Wall clock time and date at job start Mon Mar 30 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.34231 * 116.99983 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00142 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00053 * 180.02562 * 12 11 10 15 15 H 1.09010 * 115.54189 * 325.80138 * 14 12 11 16 16 C 1.53044 * 117.48242 * 180.21483 * 14 12 11 17 17 H 1.08998 * 119.41384 * 140.81797 * 16 14 12 18 18 C 1.53446 * 118.57392 * 343.84206 * 16 14 12 19 19 C 1.50963 * 107.03461 * 297.02674 * 18 16 14 20 20 C 1.38790 * 129.71949 * 179.66178 * 19 18 16 21 21 C 1.38021 * 120.31096 * 179.97438 * 20 19 18 22 22 C 1.38253 * 119.87770 * 0.04720 * 21 20 19 23 23 C 1.38015 * 119.88484 * 359.97438 * 22 21 20 24 24 C 1.37811 * 110.46412 * 359.66267 * 19 18 16 25 25 C 1.50940 * 110.48122 * 359.96469 * 24 19 18 26 26 H 1.09001 * 117.43802 * 220.70790 * 25 24 19 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 29 29 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 32 32 H 1.08995 * 109.91934 * 56.37408 * 18 16 14 33 33 H 1.08998 * 109.91708 * 177.68256 * 18 16 14 34 34 H 1.07999 * 119.84532 * 359.97438 * 20 19 18 35 35 H 1.07996 * 120.06416 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.05502 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.83946 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2505 -6.0452 0.0007 13 8 3.4570 -5.9820 0.0003 14 6 1.5663 -7.3880 0.0007 15 1 0.6283 -7.4376 0.5538 16 6 2.4555 -8.6336 0.0053 17 1 2.1657 -9.4960 0.6056 18 6 3.9365 -8.4796 -0.3656 19 6 3.9866 -8.0012 -1.7965 20 6 5.0827 -7.7057 -2.5950 21 6 4.9025 -7.2778 -3.8948 22 6 3.6245 -7.1417 -4.4041 23 6 2.5334 -7.4347 -3.6113 24 6 2.7126 -7.8660 -2.3043 25 6 1.6865 -8.2414 -1.2630 26 1 0.8237 -8.8196 -1.5937 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8905 32 1 4.4086 -7.7462 0.2880 33 1 4.4433 -9.4405 -0.2772 34 1 6.0813 -7.8112 -2.1974 35 1 5.7583 -7.0494 -4.5127 36 1 3.4802 -6.8067 -5.4206 37 1 1.5354 -7.3285 -4.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859854206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:10 Heat of formation + Delta-G solvation = -52.629624 kcal Electronic energy + Delta-G solvation = -20204.413464 eV Core-core repulsion = 17104.561799 eV Total energy + Delta-G solvation = -3099.851665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.43695 -40.64735 -38.31152 -37.16426 -35.47376 -32.85135 -32.32108 -31.50820 -28.74376 -27.47796 -25.75705 -23.79970 -22.91061 -22.29692 -21.35535 -20.90254 -18.99413 -18.27725 -17.56971 -17.33290 -16.93015 -16.55979 -16.40889 -15.69633 -15.61653 -15.00023 -14.52936 -14.42528 -14.32721 -13.98012 -13.60966 -13.42512 -13.09102 -13.02365 -12.78578 -12.61008 -12.57276 -12.24187 -11.84024 -11.78141 -11.62724 -11.53081 -11.49440 -11.41072 -10.83488 -10.64010 -9.68865 -9.43189 -8.29366 -6.43223 0.32987 0.46833 1.13107 1.38881 1.41212 1.52248 1.74040 2.38146 2.47533 2.86760 3.04714 3.33350 3.48051 3.71133 3.90072 3.94688 4.11688 4.13451 4.16944 4.21658 4.23127 4.50233 4.55997 4.64911 4.67639 4.77866 4.86369 4.92017 5.04234 5.13641 5.24007 5.32248 5.42163 5.50445 5.57333 5.59836 5.68565 5.74353 6.03493 6.09077 6.69014 6.80432 7.26701 8.83383 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004234 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.001798 B = 6611.936857 C = 7133.550752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.096 3.904 11 O -0.368 6.368 12 C 0.472 3.528 13 O -0.526 6.526 14 C -0.147 4.147 15 H 0.172 0.828 16 C -0.101 4.101 17 H 0.178 0.822 18 C -0.067 4.067 19 C -0.082 4.082 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.140 4.140 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.091 4.091 26 H 0.161 0.839 27 H 0.269 0.731 28 H 0.004 0.996 29 H 0.007 0.993 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -20.797 -4.172 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.005 4.005 10 C 0.023 3.977 11 O -0.284 6.284 12 C 0.317 3.683 13 O -0.416 6.416 14 C -0.165 4.165 15 H 0.189 0.811 16 C -0.118 4.118 17 H 0.196 0.804 18 C -0.103 4.103 19 C -0.082 4.082 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.158 4.158 23 C -0.131 4.131 24 C -0.112 4.112 25 C -0.109 4.109 26 H 0.179 0.821 27 H 0.078 0.922 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.809 -20.636 -4.173 21.840 hybrid contribution 0.278 1.396 -0.102 1.427 sum 6.087 -19.240 -4.275 20.628 Atomic orbital electron populations 1.70092 1.07824 1.28353 1.50222 1.25965 0.95852 1.03397 0.93919 0.85315 0.78536 0.77678 0.78732 1.19493 1.20110 1.18778 1.21351 0.93583 0.91281 1.52790 0.91933 1.18964 0.94282 0.90666 0.96561 1.23052 0.94955 0.79392 1.00349 1.86501 1.42841 1.15851 1.83252 1.23551 0.86158 0.86869 0.71686 1.90566 1.16443 1.88096 1.46447 1.22205 1.03980 0.84919 1.05434 0.81092 1.23319 0.92243 0.96391 0.99880 0.80440 1.20544 0.95729 1.02326 0.91751 1.20740 0.93588 0.97857 0.95990 1.20924 0.98661 1.00800 0.94387 1.21372 0.98127 0.98806 0.95572 1.21332 0.92510 1.00970 1.00940 1.21002 1.00099 0.98790 0.93205 1.20013 0.94463 1.02041 0.94721 1.21699 1.01101 1.01128 0.86944 0.82143 0.92244 0.97809 0.97417 0.93186 0.92378 0.89682 0.87541 0.85162 0.83763 0.83897 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.81 5.35 29.85 0.16 1.97 16 10 C 0.10 4.58 5.40 71.98 0.39 4.97 16 11 O -0.37 -15.80 10.22 -51.42 -0.53 -16.32 16 12 C 0.47 17.17 7.05 71.24 0.50 17.67 16 13 O -0.53 -20.95 12.29 21.98 0.27 -20.68 16 14 C -0.15 -3.56 6.29 -11.54 -0.07 -3.64 16 15 H 0.17 3.17 8.14 -2.38 -0.02 3.15 16 16 C -0.10 -1.86 7.06 -10.49 -0.07 -1.94 16 17 H 0.18 1.74 8.14 -2.39 -0.02 1.72 16 18 C -0.07 -1.52 5.77 30.08 0.17 -1.35 16 19 C -0.08 -2.21 4.87 -19.75 -0.10 -2.31 16 20 C -0.13 -3.37 10.04 22.35 0.22 -3.14 16 21 C -0.12 -2.90 10.05 22.22 0.22 -2.68 16 22 C -0.14 -3.39 10.05 22.22 0.22 -3.17 16 23 C -0.11 -2.94 10.04 22.35 0.22 -2.72 16 24 C -0.11 -3.01 5.27 -19.76 -0.10 -3.11 16 25 C -0.09 -1.92 6.85 -11.34 -0.08 -2.00 16 26 H 0.16 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 2.42 8.13 -2.39 -0.02 2.40 16 31 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 32 H 0.09 2.38 6.22 -2.39 -0.01 2.36 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 37 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -71.97 314.94 5.51 -66.46 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.06 Total: 12.74 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 2.39 Total: -32.54 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.28 Total: -55.94 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.26 Total: -37.00 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.97 5.51 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859854206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.829 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds