Wall clock time and date at job start Mon Mar 30 2020 01:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99729 * 2 1 4 4 H 1.48499 * 109.47368 * 240.00603 * 3 2 1 5 5 H 1.48500 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47193 * 120.00096 * 3 2 1 7 7 C 1.37878 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99446 * 172.73315 * 7 2 1 9 9 C 1.50695 * 120.00201 * 352.72920 * 7 2 1 10 10 C 1.52993 * 115.55162 * 294.59728 * 9 7 2 11 11 O 1.45199 * 109.47057 * 275.58146 * 10 9 7 12 12 C 1.34227 * 116.99849 * 184.79771 * 11 10 9 13 13 O 1.20824 * 120.00484 * 5.08355 * 12 11 10 14 14 C 1.50706 * 120.00021 * 185.08606 * 12 11 10 15 15 F 1.39900 * 109.61329 * 54.40957 * 14 12 11 16 16 C 1.53206 * 109.53889 * 294.19744 * 14 12 11 17 17 C 1.53088 * 109.14785 * 183.15577 * 16 14 12 18 18 O 1.42909 * 109.42567 * 57.60422 * 17 16 14 19 19 C 1.42902 * 114.09533 * 298.83403 * 18 17 16 20 20 C 1.53088 * 109.41494 * 61.15593 * 19 18 17 21 21 C 1.53000 * 117.51649 * 80.29600 * 9 7 2 22 22 C 1.52999 * 60.00163 * 107.48029 * 21 9 7 23 23 H 0.96999 * 120.00659 * 4.99909 * 1 2 3 24 24 H 1.09000 * 109.47243 * 155.57916 * 10 9 7 25 25 H 1.08998 * 109.47171 * 35.58370 * 10 9 7 26 26 H 1.08992 * 109.53745 * 63.25048 * 16 14 12 27 27 H 1.09001 * 109.51599 * 303.05120 * 16 14 12 28 28 H 1.09000 * 109.48420 * 297.60962 * 17 16 14 29 29 H 1.09000 * 109.48163 * 177.58808 * 17 16 14 30 30 H 1.08997 * 109.48134 * 181.14152 * 19 18 17 31 31 H 1.09009 * 109.48013 * 301.16284 * 19 18 17 32 32 H 1.08997 * 109.51925 * 62.30110 * 20 19 18 33 33 H 1.09009 * 109.52140 * 182.48375 * 20 19 18 34 34 H 1.08999 * 117.49969 * 214.97147 * 21 9 7 35 35 H 1.09006 * 117.50149 * 359.97438 * 21 9 7 36 36 H 1.08998 * 117.49933 * 252.51054 * 22 21 9 37 37 H 1.08998 * 117.51741 * 107.47720 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0780 -1.1976 -0.1188 9 6 1.2602 -2.4940 0.1640 10 6 0.5763 -2.6960 1.5176 11 8 1.5351 -3.2271 2.4699 12 6 1.0690 -3.5559 3.6849 13 8 -0.1154 -3.4920 3.9153 14 6 2.0229 -4.0048 4.7618 15 9 3.0250 -3.0435 4.9320 16 6 2.6570 -5.3405 4.3605 17 6 3.5633 -5.8269 5.4943 18 8 2.7987 -5.9472 6.6957 19 6 2.2210 -4.7198 7.1449 20 6 1.2606 -4.1887 6.0776 21 6 0.5672 -3.0730 -1.0710 22 6 1.8372 -3.7308 -0.5276 23 1 -0.4851 0.8368 -0.0732 24 1 -0.2510 -3.3968 1.4057 25 1 0.1965 -1.7403 1.8790 26 1 3.2475 -5.2060 3.4544 27 1 1.8730 -6.0760 4.1798 28 1 4.3704 -5.1105 5.6473 29 1 3.9839 -6.7978 5.2324 30 1 1.6744 -4.8931 8.0719 31 1 3.0106 -3.9889 7.3197 32 1 0.4485 -4.9010 5.9316 33 1 0.8524 -3.2305 6.3992 34 1 -0.3760 -3.5978 -0.9192 35 1 0.6492 -2.5134 -2.0029 36 1 2.7549 -3.6042 -1.1019 37 1 1.7298 -4.6884 -0.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869729005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:27 Heat of formation + Delta-G solvation = -159.511426 kcal Electronic energy + Delta-G solvation = -21843.607409 eV Core-core repulsion = 18308.351776 eV Total energy + Delta-G solvation = -3535.255633 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.97015 -40.08304 -38.86933 -36.94220 -35.41019 -33.31302 -32.09644 -31.47098 -27.52370 -25.97501 -25.09714 -23.97209 -21.74651 -21.16463 -19.93958 -19.31409 -17.75012 -17.03192 -16.71222 -16.22637 -15.90066 -15.65154 -15.33659 -15.13395 -14.67273 -14.40983 -14.06828 -13.50625 -12.99892 -12.73171 -12.69575 -12.58500 -12.14888 -12.02044 -11.70649 -11.61051 -10.99601 -10.97058 -10.90982 -10.76634 -10.58755 -10.36275 -10.19842 -9.99421 -9.83098 -9.49490 -8.93439 -8.62720 -8.27931 -6.12883 -4.18250 2.33930 2.89587 3.27509 3.32590 3.35830 3.63058 4.11199 4.13946 4.34230 4.55117 4.62695 4.72670 4.97088 5.08230 5.13750 5.29234 5.38314 5.40339 5.45212 5.48356 5.76046 5.77974 5.89449 5.95227 6.17564 6.26193 6.47993 6.57767 6.63804 6.90811 6.93873 7.08661 7.27687 7.35167 7.81225 8.11310 8.30535 8.81534 9.46406 10.95524 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.005230 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.970857 B = 5352.497227 C = 5725.676549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.493 4.493 8 H 0.064 0.936 9 C 0.042 3.958 10 C 0.113 3.887 11 O -0.332 6.332 12 C 0.441 3.559 13 O -0.501 6.501 14 C 0.137 3.863 15 F -0.181 7.181 16 C -0.176 4.176 17 C 0.063 3.937 18 O -0.381 6.381 19 C 0.062 3.938 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.197 4.197 23 H 0.264 0.736 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 -9.983 10.660 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.530 4.530 8 H 0.082 0.918 9 C 0.041 3.959 10 C 0.040 3.960 11 O -0.247 6.247 12 C 0.281 3.719 13 O -0.390 6.390 14 C 0.117 3.883 15 F -0.162 7.162 16 C -0.214 4.214 17 C -0.014 4.014 18 O -0.300 6.300 19 C -0.015 4.015 20 C -0.202 4.202 21 C -0.199 4.199 22 C -0.234 4.234 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.891 -9.961 10.827 15.218 hybrid contribution 0.180 1.413 -0.373 1.472 sum 4.070 -8.548 10.453 14.103 Atomic orbital electron populations 1.69938 1.05963 1.27325 1.48709 1.25025 0.94895 0.99213 0.94348 0.86617 0.79674 0.82685 0.78895 1.20053 1.21162 1.19957 1.20431 0.93322 0.88474 1.50777 0.91798 1.18787 0.98229 0.92360 0.86509 1.23064 0.88095 0.97535 0.87257 1.86544 1.44397 1.72356 1.21387 1.23645 0.88499 0.75323 0.84408 1.90644 1.17508 1.49188 1.81628 1.20759 0.85485 0.88174 0.93869 1.92941 1.61788 1.65200 1.96259 1.22828 1.02110 0.94743 1.01678 1.22600 0.92782 1.02661 0.83368 1.87938 1.68692 1.31679 1.41642 1.22621 0.95681 0.86680 0.96515 1.22678 0.99630 1.05053 0.92866 1.22766 0.93685 1.03397 1.00071 1.22822 0.97581 0.96802 1.06242 0.92609 0.93751 0.89553 0.87777 0.88643 0.91982 0.87673 0.87719 0.92164 0.88042 0.88695 0.91595 0.89507 0.90054 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.85 12.58 55.43 0.70 -24.15 16 2 C 0.07 1.87 5.23 -17.82 -0.09 1.78 16 3 Si 0.89 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.49 -13.42 8.82 -34.44 -0.30 -13.72 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.04 1.03 1.55 -155.66 -0.24 0.79 16 10 C 0.11 2.73 5.38 37.15 0.20 2.93 16 11 O -0.33 -7.30 10.15 -39.25 -0.40 -7.69 16 12 C 0.44 8.53 6.93 36.01 0.25 8.77 16 13 O -0.50 -10.54 15.59 -18.75 -0.29 -10.83 16 14 C 0.14 2.05 1.18 -91.57 -0.11 1.95 16 15 F -0.18 -2.96 16.06 2.25 0.04 -2.93 16 16 C -0.18 -2.13 5.19 -26.58 -0.14 -2.27 16 17 C 0.06 0.64 6.72 37.20 0.25 0.89 16 18 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 19 C 0.06 0.63 6.72 37.20 0.25 0.88 16 20 C -0.16 -2.04 4.57 -26.60 -0.12 -2.16 16 21 C -0.16 -3.68 9.88 -26.73 -0.26 -3.94 16 22 C -0.20 -4.23 9.89 -26.73 -0.26 -4.49 16 23 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 24 H 0.04 1.03 7.74 -51.93 -0.40 0.63 16 25 H 0.09 2.33 7.26 -51.93 -0.38 1.95 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 29 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.60 7.93 -51.92 -0.41 0.18 16 32 H 0.10 1.25 7.95 -51.93 -0.41 0.84 16 33 H 0.09 1.18 8.14 -51.92 -0.42 0.75 16 34 H 0.07 1.40 8.06 -51.93 -0.42 0.99 16 35 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -30.09 316.22 -6.54 -36.63 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.36 Total: 1.43 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -0.59 Total: -8.59 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.70 Total: -24.15 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.07 Total: -23.23 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.09 -6.54 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869729005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.879 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds