Wall clock time and date at job start Mon Mar 30 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34222 * 117.00204 * 2 1 4 4 O 1.20826 * 119.99956 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00161 * 180.02562 * 3 2 1 6 6 H 1.08995 * 111.01744 * 55.77525 * 5 3 2 7 7 C 1.55503 * 111.32860 * 291.37655 * 5 3 2 8 8 O 1.43649 * 105.17486 * 205.70631 * 7 5 3 9 9 C 1.43232 * 109.97368 * 24.43551 * 8 7 5 10 10 H 1.09009 * 109.83173 * 238.77615 * 9 8 7 11 11 C 1.53003 * 109.90984 * 117.84511 * 9 8 7 12 12 C 1.53005 * 109.47097 * 66.81647 * 11 9 8 13 13 C 1.50695 * 109.46893 * 180.02562 * 12 11 9 14 14 O 1.21212 * 120.00225 * 0.02562 * 13 12 11 15 15 O 1.34313 * 120.00004 * 180.02562 * 13 12 11 16 16 C 1.34916 * 117.00416 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99526 * 359.97438 * 16 15 13 18 18 C 1.38755 * 120.00300 * 180.02562 * 16 15 13 19 19 N 1.31440 * 119.99614 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47191 * 119.99773 * 20 18 16 23 23 H 1.48499 * 109.47147 * 239.99605 * 20 18 16 24 24 C 1.54382 * 107.59109 * 358.28680 * 9 8 7 25 25 H 1.08998 * 109.46757 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47005 * 299.99690 * 1 2 3 27 27 H 1.08995 * 109.46992 * 60.00211 * 1 2 3 28 28 H 1.08999 * 110.28337 * 86.78035 * 7 5 3 29 29 H 1.09000 * 110.37770 * 324.67994 * 7 5 3 30 30 H 1.08997 * 109.47178 * 186.82104 * 11 9 8 31 31 H 1.08997 * 109.46718 * 306.82180 * 11 9 8 32 32 H 1.08999 * 109.46988 * 300.00410 * 12 11 9 33 33 H 1.09001 * 109.46582 * 59.99984 * 12 11 9 34 34 H 0.97005 * 119.99774 * 180.02562 * 19 18 16 35 35 H 1.09002 * 110.84829 * 96.83531 * 24 9 8 36 36 H 1.09001 * 110.84937 * 220.25631 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9864 0.7239 -0.8421 7 6 4.1594 0.7768 1.3479 8 8 5.4268 1.4420 1.4699 9 6 5.4201 2.6518 0.7032 10 1 6.2164 2.6227 -0.0407 11 6 5.6172 3.8553 1.6273 12 6 7.0254 3.8148 2.2242 13 6 7.2192 4.9997 3.1348 14 8 6.3200 5.7973 3.2913 15 8 8.3884 5.1721 3.7731 16 6 8.4958 6.2528 4.5735 17 1 7.6631 6.9326 4.6775 18 6 9.6765 6.4914 5.2623 19 7 10.6900 5.6642 5.1353 20 14 9.8254 7.9881 6.3700 21 1 8.5536 8.7541 6.3409 22 1 10.1063 7.5489 7.7605 23 1 10.9346 8.8508 5.8899 24 6 4.0496 2.7508 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 4.3001 -0.3037 1.3228 29 1 3.5058 1.0535 2.1752 30 1 5.4904 4.7756 1.0573 31 1 4.8810 3.8210 2.4304 32 1 7.1520 2.8943 2.7942 33 1 7.7615 3.8489 1.4210 34 1 11.5153 5.8308 5.6172 35 1 3.3666 3.3825 0.5675 36 1 4.1624 3.1220 -1.0191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873472217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:12 Heat of formation + Delta-G solvation = -245.393035 kcal Electronic energy + Delta-G solvation = -20531.755079 eV Core-core repulsion = 16980.402551 eV Total energy + Delta-G solvation = -3551.352528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89382 -41.04277 -40.21108 -37.63152 -37.38840 -34.59198 -34.27745 -33.55149 -30.34697 -28.61206 -27.56939 -25.51071 -24.65531 -22.24028 -21.71360 -21.09786 -19.87741 -18.91570 -18.48947 -18.08646 -17.77467 -17.26679 -16.83316 -16.56436 -16.25407 -16.10547 -15.22325 -14.99282 -14.65649 -14.43640 -14.20528 -14.17221 -13.63628 -13.32988 -13.11085 -13.02863 -13.00363 -12.48260 -12.34799 -12.21665 -12.09104 -11.99806 -11.95358 -11.89915 -11.84496 -11.57558 -11.01835 -10.69979 -10.56874 -8.54233 -6.34324 1.00057 1.30137 1.33526 1.52248 1.59010 1.65961 2.12773 2.75442 2.83332 2.96724 3.15029 3.68387 3.74393 3.86582 4.03312 4.08301 4.16415 4.24482 4.28739 4.30631 4.53286 4.61125 4.68468 4.71299 4.72862 4.84057 4.91170 4.96960 5.13545 5.20202 5.26676 5.28805 5.83974 5.97665 6.59087 6.68444 6.91020 7.78424 8.67045 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.048194 B = 0.002946 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.847939 B = 9500.857600 C = 9724.571010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.476 3.524 4 O -0.534 6.534 5 C -0.113 4.113 6 H 0.159 0.841 7 C 0.064 3.936 8 O -0.384 6.384 9 C 0.089 3.911 10 H 0.116 0.884 11 C -0.108 4.108 12 C -0.089 4.089 13 C 0.392 3.608 14 O -0.587 6.587 15 O -0.248 6.248 16 C -0.423 4.423 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.903 5.903 20 Si 1.018 2.982 21 H -0.266 1.266 22 H -0.259 1.259 23 H -0.258 1.258 24 C -0.135 4.135 25 H 0.134 0.866 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.279 0.721 35 H 0.073 0.927 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -14.103 -12.967 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.320 3.680 4 O -0.424 6.424 5 C -0.132 4.132 6 H 0.176 0.824 7 C -0.012 4.012 8 O -0.303 6.303 9 C 0.032 3.968 10 H 0.134 0.866 11 C -0.146 4.146 12 C -0.126 4.126 13 C 0.241 3.759 14 O -0.486 6.486 15 O -0.157 6.157 16 C -0.499 4.499 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.541 5.541 20 Si 0.837 3.163 21 H -0.191 1.191 22 H -0.184 1.184 23 H -0.182 1.182 24 C -0.172 4.172 25 H 0.152 0.848 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.047 -13.727 -12.727 24.017 hybrid contribution -0.457 1.020 0.606 1.272 sum -15.505 -12.707 -12.121 23.426 Atomic orbital electron populations 1.23583 0.74668 1.05899 1.02496 1.86503 1.25038 1.32319 1.83442 1.23556 0.91875 0.81321 0.71291 1.90694 1.67779 1.37520 1.46370 1.22908 0.87113 0.99702 1.03431 0.82371 1.23494 0.84771 0.99529 0.93429 1.88511 1.33811 1.36255 1.71749 1.22863 0.98491 0.83375 0.92108 0.86639 1.21732 0.94413 0.98988 0.99446 1.21192 1.00150 0.93431 0.97841 1.24719 0.80720 0.88648 0.81811 1.90507 1.44017 1.48159 1.65898 1.83913 1.35234 1.44452 1.52071 1.21442 1.01602 1.02301 1.24512 0.90348 1.26559 0.93222 1.02303 0.98497 1.70084 1.04332 1.37933 1.41750 0.84565 0.79042 0.75507 0.77185 1.19062 1.18355 1.18198 1.23152 0.95505 0.94609 1.03950 0.84758 0.92318 0.91762 0.85740 0.92949 0.90247 0.92949 0.87743 0.86551 0.91164 0.90863 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.66 10.56 -51.34 -0.54 -6.20 16 3 C 0.48 9.15 7.30 71.24 0.52 9.67 16 4 O -0.53 -13.96 15.46 21.96 0.34 -13.62 16 5 C -0.11 -1.73 3.62 -9.88 -0.04 -1.77 16 6 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 7 C 0.06 1.14 7.27 72.84 0.53 1.67 16 8 O -0.38 -9.10 10.66 -148.98 -1.59 -10.69 16 9 C 0.09 1.94 3.51 31.06 0.11 2.05 16 10 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 11 C -0.11 -3.33 4.07 30.60 0.12 -3.20 16 12 C -0.09 -3.25 5.72 29.85 0.17 -3.08 16 13 C 0.39 20.45 7.91 71.23 0.56 21.02 16 14 O -0.59 -33.45 15.22 20.77 0.32 -33.13 16 15 O -0.25 -15.18 9.75 14.89 0.15 -15.04 16 16 C -0.42 -26.61 9.65 67.94 0.66 -25.95 16 17 H 0.08 5.03 6.86 -2.91 -0.02 5.01 16 18 C -0.01 -0.34 5.49 84.87 0.47 0.12 16 19 N -0.90 -54.65 13.67 21.62 0.30 -54.35 16 20 Si 1.02 44.62 29.55 68.60 2.03 46.65 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 C -0.13 -2.52 5.69 31.86 0.18 -2.34 16 25 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 27 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 28 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.04 8.03 -2.39 -0.02 1.03 16 30 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 31 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.10 3.71 7.90 -2.39 -0.02 3.69 16 33 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.28 15.19 8.31 -92.70 -0.77 14.42 16 35 H 0.07 1.75 7.07 -2.39 -0.02 1.73 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -81.42 316.45 6.56 -74.86 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.08 Total: 11.83 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.48 Total: -0.32 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.30 Total: -54.35 kcal Atomic # 8 Polarization: -77.35 SS G_CDS: -1.33 Total: -78.68 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -81.42 6.56 -74.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873472217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.531 kcal (2) G-P(sol) polarization free energy of solvation -81.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds