Wall clock time and date at job start Mon Mar 30 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34222 * 117.00204 * 2 1 4 4 O 1.20826 * 119.99956 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00161 * 180.02562 * 3 2 1 6 6 H 1.08995 * 111.01744 * 55.77525 * 5 3 2 7 7 C 1.55503 * 111.32860 * 291.37655 * 5 3 2 8 8 O 1.43649 * 105.17486 * 205.70631 * 7 5 3 9 9 C 1.43232 * 109.97368 * 24.43551 * 8 7 5 10 10 H 1.09009 * 109.83173 * 238.77615 * 9 8 7 11 11 C 1.53003 * 109.90984 * 117.84511 * 9 8 7 12 12 C 1.53005 * 109.47097 * 66.81647 * 11 9 8 13 13 C 1.50695 * 109.46893 * 180.02562 * 12 11 9 14 14 O 1.21212 * 120.00225 * 0.02562 * 13 12 11 15 15 O 1.34313 * 120.00004 * 180.02562 * 13 12 11 16 16 C 1.34916 * 117.00416 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99526 * 359.97438 * 16 15 13 18 18 C 1.38755 * 120.00300 * 180.02562 * 16 15 13 19 19 N 1.31440 * 119.99614 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47191 * 119.99773 * 20 18 16 23 23 H 1.48499 * 109.47147 * 239.99605 * 20 18 16 24 24 C 1.54382 * 107.59109 * 358.28680 * 9 8 7 25 25 H 1.08998 * 109.46757 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47005 * 299.99690 * 1 2 3 27 27 H 1.08995 * 109.46992 * 60.00211 * 1 2 3 28 28 H 1.08999 * 110.28337 * 86.78035 * 7 5 3 29 29 H 1.09000 * 110.37770 * 324.67994 * 7 5 3 30 30 H 1.08997 * 109.47178 * 186.82104 * 11 9 8 31 31 H 1.08997 * 109.46718 * 306.82180 * 11 9 8 32 32 H 1.08999 * 109.46988 * 300.00410 * 12 11 9 33 33 H 1.09001 * 109.46582 * 59.99984 * 12 11 9 34 34 H 0.97005 * 119.99774 * 180.02562 * 19 18 16 35 35 H 1.09002 * 110.84829 * 96.83531 * 24 9 8 36 36 H 1.09001 * 110.84937 * 220.25631 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9864 0.7239 -0.8421 7 6 4.1594 0.7768 1.3479 8 8 5.4268 1.4420 1.4699 9 6 5.4201 2.6518 0.7032 10 1 6.2164 2.6227 -0.0407 11 6 5.6172 3.8553 1.6273 12 6 7.0254 3.8148 2.2242 13 6 7.2192 4.9997 3.1348 14 8 6.3200 5.7973 3.2913 15 8 8.3884 5.1721 3.7731 16 6 8.4958 6.2528 4.5735 17 1 7.6631 6.9326 4.6775 18 6 9.6765 6.4914 5.2623 19 7 10.6900 5.6642 5.1353 20 14 9.8254 7.9881 6.3700 21 1 8.5536 8.7541 6.3409 22 1 10.1063 7.5489 7.7605 23 1 10.9346 8.8508 5.8899 24 6 4.0496 2.7508 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 4.3001 -0.3037 1.3228 29 1 3.5058 1.0535 2.1752 30 1 5.4904 4.7756 1.0573 31 1 4.8810 3.8210 2.4304 32 1 7.1520 2.8943 2.7942 33 1 7.7615 3.8489 1.4210 34 1 11.5153 5.8308 5.6172 35 1 3.3666 3.3825 0.5675 36 1 4.1624 3.1220 -1.0191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873472217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:13 Heat of formation + Delta-G solvation = -220.751181 kcal Electronic energy + Delta-G solvation = -20530.686528 eV Core-core repulsion = 16980.402551 eV Total energy + Delta-G solvation = -3550.283977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09475 -39.50541 -38.77662 -36.84442 -35.30661 -33.18441 -32.72308 -32.05925 -29.22563 -27.92532 -25.61056 -24.26018 -23.66010 -21.08695 -20.74406 -19.53123 -18.11840 -17.64122 -17.28467 -17.10880 -16.44790 -16.30510 -15.48260 -14.93936 -14.58719 -14.30782 -14.20209 -14.01162 -13.66632 -13.42001 -12.97807 -12.59521 -12.47999 -12.35166 -11.73275 -11.70621 -11.47342 -11.22221 -11.18058 -11.13629 -10.91878 -10.80137 -10.59522 -10.35363 -10.27698 -9.71493 -9.62876 -8.91834 -8.51424 -6.34201 -4.01763 1.78268 2.25822 3.14898 3.23061 3.30874 3.60901 3.64876 3.91399 4.00561 4.40995 4.47302 4.61350 4.70347 4.73661 4.80886 4.89620 5.02905 5.14620 5.18514 5.34036 5.37785 5.52391 5.54337 5.62332 5.74149 5.92280 5.98470 6.08370 6.42802 6.55492 6.85767 6.92979 7.34069 7.47178 8.03451 8.81040 9.14997 9.95678 10.84264 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.048194 B = 0.002946 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.847939 B = 9500.857600 C = 9724.571010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.498 6.498 5 C -0.123 4.123 6 H 0.125 0.875 7 C 0.069 3.931 8 O -0.364 6.364 9 C 0.081 3.919 10 H 0.090 0.910 11 C -0.113 4.113 12 C -0.100 4.100 13 C 0.398 3.602 14 O -0.561 6.561 15 O -0.218 6.218 16 C -0.381 4.381 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.867 5.867 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.136 4.136 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.097 0.903 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.099 -13.170 -12.122 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.315 3.685 4 O -0.385 6.385 5 C -0.142 4.142 6 H 0.143 0.857 7 C -0.008 4.008 8 O -0.284 6.284 9 C 0.024 3.976 10 H 0.108 0.892 11 C -0.151 4.151 12 C -0.138 4.138 13 C 0.244 3.756 14 O -0.458 6.458 15 O -0.125 6.125 16 C -0.457 4.457 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.505 5.505 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.174 4.174 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.156 -12.752 -11.866 23.089 hybrid contribution -0.321 0.814 0.371 0.951 sum -15.477 -11.937 -11.495 22.676 Atomic orbital electron populations 1.23308 0.76024 1.03865 1.02742 1.86509 1.23677 1.33238 1.84005 1.23293 0.91344 0.81466 0.72356 1.90702 1.66911 1.36318 1.44544 1.22892 0.88040 1.00499 1.02817 0.85672 1.23339 0.85884 0.98329 0.93276 1.88532 1.32436 1.36139 1.71245 1.22904 0.96645 0.85213 0.92853 0.89224 1.21739 0.97101 0.96743 0.99477 1.21024 0.97543 0.96688 0.98517 1.23307 0.82260 0.87521 0.82469 1.90541 1.43516 1.46639 1.65153 1.83888 1.33177 1.44283 1.51142 1.21259 1.00892 1.01288 1.22279 0.88771 1.25327 0.94386 0.98942 0.97691 1.70009 1.03577 1.36009 1.40862 0.85634 0.78714 0.79963 0.79056 1.19019 1.20226 1.20227 1.23205 0.97042 0.93767 1.03344 0.87907 0.91684 0.91815 0.88316 0.91692 0.90007 0.90645 0.88535 0.89271 0.92234 0.88475 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.16 10.56 -39.24 -0.41 -3.58 16 3 C 0.47 4.87 7.30 36.01 0.26 5.13 16 4 O -0.50 -6.57 15.46 -18.75 -0.29 -6.86 16 5 C -0.12 -1.09 3.62 -89.22 -0.32 -1.41 16 6 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 7 C 0.07 0.67 7.27 38.49 0.28 0.95 16 8 O -0.36 -4.66 10.66 -35.23 -0.38 -5.03 16 9 C 0.08 0.96 3.51 -26.01 -0.09 0.87 16 10 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 11 C -0.11 -1.75 4.07 -26.73 -0.11 -1.86 16 12 C -0.10 -1.85 5.72 -27.88 -0.16 -2.01 16 13 C 0.40 10.09 7.91 36.00 0.28 10.37 16 14 O -0.56 -15.42 15.22 -19.05 -0.29 -15.71 16 15 O -0.22 -6.45 9.75 -20.70 -0.20 -6.65 16 16 C -0.38 -11.62 9.65 30.92 0.30 -11.33 16 17 H 0.09 2.90 6.86 -52.49 -0.36 2.54 16 18 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 19 N -0.87 -26.07 13.67 55.48 0.76 -25.32 16 20 Si 0.94 21.85 29.55 -169.99 -5.02 16.83 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 C -0.14 -1.39 5.69 -24.78 -0.14 -1.53 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.66 8.03 -51.93 -0.42 0.25 16 30 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.10 1.74 7.90 -51.93 -0.41 1.33 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 1.16 7.07 -51.93 -0.37 0.79 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -36.40 316.45 -4.71 -41.11 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.91 Total: -1.10 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 1.27 Total: 1.54 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.76 Total: -25.32 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.57 Total: -37.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.40 -4.71 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873472217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.641 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds