Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.34231 * 116.99983 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00142 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00053 * 180.02562 * 12 11 10 15 15 H 1.09010 * 115.54189 * 325.80138 * 14 12 11 16 16 C 1.53044 * 117.48242 * 180.21483 * 14 12 11 17 17 H 1.08998 * 119.41384 * 140.81797 * 16 14 12 18 18 C 1.53446 * 118.57392 * 343.84206 * 16 14 12 19 19 C 1.50963 * 107.03461 * 297.02674 * 18 16 14 20 20 C 1.38790 * 129.71949 * 179.66178 * 19 18 16 21 21 C 1.38021 * 120.31096 * 179.97438 * 20 19 18 22 22 C 1.38253 * 119.87770 * 0.04720 * 21 20 19 23 23 C 1.38015 * 119.88484 * 359.97438 * 22 21 20 24 24 C 1.37811 * 110.46412 * 359.66267 * 19 18 16 25 25 C 1.50940 * 110.48122 * 359.96469 * 24 19 18 26 26 H 1.09001 * 117.43802 * 220.70790 * 25 24 19 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 29 29 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 32 32 H 1.08995 * 109.91934 * 56.37408 * 18 16 14 33 33 H 1.08998 * 109.91708 * 177.68256 * 18 16 14 34 34 H 1.07999 * 119.84532 * 359.97438 * 20 19 18 35 35 H 1.07996 * 120.06416 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.05502 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.83946 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2505 -6.0452 0.0007 13 8 3.4570 -5.9820 0.0003 14 6 1.5663 -7.3880 0.0007 15 1 0.6283 -7.4376 0.5538 16 6 2.4555 -8.6336 0.0053 17 1 2.1657 -9.4960 0.6056 18 6 3.9365 -8.4796 -0.3656 19 6 3.9866 -8.0012 -1.7965 20 6 5.0827 -7.7057 -2.5950 21 6 4.9025 -7.2778 -3.8948 22 6 3.6245 -7.1417 -4.4041 23 6 2.5334 -7.4347 -3.6113 24 6 2.7126 -7.8660 -2.3043 25 6 1.6865 -8.2414 -1.2630 26 1 0.8237 -8.8196 -1.5937 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8905 32 1 4.4086 -7.7462 0.2880 33 1 4.4433 -9.4405 -0.2772 34 1 6.0813 -7.8112 -2.1974 35 1 5.7583 -7.0494 -4.5127 36 1 3.4802 -6.8067 -5.4206 37 1 1.5354 -7.3285 -4.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859854206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = -36.061159 kcal Electronic energy + Delta-G solvation = -20203.695002 eV Core-core repulsion = 17104.561799 eV Total energy + Delta-G solvation = -3099.133203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34457 -39.27708 -37.18991 -35.68654 -33.32778 -31.83009 -30.66033 -30.17859 -27.78722 -25.73461 -24.24399 -22.69110 -21.39445 -20.80706 -20.46089 -19.60642 -17.52427 -16.49457 -16.04423 -15.93963 -15.69387 -15.38199 -14.72432 -14.60449 -14.35970 -13.51652 -13.27779 -13.26844 -12.77460 -12.50905 -12.35854 -12.26069 -11.91045 -11.30759 -11.22002 -11.01138 -10.84502 -10.77829 -10.68249 -10.62054 -10.43747 -9.91417 -9.60585 -9.47895 -9.26556 -8.70118 -8.46652 -8.42895 -6.09074 -4.13321 1.31084 1.45212 2.47372 3.13439 3.29229 3.35209 3.39617 3.46875 3.82892 4.27638 4.39013 4.41342 4.73414 4.78934 5.00339 5.04143 5.10892 5.22234 5.27430 5.35087 5.48222 5.54959 5.68198 5.75536 5.80826 5.93290 6.07476 6.12765 6.14914 6.24993 6.46226 6.53785 6.66514 6.67301 7.02159 7.09501 7.58511 7.64657 7.88804 8.22933 8.33715 8.92148 9.50916 11.02496 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004234 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.001798 B = 6611.936857 C = 7133.550752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.078 3.922 11 O -0.355 6.355 12 C 0.482 3.518 13 O -0.506 6.506 14 C -0.131 4.131 15 H 0.145 0.855 16 C -0.123 4.123 17 H 0.134 0.866 18 C -0.063 4.063 19 C -0.060 4.060 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.094 4.094 24 C -0.088 4.088 25 C -0.094 4.094 26 H 0.130 0.870 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 -19.843 -4.162 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.271 6.271 12 C 0.325 3.675 13 O -0.396 6.396 14 C -0.149 4.149 15 H 0.162 0.838 16 C -0.141 4.141 17 H 0.152 0.848 18 C -0.099 4.099 19 C -0.060 4.060 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.112 4.112 24 C -0.088 4.088 25 C -0.112 4.112 26 H 0.147 0.853 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.359 -19.654 -4.162 20.792 hybrid contribution 0.381 1.158 -0.056 1.220 sum 5.740 -18.496 -4.218 19.820 Atomic orbital electron populations 1.69973 1.06089 1.26952 1.49852 1.24976 0.94905 0.99350 0.94877 0.86479 0.79779 0.82855 0.78248 1.20477 1.21028 1.19724 1.20981 0.93151 0.90147 1.52107 0.92316 1.19162 0.94191 0.89064 0.98813 1.23600 0.96310 0.78822 1.00755 1.86503 1.42403 1.15689 1.82475 1.22432 0.86009 0.86247 0.72820 1.90569 1.15454 1.87878 1.45679 1.21958 1.02314 0.87559 1.03109 0.83777 1.23029 0.93593 0.97008 1.00448 0.84776 1.20472 0.94433 1.01767 0.93258 1.20360 0.93212 0.97463 0.94959 1.20589 0.97968 1.00503 0.93795 1.21022 0.97244 0.99367 0.95449 1.20980 0.92507 1.01273 0.99923 1.20675 0.99163 0.98537 0.92827 1.19611 0.93601 1.01656 0.93974 1.21484 1.00280 1.01903 0.87498 0.85257 0.92727 0.95421 0.95376 0.92513 0.92432 0.87242 0.90253 0.86302 0.85964 0.85881 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.67 5.35 -27.88 -0.15 0.52 16 10 C 0.08 1.80 5.40 37.16 0.20 2.00 16 11 O -0.35 -7.47 10.22 -39.26 -0.40 -7.87 16 12 C 0.48 8.77 7.05 36.00 0.25 9.03 16 13 O -0.51 -9.98 12.29 -18.75 -0.23 -10.21 16 14 C -0.13 -1.71 6.29 -91.77 -0.58 -2.29 16 15 H 0.14 1.54 8.14 -51.92 -0.42 1.11 16 16 C -0.12 -1.32 7.06 -90.15 -0.64 -1.96 16 17 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.06 -0.76 5.77 -27.52 -0.16 -0.92 16 19 C -0.06 -0.83 4.87 -104.45 -0.51 -1.34 16 20 C -0.11 -1.45 10.04 -39.46 -0.40 -1.85 16 21 C -0.11 -1.39 10.05 -39.66 -0.40 -1.79 16 22 C -0.13 -1.60 10.05 -39.66 -0.40 -2.00 16 23 C -0.09 -1.25 10.04 -39.46 -0.40 -1.65 16 24 C -0.09 -1.23 5.27 -104.45 -0.55 -1.78 16 25 C -0.09 -1.10 6.85 -91.46 -0.63 -1.73 16 26 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 31 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 32 H 0.11 1.55 6.22 -51.93 -0.32 1.23 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -32.61 314.94 -9.86 -42.47 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.94 Total: -0.31 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -4.75 Total: -19.49 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.63 Total: -18.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.61 -9.86 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859854206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.408 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds