Wall clock time and date at job start Mon Mar 30 2020 01:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48503 * 109.47245 * 239.99872 * 3 2 1 5 5 H 1.48504 * 109.47344 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47353 * 119.99759 * 3 2 1 7 7 C 1.37873 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00314 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47434 * 179.97438 * 9 7 2 11 11 C 1.81400 * 103.00030 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46923 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.27056 * 304.36748 * 12 11 10 14 14 C 1.55533 * 110.36122 * 182.26484 * 12 11 10 15 15 C 1.55361 * 100.71269 * 204.73605 * 14 12 11 16 16 C 1.54155 * 102.36996 * 33.94711 * 15 14 12 17 17 C 1.52917 * 109.50901 * 218.85106 * 16 15 14 18 18 C 1.53158 * 109.16118 * 183.51891 * 17 16 15 19 19 O 1.42900 * 109.38228 * 57.11114 * 18 17 16 20 20 C 1.42908 * 114.16851 * 298.57199 * 19 18 17 21 21 C 1.52931 * 109.49573 * 98.46264 * 16 15 14 22 22 O 1.42992 * 107.85002 * 338.67143 * 16 15 14 23 23 H 0.97004 * 120.00618 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47123 * 59.99361 * 9 7 2 25 25 H 1.09003 * 109.46666 * 299.99864 * 9 7 2 26 26 H 1.09003 * 109.46933 * 60.00159 * 11 10 9 27 27 H 1.08994 * 109.47268 * 300.00397 * 11 10 9 28 28 H 1.08996 * 111.32685 * 86.86110 * 14 12 11 29 29 H 1.08997 * 111.14414 * 322.53691 * 14 12 11 30 30 H 1.09002 * 110.86280 * 275.67074 * 15 14 12 31 31 H 1.08996 * 110.85816 * 152.22449 * 15 14 12 32 32 H 1.08997 * 109.52732 * 303.42597 * 17 16 15 33 33 H 1.08998 * 109.52359 * 63.62160 * 17 16 15 34 34 H 1.08997 * 109.48156 * 297.13756 * 18 17 16 35 35 H 1.09002 * 109.49435 * 177.09180 * 18 17 16 36 36 H 1.08998 * 109.48882 * 301.46693 * 20 19 18 37 37 H 1.09003 * 109.49859 * 181.41606 * 20 19 18 38 38 H 1.09001 * 109.52291 * 296.40340 * 21 16 15 39 39 H 1.08996 * 109.52733 * 56.59833 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3367 0.0013 12 6 2.2086 -6.6042 0.0020 13 1 2.8983 -6.5942 -0.8419 14 6 1.3046 -7.8686 -0.0549 15 6 2.2432 -8.9240 0.5923 16 6 3.0132 -8.0871 1.6331 17 6 4.4734 -8.5393 1.6727 18 6 5.2100 -7.7645 2.7694 19 8 4.5510 -7.9713 4.0204 20 6 3.1987 -7.5102 4.0526 21 6 2.3764 -8.2744 3.0108 22 8 2.9339 -6.7152 1.2378 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 0.7222 -5.3237 -0.8885 27 1 0.7228 -5.3231 0.8914 28 1 1.0622 -8.1366 -1.0832 29 1 0.3997 -7.7319 0.5372 30 1 2.9237 -9.3443 -0.1481 31 1 1.6660 -9.7111 1.0774 32 1 4.5185 -9.6068 1.8879 33 1 4.9425 -8.3409 0.7090 34 1 5.2070 -6.7016 2.5282 35 1 6.2385 -8.1192 2.8372 36 1 3.1725 -6.4443 3.8260 37 1 2.7793 -7.6817 5.0440 38 1 1.3572 -7.8883 2.9966 39 1 2.3619 -9.3344 3.2644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882176951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:13 Heat of formation + Delta-G solvation = -130.633561 kcal Electronic energy + Delta-G solvation = -19268.536350 eV Core-core repulsion = 16300.746131 eV Total energy + Delta-G solvation = -2967.790219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47969 -38.93714 -35.31054 -34.34597 -33.30212 -32.09070 -30.75089 -30.46420 -26.21691 -25.16723 -24.69134 -23.04678 -22.34519 -20.60263 -18.67476 -17.75071 -17.43019 -17.13360 -16.94036 -16.35741 -16.17244 -15.71414 -15.45180 -14.88741 -14.78370 -14.53358 -14.31772 -14.22756 -13.76581 -13.35495 -13.15957 -12.90316 -12.82251 -12.73136 -12.53408 -12.42579 -12.29449 -12.22907 -11.86975 -11.54409 -11.36211 -11.16695 -10.76037 -10.73696 -10.41886 -10.36919 -8.43570 -8.34974 -6.48411 1.00624 1.38372 1.41797 1.50832 2.05192 2.35527 2.73448 2.95984 2.99287 3.47349 3.67031 3.69657 3.88773 4.03022 4.04551 4.08583 4.29081 4.34444 4.39048 4.46209 4.57166 4.70463 4.71128 4.75947 4.80865 4.88288 4.91124 4.91941 4.96090 5.01006 5.08835 5.11615 5.21301 5.29929 5.54821 5.87448 6.21050 6.24626 6.58431 7.19547 8.77051 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.004112 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.453492 B = 6807.849974 C = 7344.980180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.015 3.985 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.092 3.908 10 S -0.312 6.312 11 C -0.076 4.076 12 C 0.101 3.899 13 H 0.074 0.926 14 C -0.138 4.138 15 C -0.133 4.133 16 C 0.090 3.910 17 C -0.149 4.149 18 C 0.058 3.942 19 O -0.399 6.399 20 C 0.058 3.942 21 C -0.148 4.148 22 O -0.377 6.377 23 H 0.271 0.729 24 H 0.014 0.986 25 H 0.009 0.991 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.108 0.892 36 H 0.032 0.968 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -21.731 2.319 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.055 4.055 10 S -0.085 6.085 11 C -0.224 4.224 12 C 0.043 3.957 13 H 0.092 0.908 14 C -0.177 4.177 15 C -0.171 4.171 16 C 0.051 3.949 17 C -0.187 4.187 18 C -0.018 4.018 19 O -0.318 6.318 20 C -0.018 4.018 21 C -0.186 4.186 22 O -0.297 6.297 23 H 0.080 0.920 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.126 0.874 36 H 0.050 0.950 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.090 -21.489 2.589 22.235 hybrid contribution -1.425 1.301 -0.305 1.953 sum 3.665 -20.189 2.284 20.645 Atomic orbital electron populations 1.70048 1.07682 1.28664 1.50026 1.25920 0.95905 1.03057 0.93687 0.85328 0.78244 0.77153 0.79322 1.18993 1.19831 1.19276 1.20966 0.93342 0.90356 1.53029 0.92237 1.20707 0.94132 0.93057 0.97604 1.86621 1.21224 1.02669 1.97937 1.23503 0.99810 0.94288 1.04841 1.22790 0.92541 0.92728 0.87684 0.90848 1.23398 0.98290 0.92298 1.03707 1.23153 0.98245 0.97987 0.97710 1.22132 0.95641 0.82024 0.95121 1.22449 0.94727 1.01507 1.00002 1.22610 0.96871 0.98844 0.83504 1.87839 1.26243 1.83158 1.34596 1.22588 0.81922 0.96969 1.00331 1.22436 0.99796 1.02358 0.93993 1.88589 1.75653 1.25756 1.39687 0.92021 0.96736 0.97241 0.88578 0.90832 0.87648 0.89937 0.88993 0.87806 0.88308 0.90159 0.94840 0.87416 0.94960 0.87609 0.90468 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 2 C 0.02 0.87 5.46 84.65 0.46 1.33 16 3 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -32.00 9.13 25.60 0.23 -31.76 16 8 H 0.06 3.54 7.71 -2.91 -0.02 3.51 16 9 C 0.09 5.14 5.70 71.24 0.41 5.55 16 10 S -0.31 -14.42 21.51 -56.49 -1.21 -15.63 16 11 C -0.08 -2.59 5.68 71.98 0.41 -2.18 16 12 C 0.10 2.72 3.43 31.47 0.11 2.83 16 13 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 14 C -0.14 -2.43 6.62 32.28 0.21 -2.22 16 15 C -0.13 -1.96 6.05 31.80 0.19 -1.77 16 16 C 0.09 1.88 0.80 -10.45 -0.01 1.87 16 17 C -0.15 -2.84 4.99 30.62 0.15 -2.69 16 18 C 0.06 1.36 6.72 72.04 0.48 1.84 16 19 O -0.40 -10.33 10.76 -148.98 -1.60 -11.93 16 20 C 0.06 1.40 6.72 72.03 0.48 1.89 16 21 C -0.15 -2.92 4.99 30.62 0.15 -2.76 16 22 O -0.38 -11.16 9.42 -148.98 -1.40 -12.56 16 23 H 0.27 15.13 8.31 -92.70 -0.77 14.35 16 24 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 3.00 8.14 -2.39 -0.02 2.99 16 27 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.44 8.06 -2.39 -0.02 1.42 16 30 H 0.09 1.13 7.83 -2.39 -0.02 1.11 16 31 H 0.10 1.11 7.78 -2.39 -0.02 1.09 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.03 0.96 7.91 -2.39 -0.02 0.94 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.03 0.96 7.91 -2.39 -0.02 0.94 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 Total: -1.00 -68.93 325.31 2.38 -66.55 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.00 Total: 10.18 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.29 Total: -28.07 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.28 Total: -55.27 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -3.01 Total: -24.50 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -14.42 SS G_CDS: -1.21 Total: -15.63 kcal Total: -68.93 2.38 -66.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882176951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.088 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds