Wall clock time and date at job start Mon Mar 30 2020 00:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40307 * 120.48429 * 204.24818 * 3 2 1 5 5 C 1.36956 * 118.47457 * 180.30263 * 4 3 2 6 6 C 1.39251 * 119.39039 * 359.45476 * 5 4 3 7 7 N 1.39043 * 119.52158 * 180.28163 * 6 5 4 8 8 C 1.34782 * 119.99561 * 174.88864 * 7 6 5 9 9 O 1.21574 * 120.00150 * 5.10137 * 8 7 6 10 10 N 1.34781 * 119.99871 * 185.10271 * 8 7 6 11 11 C 1.47072 * 136.05548 * 359.62396 * 10 8 7 12 12 C 1.53757 * 87.88176 * 152.96555 * 11 10 8 13 13 C 1.50706 * 114.26297 * 139.79348 * 12 11 10 14 14 H 1.08000 * 119.99966 * 266.47737 * 13 12 11 15 15 C 1.37877 * 120.00083 * 86.47298 * 13 12 11 16 16 N 1.31515 * 120.00013 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00209 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47049 * 60.00453 * 17 15 13 19 19 H 1.48505 * 109.47524 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47242 * 300.00491 * 17 15 13 21 21 C 1.47064 * 136.05850 * 180.02562 * 10 8 7 22 22 N 1.32497 * 120.95196 * 0.55528 * 6 5 4 23 23 C 1.31702 * 121.65267 * 359.72546 * 22 6 5 24 24 H 1.07995 * 120.75951 * 0.02562 * 4 3 2 25 25 H 1.08002 * 120.30737 * 179.70598 * 5 4 3 26 26 H 0.97000 * 120.00512 * 354.89038 * 7 6 5 27 27 H 1.08989 * 113.46957 * 267.69824 * 11 10 8 28 28 H 1.09004 * 113.46530 * 38.14588 * 11 10 8 29 29 H 1.08994 * 114.39768 * 272.67633 * 12 11 10 30 30 H 0.97002 * 120.00473 * 179.97438 * 16 15 13 31 31 H 1.09003 * 113.46178 * 321.86000 * 21 10 8 32 32 H 1.08998 * 113.46829 * 92.24210 * 21 10 8 33 33 H 1.08002 * 119.74709 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2793 1.1034 0.4966 5 6 4.6480 1.0628 0.4711 6 6 5.2889 -0.0664 -0.0319 7 7 6.6784 -0.1129 -0.0537 8 6 7.3089 -1.2393 -0.4415 9 8 6.6661 -2.1824 -0.8602 10 7 8.6522 -1.3201 -0.3651 11 6 9.7439 -0.4316 0.0613 12 6 10.5611 -1.6904 0.3957 13 6 12.0176 -1.6013 0.0188 14 1 12.3515 -1.9739 -0.9383 15 6 12.9238 -1.0442 0.8960 16 7 12.5173 -0.5909 2.0617 17 14 14.7292 -0.9345 0.4292 18 1 14.8733 -0.1174 -0.8024 19 1 15.4891 -0.3002 1.5362 20 1 15.2606 -2.2991 0.1829 21 6 9.6716 -2.3328 -0.6779 22 7 4.5939 -1.0950 -0.4950 23 6 3.2768 -1.0955 -0.4944 24 1 2.7593 1.9662 0.8858 25 1 5.2250 1.8973 0.8414 26 1 7.1940 0.6651 0.2103 27 1 10.1672 0.1572 -0.7523 28 1 9.4965 0.1717 0.9347 29 1 10.3993 -2.0782 1.4013 30 1 13.1549 -0.1993 2.6790 31 1 9.3626 -3.3493 -0.4343 32 1 10.0751 -2.2453 -1.6866 33 1 2.7411 -1.9505 -0.8798 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889240996.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:58 Heat of formation + Delta-G solvation = 93.679942 kcal Electronic energy + Delta-G solvation = -19154.315363 eV Core-core repulsion = 15989.560564 eV Total energy + Delta-G solvation = -3164.754799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97609 -39.55535 -37.63303 -36.64553 -34.69341 -32.89570 -32.73601 -30.84509 -28.90651 -25.52315 -25.07379 -24.21269 -23.88117 -20.88923 -19.37516 -19.18249 -18.31845 -17.26526 -16.74421 -16.16864 -15.50124 -14.97727 -14.71001 -14.64219 -14.42594 -14.11058 -13.79780 -13.45442 -13.08930 -13.08758 -12.74785 -12.42604 -12.30003 -11.63450 -11.44090 -11.02657 -10.89869 -10.73992 -10.41897 -10.20455 -10.19780 -9.48689 -9.28365 -9.04516 -8.66203 -8.47351 -7.90328 -6.25851 -4.31752 0.45044 1.03596 2.44914 2.52427 2.75755 3.20657 3.26561 3.28864 3.47244 3.66623 3.87739 3.93734 4.26848 4.36408 4.49043 4.66604 4.86453 5.04083 5.37533 5.48578 5.69118 5.86073 5.98818 6.04826 6.10687 6.30806 6.36890 6.48947 6.57313 6.62139 7.09592 7.29408 7.47616 7.72069 7.87365 8.09378 8.47288 8.72544 8.90131 9.35650 10.83768 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.055478 B = 0.003142 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.580268 B = 8909.050230 C = 9265.832571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.269 3.731 3 C -0.140 4.140 4 C 0.006 3.994 5 C -0.217 4.217 6 C 0.422 3.578 7 N -0.662 5.662 8 C 0.712 3.288 9 O -0.542 6.542 10 N -0.661 5.661 11 C 0.094 3.906 12 C 0.038 3.962 13 C -0.519 4.519 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.886 5.886 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.123 3.877 22 N -0.473 5.473 23 C 0.196 3.804 24 H 0.145 0.855 25 H 0.147 0.853 26 H 0.417 0.583 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.265 0.735 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 5.785 -1.855 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.046 4.046 3 C -0.149 4.149 4 C -0.022 4.022 5 C -0.241 4.241 6 C 0.187 3.813 7 N -0.307 5.307 8 C 0.415 3.585 9 O -0.415 6.415 10 N -0.399 5.399 11 C -0.028 4.028 12 C 0.018 3.982 13 C -0.557 4.557 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.001 3.999 22 N -0.187 5.187 23 C 0.033 3.967 24 H 0.163 0.837 25 H 0.164 0.836 26 H 0.254 0.746 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.166 4.407 -2.331 14.078 hybrid contribution 1.273 1.447 0.300 1.951 sum -11.892 5.854 -2.031 13.410 Atomic orbital electron populations 1.81260 1.11978 1.07704 1.09591 1.25385 0.92214 0.93735 0.93292 1.16921 0.85504 0.99550 1.12884 1.21023 0.93039 0.96212 0.91931 1.21126 0.95069 0.99828 1.08104 1.18533 0.84326 0.89597 0.88828 1.42912 1.03419 1.16729 1.67680 1.15481 0.80987 0.82581 0.79420 1.90998 1.63976 1.36389 1.50087 1.49275 1.01358 1.22633 1.66614 1.23708 0.83795 0.97574 0.97764 1.20374 0.93001 0.90014 0.94784 1.20868 0.91004 1.40900 1.02892 0.91779 1.25026 0.99161 0.94690 0.94609 1.69932 1.35242 1.39313 1.07785 0.86580 0.84325 0.78580 0.78108 1.20049 1.21228 1.19993 1.23287 0.83930 0.91966 1.00756 1.67988 1.06995 1.25787 1.17957 1.22942 0.88631 0.95210 0.89907 0.83697 0.83552 0.74610 0.90742 0.92420 0.91204 0.92521 0.92225 0.90858 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.40 18.54 41.84 0.78 -4.63 16 2 C 0.27 2.80 15.37 -22.47 -0.35 2.45 16 3 C -0.14 -1.31 5.75 -106.69 -0.61 -1.92 16 4 C 0.01 0.04 9.85 -39.27 -0.39 -0.34 16 5 C -0.22 -1.88 9.86 -39.67 -0.39 -2.27 16 6 C 0.42 5.45 7.41 -154.85 -1.15 4.30 16 7 N -0.66 -9.33 5.38 -15.82 -0.09 -9.41 16 8 C 0.71 13.25 8.75 -86.91 -0.76 12.49 16 9 O -0.54 -11.80 15.36 5.30 0.08 -11.72 16 10 N -0.66 -12.42 3.69 -190.84 -0.70 -13.13 16 11 C 0.09 1.78 7.88 -8.36 -0.07 1.71 16 12 C 0.04 0.82 3.79 -91.11 -0.35 0.48 16 13 C -0.52 -12.49 8.83 -34.44 -0.30 -12.79 16 14 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.00 13.26 55.43 0.74 -22.27 16 17 Si 0.90 19.24 29.54 -169.99 -5.02 14.22 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 21 C 0.12 2.40 8.17 -8.50 -0.07 2.33 16 22 N -0.47 -6.95 7.85 -12.04 -0.09 -7.05 16 23 C 0.20 2.17 10.92 -17.10 -0.19 1.98 16 24 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 25 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 26 H 0.42 4.63 8.41 -40.82 -0.34 4.29 16 27 H 0.07 1.38 8.10 -51.94 -0.42 0.96 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 30 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 33 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 306.29 15.07 4.62 4.62 Total: -1.00 -30.41 306.29 -7.68 -38.08 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.26 Total: 1.26 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -4.71 Total: 10.02 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.63 Total: -56.48 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.41 -7.68 -38.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889240996.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.764 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds