 * 14 12 11 16 16 C 1.52954 * 117.48383 * 111.16727 * 14 12 11 17 17 H 1.08993 * 118.97295 * 355.96315 * 16 14 12 18 18 C 1.50947 * 118.98956 * 201.35229 * 16 14 12 19 19 C 1.38794 * 129.72482 * 115.03529 * 18 16 14 20 20 C 1.38012 * 120.32035 * 179.97438 * 19 18 16 21 21 C 1.38248 * 119.88234 * 359.97159 * 20 19 18 22 22 C 1.38025 * 119.87756 * 0.02562 * 21 20 19 23 23 C 1.37806 * 110.48081 * 295.01275 * 18 16 14 24 24 C 1.50969 * 110.46427 * 0.05491 * 23 18 16 25 25 C 1.53035 * 117.48541 * 179.97438 * 14 12 11 26 26 H 1.09006 * 119.41630 * 4.09203 * 25 14 12 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 29 29 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 30 30 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 31 31 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 32 32 H 1.08002 * 119.84072 * 359.91617 * 19 18 16 33 33 H 1.07993 * 120.06154 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.06150 * 179.97438 * 21 20 19 35 35 H 1.08007 * 119.84208 * 179.97438 * 22 21 20 36 36 H 1.08995 * 109.91910 * 119.66015 * 24 23 18 37 37 H 1.09004 * 109.91498 * 240.96921 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 8 1.5195 -4.9194 0.0167 12 6 2.2506 -6.0451 0.0222 13 8 3.4573 -5.9819 0.0223 14 6 1.5666 -7.3879 0.0284 15 1 0.6301 -7.4357 0.5843 16 6 1.6831 -8.2452 -1.2329 17 1 2.1919 -7.8349 -2.1051 18 6 0.6615 -9.3292 -1.4777 19 6 -0.2844 -9.4451 -2.4868 20 6 -1.1325 -10.5332 -2.5250 21 6 -1.0399 -11.5132 -1.5543 22 6 -0.0998 -11.3996 -0.5501 23 6 0.7534 -10.3058 -0.5098 24 6 1.8448 -9.9693 0.4776 25 6 2.4557 -8.6334 0.0339 26 1 3.5376 -8.5186 0.1010 27 1 -0.4850 0.8400 0.0004 28 1 0.6245 -2.5529 0.8956 29 1 0.6244 -2.5609 -0.8844 30 1 2.8721 -3.6081 -0.8798 31 1 2.8721 -3.6002 0.9002 32 1 -0.3577 -8.6797 -3.2452 33 1 -1.8672 -10.6190 -3.3119 34 1 -1.7024 -12.3657 -1.5813 35 1 -0.0282 -12.1654 0.2082 36 1 1.4232 -9.8712 1.4779 37 1 2.6074 -10.7481 0.4677 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859854204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:08 Heat of formation + Delta-G solvation = -58.880749 kcal Electronic energy + Delta-G solvation = -19324.414780 eV Core-core repulsion = 16224.292045 eV Total energy + Delta-G solvation = -3100.122734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.23671 -41.01694 -38.36228 -37.39854 -35.48137 -32.88001 -32.35676 -31.53007 -28.80659 -27.47997 -25.83973 -23.56415 -22.90903 -22.21574 -21.50364 -20.99461 -19.20933 -18.34069 -17.77128 -17.58746 -17.02930 -16.54087 -16.17467 -16.02127 -15.23051 -15.05210 -14.50147 -14.44882 -14.39387 -13.87723 -13.71989 -13.46491 -13.19250 -13.05746 -12.84316 -12.63459 -12.59736 -12.30061 -11.95265 -11.76588 -11.72357 -11.57113 -11.53048 -11.39695 -11.18399 -10.63768 -9.69302 -9.46660 -8.29133 -6.43010 0.27961 0.45938 0.98543 1.39058 1.42018 1.50710 1.57219 2.37329 2.42433 2.89394 3.05156 3.26207 3.44657 3.55422 3.82958 3.83158 4.03197 4.15980 4.16910 4.19926 4.21496 4.31687 4.56083 4.63835 4.64793 4.78318 4.83020 4.85572 5.01612 5.09800 5.21110 5.23824 5.41963 5.47538 5.53365 5.61469 5.68776 5.70448 6.03083 6.08788 6.63309 6.71001 7.27015 8.83650 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.034102 B = 0.003041 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.874711 B = 9205.670118 C = 9747.489625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.362 6.362 12 C 0.489 3.511 13 O -0.536 6.536 14 C -0.139 4.139 15 H 0.142 0.858 16 C -0.097 4.097 17 H 0.117 0.883 18 C -0.092 4.092 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.099 4.099 24 C -0.049 4.049 25 C -0.106 4.106 26 H 0.136 0.864 27 H 0.268 0.732 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 -25.540 -1.751 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.589 4.589 8 H 0.084 0.916 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.279 6.279 12 C 0.334 3.666 13 O -0.426 6.426 14 C -0.157 4.157 15 H 0.160 0.840 16 C -0.116 4.116 17 H 0.135 0.865 18 C -0.092 4.092 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.099 4.099 24 C -0.085 4.085 25 C -0.124 4.124 26 H 0.153 0.847 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.121 0.879 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.316 -25.375 -1.752 25.437 hybrid contribution 0.270 1.507 -0.205 1.545 sum -0.045 -23.868 -1.957 23.948 Atomic orbital electron populations 1.70096 1.07870 1.28357 1.50285 1.25989 0.95860 1.03499 0.93983 0.85295 0.78521 0.77599 0.78720 1.19482 1.20297 1.18677 1.21366 0.93728 0.91145 1.52671 0.91598 1.18988 0.94342 0.90656 0.96666 1.23226 0.95113 0.78823 1.01158 1.86505 1.42650 1.15837 1.82868 1.22951 0.85673 0.86533 0.71466 1.90604 1.16524 1.88427 1.47066 1.21657 1.03196 0.85451 1.05433 0.83997 1.21465 0.99957 0.97860 0.92288 0.86543 1.19688 0.96975 0.95239 0.97294 1.20967 0.95020 0.99070 0.98166 1.21348 0.99279 0.93854 1.00072 1.21449 0.98275 0.99544 0.94063 1.20966 0.94998 0.97297 0.99762 1.20705 0.98063 0.95147 0.95959 1.20386 0.96006 0.93721 0.98394 1.23158 0.98959 0.91349 0.98930 0.84666 0.92270 0.97525 0.97622 0.92059 0.91935 0.85927 0.83763 0.83045 0.83518 0.87911 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.03 1.69 5.35 29.85 0.16 1.85 16 10 C 0.09 4.18 5.40 71.98 0.39 4.57 16 11 O -0.36 -15.43 10.22 -51.38 -0.53 -15.96 16 12 C 0.49 17.89 7.74 71.24 0.55 18.45 16 13 O -0.54 -21.56 16.08 21.94 0.35 -21.21 16 14 C -0.14 -3.78 5.88 -11.54 -0.07 -3.85 16 15 H 0.14 3.59 8.14 -2.38 -0.02 3.57 16 16 C -0.10 -2.37 6.58 -11.35 -0.07 -2.44 16 17 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 18 C -0.09 -2.01 5.94 -19.76 -0.12 -2.13 16 19 C -0.11 -2.32 10.04 22.35 0.22 -2.09 16 20 C -0.13 -2.03 10.04 22.22 0.22 -1.81 16 21 C -0.12 -1.57 10.05 22.22 0.22 -1.34 16 22 C -0.11 -1.62 10.04 22.35 0.22 -1.39 16 23 C -0.10 -1.78 6.11 -19.75 -0.12 -1.90 16 24 C -0.05 -0.75 6.57 30.08 0.20 -0.55 16 25 C -0.11 -2.27 6.55 -10.50 -0.07 -2.34 16 26 H 0.14 2.96 7.80 -2.38 -0.02 2.94 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.06 2.80 8.13 -2.39 -0.02 2.78 16 31 H 0.06 2.85 8.13 -2.38 -0.02 2.83 16 32 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -68.88 322.52 5.64 -63.24 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.06 Total: 9.52 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 2.44 Total: -25.71 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.17 Total: -37.17 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.88 5.64 -63.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859854204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.359 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds