Wall clock time and date at job start Mon Mar 30 2020 00:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86801 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47473 * 269.99995 * 3 2 1 5 5 H 1.48503 * 109.46810 * 29.99965 * 3 2 1 6 6 H 1.48501 * 109.47257 * 149.99387 * 3 2 1 7 7 C 1.39199 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00305 * 200.29686 * 7 2 1 9 9 N 1.36643 * 119.99787 * 20.29754 * 7 2 1 10 10 C 1.34772 * 119.99849 * 44.06166 * 9 7 2 11 11 O 1.21594 * 120.00059 * 355.03222 * 10 9 7 12 12 C 1.47895 * 120.00094 * 175.04058 * 10 9 7 13 13 C 1.41373 * 119.97265 * 172.85398 * 12 10 9 14 14 C 1.35302 * 119.31179 * 179.77685 * 13 12 10 15 15 N 1.36688 * 119.19597 * 0.46850 * 14 13 12 16 16 N 1.39969 * 132.46172 * 179.77332 * 15 14 13 17 17 C 1.31523 * 108.89351 * 180.02562 * 16 15 14 18 18 C 1.38459 * 109.08792 * 0.02562 * 17 16 15 19 19 C 1.37433 * 119.96649 * 359.77979 * 15 14 13 20 20 N 1.32155 * 119.96875 * 353.12428 * 12 10 9 21 21 C 1.46500 * 120.00042 * 224.33584 * 9 7 2 22 22 C 1.53006 * 117.49838 * 2.30599 * 21 9 7 23 23 C 1.52998 * 59.99845 * 252.50935 * 22 21 9 24 24 H 0.97007 * 119.99341 * 4.96870 * 1 2 3 25 25 H 1.07995 * 120.34385 * 359.97438 * 13 12 10 26 26 H 1.07999 * 120.40151 * 180.22799 * 14 13 12 27 27 H 1.08002 * 125.45501 * 179.97438 * 17 16 15 28 28 H 1.08001 * 126.18158 * 180.02562 * 18 17 16 29 29 H 1.09002 * 115.55155 * 148.01574 * 21 9 7 30 30 H 1.09000 * 117.49396 * 0.02562 * 22 21 9 31 31 H 1.08997 * 117.49685 * 145.02062 * 22 21 9 32 32 H 1.08999 * 117.49930 * 252.51010 * 23 22 21 33 33 H 1.09003 * 117.51381 * 107.48467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0464 -1.4000 5 1 1.4442 2.6526 0.7001 6 1 3.5442 1.4401 0.7002 7 6 2.0086 -1.2055 0.0005 8 1 3.0383 -1.2345 0.3250 9 7 1.3889 -2.3523 -0.4095 10 6 0.6234 -2.3450 -1.5187 11 8 0.4105 -1.3005 -2.1036 12 6 0.0422 -3.6074 -2.0243 13 6 -0.8805 -3.5811 -3.0951 14 6 -1.4005 -4.7444 -3.5501 15 7 -1.0285 -5.9183 -2.9569 16 7 -1.3861 -7.2509 -3.1924 17 6 -0.7453 -8.0207 -2.3400 18 6 0.0463 -7.2312 -1.5233 19 6 -0.1329 -5.9070 -1.9145 20 7 0.3818 -4.7587 -1.4713 21 6 1.5518 -3.5882 0.3600 22 6 2.3838 -3.5177 1.6422 23 6 2.9467 -4.2154 0.4023 24 1 -0.4849 0.8370 -0.0728 25 1 -1.1649 -2.6425 -3.5473 26 1 -2.1040 -4.7450 -4.3695 27 1 -0.8246 -9.0965 -2.2853 28 1 0.6881 -7.5796 -0.7276 29 1 0.6964 -4.2637 0.3513 30 1 2.8095 -2.5516 1.9133 31 1 2.0757 -4.1468 2.4773 32 1 3.0090 -5.3035 0.4218 33 1 3.7432 -3.7086 -0.1426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900360017.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:13 Heat of formation + Delta-G solvation = 146.662405 kcal Electronic energy + Delta-G solvation = -20715.272716 eV Core-core repulsion = 17552.815409 eV Total energy + Delta-G solvation = -3162.457307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90935 -39.01471 -37.21583 -36.01164 -33.74401 -33.04405 -31.15107 -30.57367 -28.80692 -25.91341 -24.50787 -23.09677 -21.65954 -21.29063 -21.19537 -19.79227 -18.11763 -17.26074 -16.52543 -16.11734 -15.69729 -15.02273 -14.65677 -14.29747 -13.89568 -13.72566 -13.69156 -13.26056 -13.01618 -12.62609 -11.97971 -11.95323 -11.34922 -11.06532 -10.99701 -10.93136 -10.88253 -10.72206 -10.32061 -10.01872 -9.85945 -9.16061 -9.14371 -8.91066 -8.25445 -7.64807 -7.26754 -6.34238 -4.07240 0.64595 1.17788 2.33883 2.82143 3.21969 3.29184 3.31253 3.45091 3.98368 4.18280 4.35626 4.43085 4.51092 4.85018 4.94041 5.13409 5.25184 5.41250 5.64001 5.66539 5.80343 5.86480 5.90852 6.01896 6.13924 6.30462 6.35423 6.55245 6.61805 6.78740 6.91675 7.01998 7.38122 7.66121 7.92167 8.04581 8.75146 8.89378 9.35582 10.00328 10.68134 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027453 B = 0.006256 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.678699 B = 4474.688014 C = 5303.527618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.329 4.329 8 H 0.091 0.909 9 N -0.380 5.380 10 C 0.495 3.505 11 O -0.528 6.528 12 C 0.192 3.808 13 C -0.171 4.171 14 C 0.139 3.861 15 N -0.315 5.315 16 N -0.332 5.332 17 C 0.082 3.918 18 C -0.281 4.281 19 C 0.267 3.733 20 N -0.448 5.448 21 C 0.086 3.914 22 C -0.186 4.186 23 C -0.191 4.191 24 H 0.271 0.729 25 H 0.173 0.827 26 H 0.176 0.824 27 H 0.191 0.809 28 H 0.157 0.843 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -9.830 -2.036 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.108 0.892 9 N -0.097 5.097 10 C 0.283 3.717 11 O -0.407 6.407 12 C 0.028 3.972 13 C -0.195 4.195 14 C 0.006 3.994 15 N -0.087 5.087 16 N -0.158 5.158 17 C -0.095 4.095 18 C -0.313 4.313 19 C 0.038 3.962 20 N -0.165 5.165 21 C -0.020 4.020 22 C -0.224 4.224 23 C -0.229 4.229 24 H 0.082 0.918 25 H 0.191 0.809 26 H 0.193 0.807 27 H 0.208 0.792 28 H 0.175 0.825 29 H 0.148 0.852 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.134 -9.473 -2.551 9.876 hybrid contribution 0.274 0.651 0.006 0.706 sum -0.860 -8.822 -2.545 9.222 Atomic orbital electron populations 1.69839 1.06916 1.28708 1.38122 1.25337 0.94826 0.99825 0.94396 0.86154 0.79498 0.81655 0.78658 1.19952 1.21004 1.19462 1.19216 0.95607 0.84477 1.46460 0.89170 1.42735 1.41432 1.07314 1.18252 1.17146 0.86202 0.85377 0.82938 1.90662 1.61293 1.30155 1.58555 1.22679 0.90362 0.93324 0.90794 1.21764 0.99626 0.98541 0.99619 1.21836 0.98678 0.81265 0.97640 1.47263 1.30555 1.06490 1.24441 1.77785 1.27614 0.83528 1.26854 1.23641 0.93468 1.00100 0.92245 1.20875 1.12704 0.87998 1.09710 1.21127 0.91077 0.95353 0.88690 1.68817 1.24892 0.95877 1.26906 1.22264 0.94760 0.89705 0.95245 1.23205 1.05275 1.02463 0.91475 1.23125 0.98913 0.98740 1.02155 0.91822 0.80919 0.80669 0.79241 0.82541 0.85215 0.87831 0.89749 0.89663 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.48 11.70 55.51 0.65 -21.83 16 2 C 0.07 1.85 4.31 -17.44 -0.08 1.78 16 3 Si 0.91 20.51 29.60 -169.99 -5.03 15.48 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.33 -8.57 7.96 -15.05 -0.12 -8.69 16 8 H 0.09 2.24 7.23 -52.49 -0.38 1.87 16 9 N -0.38 -9.44 2.82 -108.79 -0.31 -9.74 16 10 C 0.50 12.43 7.06 -12.31 -0.09 12.34 16 11 O -0.53 -14.68 13.94 5.28 0.07 -14.61 16 12 C 0.19 4.01 6.66 -82.58 -0.55 3.46 16 13 C -0.17 -2.95 9.58 -39.44 -0.38 -3.33 16 14 C 0.14 2.08 11.30 -16.43 -0.19 1.89 16 15 N -0.32 -5.35 3.91 -12.18 -0.05 -5.40 16 16 N -0.33 -5.29 12.66 30.45 0.39 -4.91 16 17 C 0.08 1.10 11.93 -17.60 -0.21 0.89 16 18 C -0.28 -4.24 10.92 -39.13 -0.43 -4.67 16 19 C 0.27 4.81 7.92 -155.62 -1.23 3.58 16 20 N -0.45 -8.82 6.35 -8.81 -0.06 -8.87 16 21 C 0.09 1.80 4.86 -67.93 -0.33 1.47 16 22 C -0.19 -3.44 9.80 -26.73 -0.26 -3.71 16 23 C -0.19 -3.44 10.37 -26.73 -0.28 -3.72 16 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.17 2.78 7.71 -52.49 -0.40 2.38 16 26 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.13 2.73 5.82 -51.93 -0.30 2.43 16 30 H 0.10 2.04 6.70 -51.93 -0.35 1.69 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -31.56 289.35 -7.21 -38.77 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.11 Total: 5.45 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -4.14 Total: 1.30 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.62 Total: -50.75 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.07 Total: -14.61 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.56 -7.21 -38.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360017.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.434 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds