Wall clock time and date at job start Mon Mar 30 2020 00:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48508 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47238 * 299.99980 * 3 2 1 6 6 H 1.48494 * 109.47268 * 60.00569 * 3 2 1 7 7 C 1.37878 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53047 * 109.45846 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31368 * 178.62526 * 10 9 7 12 12 N 1.46931 * 108.88826 * 54.56747 * 11 10 9 13 13 C 1.34775 * 120.62344 * 126.46316 * 12 11 10 14 14 O 1.21578 * 120.00454 * 354.76255 * 13 12 11 15 15 N 1.34780 * 119.99446 * 174.77186 * 13 12 11 16 16 C 1.46496 * 119.99968 * 184.98091 * 15 13 12 17 17 C 1.50707 * 109.47260 * 179.97438 * 16 15 13 18 18 C 1.31154 * 119.99965 * 125.00111 * 17 16 15 19 19 Cl 1.73597 * 120.00267 * 359.97438 * 18 17 16 20 20 C 1.46952 * 118.71690 * 306.63710 * 12 11 10 21 21 C 1.53045 * 109.45145 * 59.94358 * 9 7 2 22 22 H 0.97008 * 119.99550 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46161 * 299.97374 * 9 7 2 24 24 H 1.09000 * 109.49209 * 58.67914 * 10 9 7 25 25 H 1.08993 * 109.52764 * 298.59743 * 10 9 7 26 26 H 1.08996 * 109.58313 * 174.42242 * 11 10 9 27 27 H 1.08994 * 109.58819 * 294.71120 * 11 10 9 28 28 H 0.97003 * 119.99848 * 4.97554 * 15 13 12 29 29 H 1.09002 * 109.47007 * 299.99501 * 16 15 13 30 30 H 1.08999 * 109.47801 * 59.99484 * 16 15 13 31 31 H 1.07998 * 119.99770 * 304.99637 * 17 16 15 32 32 H 1.07997 * 119.99903 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.46861 * 293.57854 * 20 12 11 34 34 H 1.08998 * 109.71491 * 173.28520 * 20 12 11 35 35 H 1.08996 * 109.49338 * 301.32855 * 21 9 7 36 36 H 1.08996 * 109.49491 * 61.42395 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6623 -0.0018 11 6 1.4765 -4.9867 0.0329 12 7 0.5193 -5.0102 -1.0816 13 6 0.5068 -6.0372 -1.9543 14 8 1.3525 -6.9076 -1.8811 15 7 -0.4432 -6.0992 -2.9084 16 6 -0.5237 -7.2686 -3.7871 17 6 -1.6631 -7.0905 -4.7573 18 6 -1.4456 -7.1792 -6.0476 19 17 0.1549 -7.5010 -6.6381 20 6 -0.4212 -3.8906 -1.2284 21 6 0.3696 -2.5787 -1.2493 22 1 -0.4850 0.8401 0.0004 23 1 0.6250 -2.5570 0.8900 24 1 2.8886 -3.5919 0.8755 25 1 2.8554 -3.6192 -0.9042 26 1 2.1749 -5.8175 -0.0677 27 1 0.9396 -5.0728 0.9775 28 1 -1.0738 -5.3695 -3.0130 29 1 0.4106 -7.3735 -4.3387 30 1 -0.6939 -8.1628 -3.1875 31 1 -2.6587 -6.8900 -4.3900 32 1 -2.2620 -7.0512 -6.7429 33 1 -1.1148 -3.8863 -0.3876 34 1 -0.9769 -3.9970 -2.1601 35 1 -0.3228 -1.7370 -1.2600 36 1 0.9970 -2.5458 -2.1399 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899048104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:24 Heat of formation + Delta-G solvation = -39.022890 kcal Electronic energy + Delta-G solvation = -18880.631812 eV Core-core repulsion = 15811.230080 eV Total energy + Delta-G solvation = -3069.401732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.36494 -38.68561 -37.87275 -36.37285 -35.33158 -33.76663 -32.57161 -31.59504 -28.27531 -26.85680 -24.58778 -23.85168 -21.77253 -21.36560 -20.23520 -19.10837 -18.26623 -17.65619 -17.02968 -16.55211 -16.21226 -15.66458 -15.34832 -14.94342 -14.85032 -14.53213 -14.21942 -14.16482 -13.61973 -13.19789 -13.15289 -13.10924 -12.81250 -12.75713 -12.42237 -12.14387 -11.98013 -11.61107 -11.48975 -11.26926 -10.98026 -10.76978 -10.38964 -10.34815 -10.03341 -9.36838 -8.07150 -6.19746 0.76102 1.40567 1.40593 1.44182 1.54018 1.84709 2.13851 2.45125 3.00939 3.19507 3.70630 4.11889 4.22687 4.25220 4.36193 4.48501 4.54227 4.60129 4.70541 4.74229 4.89801 5.00634 5.09642 5.21693 5.23863 5.26338 5.44452 5.50890 5.52067 5.67110 6.00262 6.06646 6.14703 6.41364 6.89356 6.97900 7.47825 7.55697 8.96330 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.003967 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.470285 B = 7055.705098 C = 7519.228252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.135 3.865 12 N -0.622 5.622 13 C 0.702 3.298 14 O -0.637 6.637 15 N -0.733 5.733 16 C 0.150 3.850 17 C -0.159 4.159 18 C -0.083 4.083 19 Cl -0.113 7.113 20 C 0.122 3.878 21 C -0.115 4.115 22 H 0.262 0.738 23 H 0.007 0.993 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.408 0.592 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.187 0.813 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -12.223 -9.959 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.153 4.153 11 C 0.012 3.988 12 N -0.358 5.358 13 C 0.403 3.597 14 O -0.520 6.520 15 N -0.391 5.391 16 C 0.027 3.973 17 C -0.178 4.178 18 C -0.128 4.128 19 Cl -0.085 7.085 20 C -0.001 4.001 21 C -0.153 4.153 22 H 0.071 0.929 23 H 0.025 0.975 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.247 0.753 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.190 0.810 32 H 0.204 0.796 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.449 -12.766 -9.947 17.815 hybrid contribution 0.461 1.452 0.057 1.525 sum -6.988 -11.314 -9.889 16.572 Atomic orbital electron populations 1.69943 1.06692 1.27035 1.51329 1.25595 0.95706 1.01789 0.94846 0.85674 0.78976 0.80349 0.77639 1.19889 1.20608 1.20566 1.21584 0.92869 0.92377 1.50472 0.93688 1.18604 0.93051 0.91795 0.93823 1.21874 0.98354 0.94617 1.00435 1.21457 0.91378 0.98003 0.87980 1.47411 1.38252 1.21038 1.29076 1.16001 0.81915 0.81957 0.79815 1.90830 1.41728 1.42813 1.76626 1.45107 1.34930 1.23762 1.35328 1.20413 0.98085 0.87879 0.90943 1.23316 1.00611 1.00808 0.93021 1.25097 0.88048 1.02394 0.97255 1.98391 1.27480 1.93756 1.88886 1.21775 0.91013 0.85385 1.01908 1.21786 0.99378 0.96237 0.97948 0.92909 0.97486 0.91732 0.94423 0.90371 0.90999 0.75294 0.91795 0.90855 0.80987 0.79618 0.91196 0.89125 0.90026 0.95786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.54 11.30 21.45 0.24 -49.30 16 2 C 0.02 1.05 5.30 84.65 0.45 1.50 16 3 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -28.89 8.56 25.60 0.22 -28.67 16 8 H 0.04 2.46 7.74 -2.91 -0.02 2.43 16 9 C 0.05 2.20 2.07 -11.51 -0.02 2.17 16 10 C -0.11 -4.78 5.30 30.68 0.16 -4.62 16 11 C 0.13 4.96 6.44 86.36 0.56 5.52 16 12 N -0.62 -22.04 2.98 -836.83 -2.49 -24.54 16 13 C 0.70 24.81 8.29 179.05 1.49 26.29 16 14 O -0.64 -27.01 15.77 -3.96 -0.06 -27.07 16 15 N -0.73 -19.18 5.46 -482.30 -2.63 -21.81 16 16 C 0.15 3.36 5.97 85.64 0.51 3.88 16 17 C -0.16 -2.14 9.64 25.50 0.25 -1.90 16 18 C -0.08 -1.07 10.82 67.63 0.73 -0.34 16 19 Cl -0.11 -2.20 26.97 -2.72 -0.07 -2.27 16 20 C 0.12 4.07 6.38 86.36 0.55 4.62 16 21 C -0.11 -5.00 5.15 30.68 0.16 -4.84 16 22 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 23 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 26 H 0.08 2.91 6.99 -2.39 -0.02 2.90 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.41 8.70 5.96 -92.71 -0.55 8.15 16 29 H 0.06 1.71 6.01 -2.39 -0.01 1.69 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.09 2.39 5.66 -2.39 -0.01 2.38 16 35 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 36 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -65.55 307.07 2.59 -62.96 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.53 Total: 13.70 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.05 Total: 3.60 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -4.88 Total: -95.64 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.06 Total: -27.07 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.07 Total: -2.27 kcal Total: -65.55 2.59 -62.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899048104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.938 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds