Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21590 * 120.00297 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99768 * 180.02562 * 13 12 11 16 16 C 1.47337 * 121.36906 * 180.02562 * 15 13 12 17 17 C 1.53100 * 107.88859 * 118.16434 * 16 15 13 18 18 C 1.49970 * 110.40288 * 45.48968 * 17 16 15 19 19 C 1.29623 * 124.58581 * 340.99828 * 18 17 16 20 20 Cl 1.73600 * 118.18425 * 180.88142 * 19 18 17 21 21 C 1.47000 * 121.37313 * 359.72415 * 15 13 12 22 22 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 30 30 H 1.08996 * 109.77724 * 237.76810 * 16 15 13 31 31 H 1.09005 * 109.77804 * 358.57226 * 16 15 13 32 32 H 1.09004 * 109.30875 * 165.76913 * 17 16 15 33 33 H 1.08988 * 109.31851 * 285.38543 * 17 16 15 34 34 H 1.07996 * 117.70654 * 161.02129 * 18 17 16 35 35 H 1.09005 * 109.51841 * 342.87679 * 21 15 13 36 36 H 1.08993 * 109.52527 * 103.06485 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 7 6.0399 -4.0178 0.0009 13 6 7.3650 -4.2641 0.0005 14 8 8.1551 -3.3399 0.0001 15 7 7.8142 -5.5348 0.0007 16 6 9.2559 -5.8387 0.0009 17 6 9.5741 -6.6085 1.2854 18 6 8.5535 -7.6825 1.5178 19 6 7.3797 -7.7133 0.9687 20 17 6.3190 -9.0264 1.3742 21 6 6.8859 -6.6747 0.0073 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8880 26 1 3.6586 -3.1495 0.8919 27 1 5.9142 -2.1238 -0.8908 28 1 5.9156 -2.1217 0.8892 29 1 5.4096 -4.7551 0.0016 30 1 9.5041 -6.4501 -0.8667 31 1 9.8283 -4.9113 -0.0247 32 1 10.5614 -7.0621 1.1986 33 1 9.5670 -5.9194 2.1298 34 1 8.8147 -8.4864 2.1900 35 1 5.8961 -6.3365 0.3139 36 1 6.8311 -7.1056 -0.9924 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892792233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -26.282223 kcal Electronic energy + Delta-G solvation = -18306.280900 eV Core-core repulsion = 15237.431645 eV Total energy + Delta-G solvation = -3068.849255 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53412 -38.13240 -36.63899 -35.53371 -33.66507 -32.91074 -31.55877 -30.98582 -27.39255 -25.93506 -24.07419 -22.63014 -20.84114 -20.35261 -18.72097 -17.97418 -16.81736 -16.50075 -16.15666 -15.55951 -14.99388 -14.75481 -14.33610 -14.24626 -13.98707 -13.86493 -13.09081 -12.75081 -12.69390 -12.33778 -12.04713 -11.91831 -11.85989 -11.36902 -11.27448 -11.05430 -10.89311 -10.32447 -10.02515 -9.83685 -9.68855 -9.32055 -9.22638 -9.13630 -8.68930 -8.55137 -6.06025 -4.04757 1.43980 1.71577 2.54485 3.16306 3.31825 3.39386 3.43812 3.85405 4.10347 4.44860 4.55730 4.71658 4.74004 4.92873 4.99966 5.19726 5.28141 5.43263 5.52549 5.57550 5.67464 5.73565 6.01047 6.02121 6.09465 6.34918 6.45673 6.64112 6.79863 6.84802 7.23150 7.36600 7.75535 7.89554 8.50088 8.55931 8.97812 9.56237 11.07220 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.003456 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.812378 B = 8099.007967 C = 8990.467436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.131 3.869 12 N -0.740 5.740 13 C 0.711 3.289 14 O -0.587 6.587 15 N -0.633 5.633 16 C 0.125 3.875 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.090 4.090 20 Cl -0.080 7.080 21 C 0.153 3.847 22 H 0.263 0.737 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.394 0.606 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.701 -18.238 1.334 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.008 3.992 12 N -0.396 5.396 13 C 0.412 3.588 14 O -0.464 6.464 15 N -0.373 5.373 16 C 0.002 3.998 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.117 4.117 20 Cl -0.052 7.052 21 C 0.029 3.971 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.230 0.770 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.002 -17.486 1.362 25.859 hybrid contribution -0.184 0.204 0.140 0.308 sum 18.818 -17.282 1.502 25.594 Atomic orbital electron populations 1.69916 1.06322 1.26951 1.51026 1.25028 0.94748 0.99241 0.94464 0.86774 0.80416 0.83512 0.78595 1.20237 1.21382 1.18866 1.21096 0.89307 0.94512 1.51079 0.91013 1.19498 0.97252 0.91393 0.96711 1.21714 0.90606 1.01094 1.01734 1.21559 0.95795 0.79875 1.01950 1.45511 1.04729 1.10297 1.79025 1.15772 0.83197 0.82070 0.77716 1.90916 1.55071 1.42183 1.58278 1.47317 1.06879 1.03682 1.79405 1.21583 0.80277 1.01258 0.96702 1.20877 0.97672 0.96039 0.99479 1.22152 0.93862 0.99639 0.98963 1.22449 0.93564 0.93070 1.02661 1.98396 1.66736 1.47416 1.92657 1.20295 0.93598 0.85158 0.98012 0.92701 0.96267 0.96683 0.92115 0.92112 0.91800 0.91854 0.76998 0.90924 0.87867 0.88955 0.89399 0.86210 0.88550 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.13 2.19 5.67 -4.04 -0.02 2.17 16 12 N -0.74 -10.44 5.46 -65.22 -0.36 -10.80 16 13 C 0.71 10.51 8.34 -86.91 -0.72 9.79 16 14 O -0.59 -10.85 15.83 5.29 0.08 -10.77 16 15 N -0.63 -6.96 2.97 -180.11 -0.54 -7.49 16 16 C 0.12 1.09 6.50 -3.53 -0.02 1.07 16 17 C -0.10 -0.70 6.28 -28.18 -0.18 -0.88 16 18 C -0.13 -0.95 9.48 -35.99 -0.34 -1.29 16 19 C -0.09 -0.75 6.33 -36.03 -0.23 -0.98 16 20 Cl -0.08 -0.69 28.76 -51.86 -1.49 -2.18 16 21 C 0.15 1.33 6.28 -5.31 -0.03 1.30 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 24 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.39 4.60 6.11 -40.82 -0.25 4.35 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.05 7.07 -51.93 -0.37 0.68 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.69 8.14 -51.94 -0.42 0.26 16 34 H 0.12 0.77 7.95 -52.49 -0.42 0.35 16 35 H 0.10 0.81 5.95 -51.93 -0.31 0.50 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -32.96 311.81 -8.81 -41.77 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.08 Total: -0.69 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.23 Total: -4.61 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.12 Total: -45.27 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.49 Total: -2.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.96 -8.81 -41.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.490 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds