Wall clock time and date at job start Mon Mar 30 2020 01:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99691 * 2 1 4 4 H 1.48504 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47092 * 299.99535 * 3 2 1 6 6 H 1.48503 * 109.47394 * 59.99700 * 3 2 1 7 7 C 1.37872 * 120.00608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00472 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99689 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47314 * 179.97438 * 9 7 2 11 11 C 1.81394 * 103.00248 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47140 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.54487 * 61.40398 * 12 11 10 14 14 C 1.55024 * 110.60699 * 184.42920 * 12 11 10 15 15 C 1.54883 * 102.09539 * 155.37197 * 14 12 11 16 16 C 1.53835 * 104.07475 * 339.12920 * 15 14 12 17 17 C 1.52878 * 109.75390 * 238.48031 * 16 15 14 18 18 C 1.53148 * 109.17181 * 183.09871 * 17 16 15 19 19 O 1.42904 * 109.39318 * 57.05322 * 18 17 16 20 20 C 1.42914 * 114.16786 * 298.57663 * 19 18 17 21 21 C 1.52888 * 109.74450 * 117.68836 * 16 15 14 22 22 O 1.43453 * 107.60894 * 358.09124 * 16 15 14 23 23 H 0.96995 * 119.99945 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47212 * 60.00166 * 9 7 2 25 25 H 1.08993 * 109.47457 * 299.99762 * 9 7 2 26 26 H 1.09003 * 109.47154 * 59.99718 * 11 10 9 27 27 H 1.09008 * 109.47302 * 300.00081 * 11 10 9 28 28 H 1.09012 * 110.90686 * 273.56737 * 14 12 11 29 29 H 1.08996 * 110.91096 * 37.16997 * 14 12 11 30 30 H 1.08994 * 110.50926 * 220.48066 * 15 14 12 31 31 H 1.09004 * 110.50977 * 97.77456 * 15 14 12 32 32 H 1.09007 * 109.51487 * 63.19694 * 17 16 15 33 33 H 1.08994 * 109.52232 * 303.01300 * 17 16 15 34 34 H 1.09002 * 109.48686 * 177.03394 * 18 17 16 35 35 H 1.09002 * 109.48865 * 297.07424 * 18 17 16 36 36 H 1.08996 * 109.46890 * 301.45687 * 20 19 18 37 37 H 1.08992 * 109.49917 * 181.42042 * 20 19 18 38 38 H 1.09004 * 109.51577 * 296.81710 * 21 16 15 39 39 H 1.08995 * 109.52433 * 56.99849 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3519 -5.3366 -0.0003 12 6 2.2088 -6.6042 0.0003 13 1 2.8272 -6.6475 0.8969 14 6 1.3159 -7.8664 -0.1124 15 6 2.2917 -8.9004 -0.7270 16 6 3.3876 -8.0393 -1.3783 17 6 3.4717 -8.3532 -2.8721 18 6 4.6169 -7.5468 -3.4917 19 8 5.8352 -7.8518 -2.8099 20 6 5.8266 -7.5199 -1.4199 21 6 4.7335 -8.3252 -0.7116 22 8 3.0296 -6.6635 -1.1869 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 0.7230 -5.3231 -0.8904 27 1 0.7223 -5.3237 0.8896 28 1 0.9745 -8.1905 0.8708 29 1 0.4705 -7.6869 -0.7765 30 1 1.7840 -9.5049 -1.4785 31 1 2.7164 -9.5344 0.0514 32 1 2.5326 -8.0820 -3.3546 33 1 3.6593 -9.4179 -3.0106 34 1 4.7154 -7.8061 -4.5459 35 1 4.4043 -6.4819 -3.3976 36 1 5.6279 -6.4548 -1.3019 37 1 6.7959 -7.7595 -0.9827 38 1 4.6890 -8.0344 0.3380 39 1 4.9584 -9.3891 -0.7864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882176950.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:12 Heat of formation + Delta-G solvation = -111.438484 kcal Electronic energy + Delta-G solvation = -19279.034546 eV Core-core repulsion = 16312.076689 eV Total energy + Delta-G solvation = -2966.957858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57190 -37.91957 -33.31825 -33.11021 -32.28412 -31.21700 -29.49215 -28.47409 -25.16589 -23.84475 -23.12268 -22.09238 -21.10494 -19.74781 -16.67052 -16.57057 -16.33320 -15.99117 -15.42378 -15.11740 -14.82128 -14.53012 -14.46590 -13.89921 -13.38268 -13.02549 -12.64982 -12.44904 -12.38708 -12.36885 -11.94144 -11.88686 -11.66206 -11.47661 -11.30666 -11.21488 -10.87325 -10.66928 -10.56814 -10.29011 -9.87190 -9.55171 -9.46312 -9.43711 -8.75921 -8.59259 -6.57791 -6.16871 -4.20415 2.65590 3.26865 3.33923 3.40910 3.76657 3.89168 3.93556 4.38092 4.40045 4.49437 4.58927 4.88321 4.93468 4.95908 5.08105 5.20434 5.24473 5.29880 5.30901 5.44886 5.55575 5.58836 5.62378 5.66519 5.69715 5.83226 5.84236 5.90729 5.96219 6.00739 6.15399 6.19930 7.05470 7.12867 7.15228 7.20633 7.78423 8.05191 8.81940 9.42498 10.94693 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.004173 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.409751 B = 6708.702687 C = 7341.374019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.086 3.914 10 S -0.289 6.289 11 C -0.087 4.087 12 C 0.099 3.901 13 H 0.075 0.925 14 C -0.147 4.147 15 C -0.143 4.143 16 C 0.099 3.901 17 C -0.142 4.142 18 C 0.061 3.939 19 O -0.387 6.387 20 C 0.063 3.937 21 C -0.163 4.163 22 O -0.340 6.340 23 H 0.264 0.736 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -19.681 -2.076 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.086 0.914 9 C -0.061 4.061 10 S -0.062 6.062 11 C -0.236 4.236 12 C 0.041 3.959 13 H 0.092 0.908 14 C -0.187 4.187 15 C -0.181 4.181 16 C 0.059 3.941 17 C -0.180 4.180 18 C -0.015 4.015 19 O -0.306 6.306 20 C -0.014 4.014 21 C -0.201 4.201 22 O -0.259 6.259 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.852 -19.425 -2.301 20.418 hybrid contribution -1.451 0.788 0.359 1.690 sum 4.401 -18.637 -1.942 19.248 Atomic orbital electron populations 1.69966 1.06150 1.27143 1.50036 1.24967 0.94962 0.99281 0.94731 0.86307 0.80145 0.82588 0.77697 1.19394 1.20748 1.20760 1.20729 0.93501 0.88767 1.51799 0.91442 1.21054 0.93896 0.91265 0.99857 1.86752 1.20313 1.01214 1.97928 1.23244 1.00109 0.95717 1.04501 1.22804 0.90771 0.93053 0.89313 0.90755 1.23207 0.98732 0.94823 1.01902 1.22975 0.96347 0.98245 1.00533 1.21840 0.93613 0.83439 0.95246 1.22268 1.00503 1.00925 0.94317 1.22549 0.83691 0.99507 0.95801 1.87861 1.35823 1.85191 1.21736 1.22520 0.98335 0.99325 0.81206 1.22597 0.95698 1.01188 1.00638 1.89065 1.69330 1.23101 1.44452 0.92625 0.94765 0.94844 0.90377 0.89823 0.90168 0.90280 0.90428 0.90615 0.90177 0.90392 0.89210 0.91809 0.91793 0.89272 0.90575 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.65 9.13 -34.44 -0.31 -14.97 16 8 H 0.07 1.96 7.71 -52.49 -0.40 1.55 16 9 C 0.09 2.29 5.70 36.01 0.21 2.50 16 10 S -0.29 -6.47 21.39 -107.50 -2.30 -8.77 16 11 C -0.09 -1.49 5.73 37.16 0.21 -1.28 16 12 C 0.10 1.39 3.31 -25.66 -0.08 1.31 16 13 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 14 C -0.15 -1.56 6.59 -24.67 -0.16 -1.73 16 15 C -0.14 -1.36 6.27 -25.30 -0.16 -1.52 16 16 C 0.10 1.14 0.72 -90.31 -0.06 1.08 16 17 C -0.14 -1.52 4.92 -26.72 -0.13 -1.66 16 18 C 0.06 0.73 6.72 37.23 0.25 0.98 16 19 O -0.39 -5.15 10.76 -35.23 -0.38 -5.53 16 20 C 0.06 0.77 6.72 37.23 0.25 1.02 16 21 C -0.16 -1.77 4.87 -26.72 -0.13 -1.90 16 22 O -0.34 -5.16 9.43 -35.23 -0.33 -5.49 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 27 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 30 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 31 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 32 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 36 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -30.95 324.68 -9.27 -40.22 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.64 Total: -1.94 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.23 Total: -14.43 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.71 Total: -11.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -2.30 Total: -8.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.95 -9.27 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882176950.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.214 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds