Wall clock time and date at job start Mon Mar 30 2020 00:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48508 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47238 * 299.99980 * 3 2 1 6 6 H 1.48494 * 109.47268 * 60.00569 * 3 2 1 7 7 C 1.37878 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53047 * 109.45846 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31368 * 178.62526 * 10 9 7 12 12 N 1.46931 * 108.88826 * 54.56747 * 11 10 9 13 13 C 1.34775 * 120.62344 * 126.46316 * 12 11 10 14 14 O 1.21578 * 120.00454 * 354.76255 * 13 12 11 15 15 N 1.34780 * 119.99446 * 174.77186 * 13 12 11 16 16 C 1.46496 * 119.99968 * 184.98091 * 15 13 12 17 17 C 1.50707 * 109.47260 * 179.97438 * 16 15 13 18 18 C 1.31154 * 119.99965 * 125.00111 * 17 16 15 19 19 Cl 1.73597 * 120.00267 * 359.97438 * 18 17 16 20 20 C 1.46952 * 118.71690 * 306.63710 * 12 11 10 21 21 C 1.53045 * 109.45145 * 59.94358 * 9 7 2 22 22 H 0.97008 * 119.99550 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46161 * 299.97374 * 9 7 2 24 24 H 1.09000 * 109.49209 * 58.67914 * 10 9 7 25 25 H 1.08993 * 109.52764 * 298.59743 * 10 9 7 26 26 H 1.08996 * 109.58313 * 174.42242 * 11 10 9 27 27 H 1.08994 * 109.58819 * 294.71120 * 11 10 9 28 28 H 0.97003 * 119.99848 * 4.97554 * 15 13 12 29 29 H 1.09002 * 109.47007 * 299.99501 * 16 15 13 30 30 H 1.08999 * 109.47801 * 59.99484 * 16 15 13 31 31 H 1.07998 * 119.99770 * 304.99637 * 17 16 15 32 32 H 1.07997 * 119.99903 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.46861 * 293.57854 * 20 12 11 34 34 H 1.08998 * 109.71491 * 173.28520 * 20 12 11 35 35 H 1.08996 * 109.49338 * 301.32855 * 21 9 7 36 36 H 1.08996 * 109.49491 * 61.42395 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6623 -0.0018 11 6 1.4765 -4.9867 0.0329 12 7 0.5193 -5.0102 -1.0816 13 6 0.5068 -6.0372 -1.9543 14 8 1.3525 -6.9076 -1.8811 15 7 -0.4432 -6.0992 -2.9084 16 6 -0.5237 -7.2686 -3.7871 17 6 -1.6631 -7.0905 -4.7573 18 6 -1.4456 -7.1792 -6.0476 19 17 0.1549 -7.5010 -6.6381 20 6 -0.4212 -3.8906 -1.2284 21 6 0.3696 -2.5787 -1.2493 22 1 -0.4850 0.8401 0.0004 23 1 0.6250 -2.5570 0.8900 24 1 2.8886 -3.5919 0.8755 25 1 2.8554 -3.6192 -0.9042 26 1 2.1749 -5.8175 -0.0677 27 1 0.9396 -5.0728 0.9775 28 1 -1.0738 -5.3695 -3.0130 29 1 0.4106 -7.3735 -4.3387 30 1 -0.6939 -8.1628 -3.1875 31 1 -2.6587 -6.8900 -4.3900 32 1 -2.2620 -7.0512 -6.7429 33 1 -1.1148 -3.8863 -0.3876 34 1 -0.9769 -3.9970 -2.1601 35 1 -0.3228 -1.7370 -1.2600 36 1 0.9970 -2.5458 -2.1399 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899048104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:25 Heat of formation + Delta-G solvation = -20.779391 kcal Electronic energy + Delta-G solvation = -18879.840714 eV Core-core repulsion = 15811.230080 eV Total energy + Delta-G solvation = -3068.610634 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93572 -37.40639 -36.81513 -35.29723 -33.54566 -32.58810 -30.94616 -29.99394 -26.76380 -25.49013 -22.90429 -22.24340 -20.59257 -20.15313 -18.80218 -17.69557 -16.69679 -16.24547 -15.76818 -15.03684 -14.62229 -14.51470 -14.11252 -13.55457 -13.16368 -13.04985 -12.75362 -12.62216 -12.46009 -12.08570 -12.00602 -11.56902 -11.31574 -10.96709 -10.83966 -10.60337 -10.36968 -10.17298 -9.81503 -9.59244 -9.45562 -9.14671 -8.95369 -8.85782 -8.38223 -7.88153 -6.03950 -4.09592 1.43849 2.04948 3.12684 3.26880 3.35440 3.39979 3.57348 4.28500 4.40268 4.40863 4.92922 5.25520 5.36982 5.47555 5.55660 5.79029 5.83583 5.95155 5.99102 6.08542 6.19513 6.28139 6.48709 6.64071 6.69457 6.87431 7.00820 7.15440 7.22813 7.45981 7.67130 7.92460 8.03084 8.31832 8.40611 8.94098 8.95512 9.55605 11.01559 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.003967 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.470285 B = 7055.705098 C = 7519.228252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.129 3.871 12 N -0.618 5.618 13 C 0.706 3.294 14 O -0.603 6.603 15 N -0.748 5.748 16 C 0.155 3.845 17 C -0.159 4.159 18 C -0.091 4.091 19 Cl -0.085 7.085 20 C 0.111 3.889 21 C -0.124 4.124 22 H 0.259 0.741 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.397 0.603 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 -12.054 -9.171 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.163 4.163 11 C 0.007 3.993 12 N -0.354 5.354 13 C 0.408 3.592 14 O -0.483 6.483 15 N -0.407 5.407 16 C 0.031 3.969 17 C -0.178 4.178 18 C -0.136 4.136 19 Cl -0.057 7.057 20 C -0.012 4.012 21 C -0.162 4.162 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.234 0.766 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.958 -12.599 -9.138 16.666 hybrid contribution 0.010 1.401 -0.182 1.413 sum -5.948 -11.198 -9.320 15.736 Atomic orbital electron populations 1.69849 1.05845 1.26296 1.51213 1.24957 0.94871 0.99050 0.95107 0.86565 0.80239 0.83845 0.77532 1.19817 1.21094 1.21055 1.21268 0.93033 0.90590 1.49928 0.92628 1.18629 0.92666 0.91789 0.93884 1.22023 0.98906 0.94353 1.00983 1.21567 0.91170 0.99633 0.86962 1.47416 1.38229 1.20741 1.29064 1.15816 0.81558 0.82480 0.79369 1.90854 1.40169 1.41612 1.75680 1.45174 1.36121 1.22886 1.36528 1.20319 0.97135 0.88726 0.90749 1.23301 1.00694 0.99981 0.93853 1.24600 0.88754 1.03577 0.96718 1.98386 1.25128 1.93611 1.88609 1.21890 0.91710 0.87936 0.99652 1.22018 1.00051 0.94463 0.99700 0.93087 0.95435 0.92142 0.92949 0.90273 0.92464 0.76614 0.89934 0.90623 0.84129 0.83022 0.92040 0.92574 0.87831 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 11.30 55.43 0.63 -23.64 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.16 2.07 -91.72 -0.19 0.97 16 10 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 11 C 0.13 2.42 6.44 -3.71 -0.02 2.40 16 12 N -0.62 -11.35 2.98 -178.47 -0.53 -11.88 16 13 C 0.71 12.93 8.29 -86.92 -0.72 12.21 16 14 O -0.60 -12.91 15.77 5.30 0.08 -12.83 16 15 N -0.75 -10.58 5.46 -66.41 -0.36 -10.94 16 16 C 0.15 1.87 5.97 -5.19 -0.03 1.84 16 17 C -0.16 -1.33 9.64 -36.06 -0.35 -1.67 16 18 C -0.09 -0.72 10.82 28.97 0.31 -0.41 16 19 Cl -0.09 -0.88 26.97 -51.86 -1.40 -2.28 16 20 C 0.11 1.95 6.38 -3.69 -0.02 1.92 16 21 C -0.12 -2.71 5.15 -26.61 -0.14 -2.84 16 22 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.40 4.85 5.96 -40.82 -0.24 4.61 16 29 H 0.08 1.13 6.01 -51.93 -0.31 0.82 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.82 5.66 -51.93 -0.29 0.53 16 35 H 0.10 2.51 6.03 -51.93 -0.31 2.19 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -30.19 307.07 -8.54 -38.73 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.87 Total: 3.09 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.69 Total: -0.67 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.27 Total: -46.46 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.40 Total: -2.28 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.19 -8.54 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899048104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.949 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds