Wall clock time and date at job start Mon Mar 30 2020 00:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00461 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00316 * 3 2 1 7 7 C 1.37879 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00139 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21573 * 120.00276 * 359.72080 * 11 10 9 13 13 C 1.47671 * 119.99579 * 179.72385 * 11 10 9 14 14 C 1.40225 * 120.49319 * 179.71728 * 13 11 10 15 15 C 1.38025 * 118.35681 * 179.79913 * 14 13 11 16 16 C 1.39166 * 119.25577 * 0.46021 * 15 14 13 17 17 N 1.39488 * 119.53142 * 179.76533 * 16 15 14 18 18 C 1.35918 * 126.10420 * 180.02562 * 17 16 15 19 19 C 1.35243 * 107.60438 * 179.97438 * 18 17 16 20 20 C 1.40000 * 107.96980 * 0.02562 * 19 18 17 21 21 N 1.30793 * 108.38021 * 359.73967 * 20 19 18 22 22 N 1.32447 * 120.93305 * 359.77940 * 16 15 14 23 23 C 1.31624 * 121.80845 * 359.97438 * 22 16 15 24 24 H 0.97001 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 28 28 H 1.08008 * 120.82506 * 359.97438 * 14 13 11 29 29 H 1.08006 * 120.37628 * 180.19257 * 15 14 13 30 30 H 1.08004 * 126.19816 * 0.02562 * 18 17 16 31 31 H 1.08003 * 126.01191 * 179.97438 * 19 18 17 32 32 H 1.08005 * 125.80929 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.68493 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0022 11 6 5.3249 -2.8217 0.0028 12 8 6.1150 -1.8976 0.0031 13 6 5.8170 -4.2140 0.0078 14 6 7.1934 -4.4821 0.0071 15 6 7.6046 -5.7997 0.0162 16 6 6.6482 -6.8106 0.0160 17 7 7.0573 -8.1442 0.0202 18 6 6.2424 -9.2319 0.0200 19 6 7.0288 -10.3322 0.0243 20 6 8.3634 -9.9092 0.0278 21 7 8.3815 -8.6014 0.0201 22 7 5.3550 -6.5245 0.0115 23 6 4.9193 -5.2824 0.0077 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0021 28 1 7.9140 -3.6776 0.0025 29 1 8.6567 -6.0435 0.0191 30 1 5.1624 -9.2199 0.0162 31 1 6.6873 -11.3568 0.0257 32 1 9.2304 -10.5532 0.0312 33 1 3.8569 -5.0883 0.0037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871595641.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:18 Heat of formation + Delta-G solvation = 67.523903 kcal Electronic energy + Delta-G solvation = -19046.169299 eV Core-core repulsion = 15880.280289 eV Total energy + Delta-G solvation = -3165.889010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.64931 -41.49995 -40.01817 -36.30287 -34.91155 -34.39660 -33.74765 -31.62698 -31.02653 -29.54058 -26.01117 -25.09558 -24.04651 -22.54530 -21.86209 -21.55011 -19.81250 -19.39376 -18.26102 -17.82951 -16.75575 -16.70818 -16.36516 -16.25151 -16.09420 -15.51543 -15.07190 -14.76034 -14.64784 -14.36092 -14.25762 -14.07122 -13.92367 -13.69375 -13.07220 -12.71131 -11.95384 -11.92654 -11.65612 -11.58767 -11.37363 -11.18760 -10.91449 -10.81985 -10.30042 -10.04578 -9.40840 -8.39002 -6.46360 -0.83867 -0.05021 0.81199 0.99168 1.34662 1.37279 1.48980 1.78995 1.83412 2.23196 2.29684 2.64668 2.96843 3.03038 3.33773 3.53949 3.67389 3.82734 4.02476 4.07183 4.35470 4.48578 4.63870 4.72049 4.80699 4.92088 5.01907 5.02878 5.14176 5.24657 5.39478 5.56979 5.92833 6.06484 6.20941 6.53237 6.67484 6.71583 7.11011 7.26265 8.75493 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045545 B = 0.003272 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.622598 B = 8556.229022 C = 9155.697607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.230 3.770 10 N -0.695 5.695 11 C 0.555 3.445 12 O -0.585 6.585 13 C -0.205 4.205 14 C 0.010 3.990 15 C -0.172 4.172 16 C 0.381 3.619 17 N -0.346 5.346 18 C 0.059 3.941 19 C -0.253 4.253 20 C 0.073 3.927 21 N -0.319 5.319 22 N -0.516 5.516 23 C 0.180 3.820 24 H 0.272 0.728 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.409 0.591 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.194 0.806 31 H 0.189 0.811 32 H 0.231 0.769 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.090 -20.434 0.043 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.107 3.893 10 N -0.345 5.345 11 C 0.342 3.658 12 O -0.467 6.467 13 C -0.211 4.211 14 C -0.016 4.016 15 C -0.194 4.194 16 C 0.154 3.846 17 N -0.124 5.124 18 C -0.080 4.080 19 C -0.281 4.281 20 C -0.116 4.116 21 N -0.137 5.137 22 N -0.229 5.229 23 C 0.020 3.980 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.246 0.754 28 H 0.181 0.819 29 H 0.183 0.817 30 H 0.211 0.789 31 H 0.206 0.794 32 H 0.248 0.752 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 15.532 -19.250 0.036 24.735 hybrid contribution -0.451 0.611 -0.011 0.760 sum 15.081 -18.639 0.026 23.976 Atomic orbital electron populations 1.69983 1.07713 1.28617 1.50615 1.25585 0.95515 1.02657 0.93585 0.85878 0.79368 0.79336 0.79456 1.19014 1.20049 1.18155 1.21276 0.89801 0.94723 1.52732 0.91948 1.19204 0.93517 0.80312 0.96272 1.45941 1.06124 1.10315 1.72075 1.18298 0.82514 0.88481 0.76464 1.90722 1.56216 1.46815 1.52917 1.20878 0.96067 0.93578 1.10564 1.21742 0.94609 0.96848 0.88413 1.21630 1.01754 0.90829 1.05164 1.18147 0.89784 0.82711 0.93991 1.45906 1.05791 1.03083 1.57646 1.23453 0.99596 0.85736 0.99228 1.22142 0.91939 1.00668 1.13327 1.24959 1.00169 0.91356 0.95101 1.77460 0.95358 1.14633 1.26291 1.66946 1.14373 1.23522 1.18089 1.23024 1.00923 0.84573 0.89453 0.91857 0.96315 0.96427 0.75401 0.81904 0.81689 0.78896 0.79401 0.75235 0.79225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 2 C 0.03 1.50 5.47 84.65 0.46 1.96 16 3 Si 0.94 43.05 27.47 68.60 1.88 44.94 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 7 C -0.55 -29.32 9.83 25.60 0.25 -29.07 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 9 C 0.23 10.90 4.50 85.63 0.38 11.28 16 10 N -0.70 -26.76 5.50 -469.86 -2.58 -29.35 16 11 C 0.56 20.42 7.77 86.74 0.67 21.09 16 12 O -0.58 -25.50 16.41 -3.95 -0.06 -25.57 16 13 C -0.20 -5.84 5.89 -19.99 -0.12 -5.96 16 14 C 0.01 0.26 9.70 22.70 0.22 0.48 16 15 C -0.17 -4.01 9.68 22.44 0.22 -3.79 16 16 C 0.38 9.55 7.55 132.89 1.00 10.55 16 17 N -0.35 -7.94 3.80 -192.18 -0.73 -8.67 16 18 C 0.06 1.06 11.09 83.37 0.92 1.99 16 19 C -0.25 -3.25 10.80 22.01 0.24 -3.01 16 20 C 0.07 1.00 12.02 85.27 1.02 2.02 16 21 N -0.32 -6.76 11.81 -56.96 -0.67 -7.43 16 22 N -0.52 -12.97 9.83 -191.84 -1.88 -14.86 16 23 C 0.18 4.48 10.71 85.04 0.91 5.39 16 24 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 26 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 27 H 0.41 13.43 6.37 -92.71 -0.59 12.84 16 28 H 0.16 3.85 7.73 -2.91 -0.02 3.83 16 29 H 0.17 3.38 7.67 -2.91 -0.02 3.36 16 30 H 0.19 2.89 8.05 -2.91 -0.02 2.87 16 31 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.23 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.19 3.94 6.41 -2.91 -0.02 3.92 16 Total: -1.00 -70.59 297.80 2.95 -67.64 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.51 Total: 14.75 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.19 Total: 12.95 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -5.57 Total: -114.71 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Total: -70.59 2.95 -67.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871595641.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.164 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds