Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21590 * 120.00297 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99768 * 180.02562 * 13 12 11 16 16 C 1.47337 * 121.36906 * 180.02562 * 15 13 12 17 17 C 1.53100 * 107.88859 * 118.16434 * 16 15 13 18 18 C 1.49970 * 110.40288 * 45.48968 * 17 16 15 19 19 C 1.29623 * 124.58581 * 340.99828 * 18 17 16 20 20 Cl 1.73600 * 118.18425 * 180.88142 * 19 18 17 21 21 C 1.47000 * 121.37313 * 359.72415 * 15 13 12 22 22 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 30 30 H 1.08996 * 109.77724 * 237.76810 * 16 15 13 31 31 H 1.09005 * 109.77804 * 358.57226 * 16 15 13 32 32 H 1.09004 * 109.30875 * 165.76913 * 17 16 15 33 33 H 1.08988 * 109.31851 * 285.38543 * 17 16 15 34 34 H 1.07996 * 117.70654 * 161.02129 * 18 17 16 35 35 H 1.09005 * 109.51841 * 342.87679 * 21 15 13 36 36 H 1.08993 * 109.52527 * 103.06485 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 7 6.0399 -4.0178 0.0009 13 6 7.3650 -4.2641 0.0005 14 8 8.1551 -3.3399 0.0001 15 7 7.8142 -5.5348 0.0007 16 6 9.2559 -5.8387 0.0009 17 6 9.5741 -6.6085 1.2854 18 6 8.5535 -7.6825 1.5178 19 6 7.3797 -7.7133 0.9687 20 17 6.3190 -9.0264 1.3742 21 6 6.8859 -6.6747 0.0073 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8880 26 1 3.6586 -3.1495 0.8919 27 1 5.9142 -2.1238 -0.8908 28 1 5.9156 -2.1217 0.8892 29 1 5.4096 -4.7551 0.0016 30 1 9.5041 -6.4501 -0.8667 31 1 9.8283 -4.9113 -0.0247 32 1 10.5614 -7.0621 1.1986 33 1 9.5670 -5.9194 2.1298 34 1 8.8147 -8.4864 2.1900 35 1 5.8961 -6.3365 0.3139 36 1 6.8311 -7.1056 -0.9924 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892792233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -47.441133 kcal Electronic energy + Delta-G solvation = -18307.198419 eV Core-core repulsion = 15237.431645 eV Total energy + Delta-G solvation = -3069.766774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52639 -38.99204 -37.38841 -36.91814 -35.24772 -34.13120 -33.01367 -31.88295 -29.01040 -26.86693 -25.06892 -24.01143 -22.24230 -21.61796 -19.79541 -18.96022 -18.60248 -17.53978 -17.06476 -16.60968 -16.31450 -15.92928 -15.59879 -15.28954 -15.14729 -14.82824 -14.75400 -13.85198 -13.83217 -13.67675 -13.30629 -12.95445 -12.73400 -12.70825 -12.53623 -12.05241 -11.97138 -11.86454 -11.76726 -11.59011 -11.33178 -11.27734 -10.75058 -10.29741 -9.91240 -9.65098 -8.28382 -6.32259 0.83940 1.04438 1.38178 1.39847 1.51738 1.62784 2.04018 2.37591 2.86382 3.07525 3.46218 3.93814 4.01373 4.07558 4.15340 4.21865 4.35993 4.38047 4.50556 4.62332 4.80671 4.90473 4.91734 4.93507 5.04346 5.14205 5.33585 5.39410 5.42716 5.50923 5.56930 5.66150 5.83229 6.28506 6.75620 6.83938 7.32613 7.44477 8.88074 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.003456 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.812378 B = 8099.007967 C = 8990.467436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.146 3.854 12 N -0.734 5.734 13 C 0.707 3.293 14 O -0.628 6.628 15 N -0.628 5.628 16 C 0.118 3.882 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.102 4.102 20 Cl -0.084 7.084 21 C 0.150 3.850 22 H 0.266 0.734 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.407 0.593 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.717 -18.949 1.359 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.049 4.049 10 C -0.138 4.138 11 C 0.021 3.979 12 N -0.391 5.391 13 C 0.409 3.591 14 O -0.509 6.509 15 N -0.366 5.366 16 C -0.004 4.004 17 C -0.134 4.134 18 C -0.139 4.139 19 C -0.129 4.129 20 Cl -0.056 7.056 21 C 0.027 3.973 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.151 0.849 35 H 0.115 0.885 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.029 -18.268 1.388 27.890 hybrid contribution -0.828 0.298 0.135 0.891 sum 20.200 -17.971 1.523 27.080 Atomic orbital electron populations 1.70063 1.08242 1.28121 1.52749 1.25986 0.95585 1.03451 0.94216 0.85694 0.79530 0.78463 0.79211 1.19195 1.21088 1.17071 1.21466 0.91910 0.93250 1.50213 0.94453 1.19458 0.94034 0.94543 0.96908 1.21480 0.91960 0.98231 1.02122 1.21185 0.94053 0.81249 1.01374 1.45267 1.05091 1.09703 1.79037 1.15892 0.82788 0.82887 0.77547 1.90885 1.55996 1.43870 1.60185 1.47348 1.08265 1.02933 1.78051 1.21807 0.78705 1.01141 0.98738 1.20876 0.99052 0.95551 0.97949 1.22342 0.93468 0.99764 0.98341 1.22387 0.93898 0.93179 1.03481 1.98398 1.66962 1.47511 1.92696 1.20441 0.93077 0.84511 0.99240 0.92524 0.96044 0.96048 0.91664 0.91874 0.92316 0.92612 0.75524 0.88757 0.89506 0.85938 0.90300 0.84905 0.88504 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 44.38 27.47 68.60 1.88 46.26 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.53 -30.12 9.66 25.60 0.25 -29.87 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.10 -3.62 5.27 30.59 0.16 -3.45 16 11 C 0.15 4.69 5.67 86.38 0.49 5.18 16 12 N -0.73 -19.79 5.46 -478.52 -2.61 -22.40 16 13 C 0.71 20.19 8.34 179.05 1.49 21.68 16 14 O -0.63 -22.99 15.83 -4.00 -0.06 -23.05 16 15 N -0.63 -12.76 2.97 -842.01 -2.50 -15.26 16 16 C 0.12 1.84 6.50 86.25 0.56 2.40 16 17 C -0.10 -1.08 6.28 29.65 0.19 -0.89 16 18 C -0.12 -1.48 9.48 26.83 0.25 -1.22 16 19 C -0.10 -1.48 6.33 26.81 0.17 -1.31 16 20 Cl -0.08 -1.29 28.76 -2.72 -0.08 -1.37 16 21 C 0.15 2.30 6.28 85.29 0.54 2.84 16 22 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 23 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 24 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 25 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.41 8.85 6.11 -92.71 -0.57 8.28 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.68 7.07 -2.38 -0.02 1.67 16 32 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.13 1.31 7.95 -2.91 -0.02 1.29 16 35 H 0.10 1.46 5.95 -2.38 -0.01 1.44 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.38 311.81 2.07 -69.32 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.46 Total: 10.06 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 4.68 Total: -4.33 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -4.82 Total: -96.88 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -71.38 2.07 -69.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.877 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds