Wall clock time and date at job start Mon Mar 30 2020 00:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86801 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47473 * 269.99995 * 3 2 1 5 5 H 1.48503 * 109.46810 * 29.99965 * 3 2 1 6 6 H 1.48501 * 109.47257 * 149.99387 * 3 2 1 7 7 C 1.39199 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00305 * 200.29686 * 7 2 1 9 9 N 1.36643 * 119.99787 * 20.29754 * 7 2 1 10 10 C 1.34772 * 119.99849 * 44.06166 * 9 7 2 11 11 O 1.21594 * 120.00059 * 355.03222 * 10 9 7 12 12 C 1.47895 * 120.00094 * 175.04058 * 10 9 7 13 13 C 1.41373 * 119.97265 * 172.85398 * 12 10 9 14 14 C 1.35302 * 119.31179 * 179.77685 * 13 12 10 15 15 N 1.36688 * 119.19597 * 0.46850 * 14 13 12 16 16 N 1.39969 * 132.46172 * 179.77332 * 15 14 13 17 17 C 1.31523 * 108.89351 * 180.02562 * 16 15 14 18 18 C 1.38459 * 109.08792 * 0.02562 * 17 16 15 19 19 C 1.37433 * 119.96649 * 359.77979 * 15 14 13 20 20 N 1.32155 * 119.96875 * 353.12428 * 12 10 9 21 21 C 1.46500 * 120.00042 * 224.33584 * 9 7 2 22 22 C 1.53006 * 117.49838 * 2.30599 * 21 9 7 23 23 C 1.52998 * 59.99845 * 252.50935 * 22 21 9 24 24 H 0.97007 * 119.99341 * 4.96870 * 1 2 3 25 25 H 1.07995 * 120.34385 * 359.97438 * 13 12 10 26 26 H 1.07999 * 120.40151 * 180.22799 * 14 13 12 27 27 H 1.08002 * 125.45501 * 179.97438 * 17 16 15 28 28 H 1.08001 * 126.18158 * 180.02562 * 18 17 16 29 29 H 1.09002 * 115.55155 * 148.01574 * 21 9 7 30 30 H 1.09000 * 117.49396 * 0.02562 * 22 21 9 31 31 H 1.08997 * 117.49685 * 145.02062 * 22 21 9 32 32 H 1.08999 * 117.49930 * 252.51010 * 23 22 21 33 33 H 1.09003 * 117.51381 * 107.48467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0464 -1.4000 5 1 1.4442 2.6526 0.7001 6 1 3.5442 1.4401 0.7002 7 6 2.0086 -1.2055 0.0005 8 1 3.0383 -1.2345 0.3250 9 7 1.3889 -2.3523 -0.4095 10 6 0.6234 -2.3450 -1.5187 11 8 0.4105 -1.3005 -2.1036 12 6 0.0422 -3.6074 -2.0243 13 6 -0.8805 -3.5811 -3.0951 14 6 -1.4005 -4.7444 -3.5501 15 7 -1.0285 -5.9183 -2.9569 16 7 -1.3861 -7.2509 -3.1924 17 6 -0.7453 -8.0207 -2.3400 18 6 0.0463 -7.2312 -1.5233 19 6 -0.1329 -5.9070 -1.9145 20 7 0.3818 -4.7587 -1.4713 21 6 1.5518 -3.5882 0.3600 22 6 2.3838 -3.5177 1.6422 23 6 2.9467 -4.2154 0.4023 24 1 -0.4849 0.8370 -0.0728 25 1 -1.1649 -2.6425 -3.5473 26 1 -2.1040 -4.7450 -4.3695 27 1 -0.8246 -9.0965 -2.2853 28 1 0.6881 -7.5796 -0.7276 29 1 0.6964 -4.2637 0.3513 30 1 2.8095 -2.5516 1.9133 31 1 2.0757 -4.1468 2.4773 32 1 3.0090 -5.3035 0.4218 33 1 3.7432 -3.7086 -0.1426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900360017.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:13 Heat of formation + Delta-G solvation = 127.549361 kcal Electronic energy + Delta-G solvation = -20716.101520 eV Core-core repulsion = 17552.815409 eV Total energy + Delta-G solvation = -3163.286111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.21071 -40.69873 -38.63870 -37.74552 -35.09222 -34.88437 -32.95528 -31.93980 -30.11744 -27.65732 -26.03443 -24.47177 -23.17186 -22.80360 -22.55849 -21.45243 -19.61752 -18.76002 -18.02278 -17.68879 -17.04608 -16.81792 -16.27024 -15.79804 -15.49461 -15.30209 -14.99171 -14.77328 -14.30458 -14.12331 -13.71186 -13.51469 -13.06098 -12.78032 -12.75053 -12.30105 -12.23428 -12.22388 -12.03128 -11.66780 -11.34554 -10.92236 -10.67093 -10.47429 -10.01998 -9.13389 -8.89452 -8.26570 -6.08089 -0.75798 -0.11469 1.10255 1.40658 1.47858 1.53614 1.66406 1.95996 2.26361 2.58874 2.76861 2.98313 3.09123 3.22997 3.43950 3.57152 3.86576 4.12174 4.27299 4.36948 4.43371 4.44995 4.57355 4.61782 4.85046 4.91724 5.00567 5.10340 5.32954 5.40458 5.41906 5.49485 5.63701 6.09750 6.44394 6.51423 6.86658 7.03476 7.49494 8.13433 8.76246 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027453 B = 0.006256 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.678699 B = 4474.688014 C = 5303.527618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.026 3.974 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.355 4.355 8 H 0.091 0.909 9 N -0.399 5.399 10 C 0.488 3.512 11 O -0.568 6.568 12 C 0.172 3.828 13 C -0.190 4.190 14 C 0.167 3.833 15 N -0.325 5.325 16 N -0.339 5.339 17 C 0.097 3.903 18 C -0.268 4.268 19 C 0.227 3.773 20 N -0.447 5.447 21 C 0.058 3.942 22 C -0.177 4.177 23 C -0.167 4.167 24 H 0.266 0.734 25 H 0.177 0.823 26 H 0.222 0.778 27 H 0.241 0.759 28 H 0.180 0.820 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -13.187 -2.379 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.483 4.483 8 H 0.109 0.891 9 N -0.116 5.116 10 C 0.277 3.723 11 O -0.449 6.449 12 C 0.007 3.993 13 C -0.214 4.214 14 C 0.033 3.967 15 N -0.097 5.097 16 N -0.164 5.164 17 C -0.079 4.079 18 C -0.299 4.299 19 C -0.001 4.001 20 N -0.164 5.164 21 C -0.046 4.046 22 C -0.214 4.214 23 C -0.205 4.205 24 H 0.076 0.924 25 H 0.194 0.806 26 H 0.239 0.761 27 H 0.257 0.743 28 H 0.197 0.803 29 H 0.146 0.854 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.140 -12.858 -2.846 13.218 hybrid contribution 0.208 1.249 0.001 1.266 sum -0.931 -11.609 -2.845 11.988 Atomic orbital electron populations 1.69937 1.08330 1.28860 1.41398 1.26149 0.95431 1.02824 0.93906 0.85261 0.79092 0.78025 0.77915 1.21196 1.20522 1.17560 1.19369 0.95883 0.85551 1.47476 0.89118 1.42883 1.41708 1.08187 1.18799 1.17793 0.85465 0.86429 0.82654 1.90601 1.62425 1.32157 1.59726 1.22211 0.92337 0.92224 0.92487 1.21709 1.00219 0.99930 0.99580 1.22404 0.97240 0.79908 0.97116 1.47553 1.30458 1.07353 1.24356 1.77815 1.27919 0.83103 1.27555 1.24490 0.91260 1.02034 0.90143 1.21400 1.12041 0.86854 1.09620 1.21519 0.92668 0.95697 0.90261 1.68630 1.24785 0.96125 1.26843 1.22338 0.96211 0.89017 0.97051 1.23249 1.03997 1.02317 0.91883 1.23107 0.96390 1.00063 1.00975 0.92419 0.80601 0.76105 0.74263 0.80287 0.85410 0.89498 0.86837 0.86761 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.29 11.70 21.70 0.25 -50.03 16 2 C 0.03 1.42 4.31 85.01 0.37 1.79 16 3 Si 0.97 43.87 29.60 68.60 2.03 45.90 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.36 -19.29 7.96 84.17 0.67 -18.62 16 8 H 0.09 4.71 7.23 -2.91 -0.02 4.69 16 9 N -0.40 -20.59 2.82 -616.36 -1.74 -22.33 16 10 C 0.49 25.66 7.06 86.80 0.61 26.27 16 11 O -0.57 -33.42 13.94 -4.01 -0.06 -33.48 16 12 C 0.17 7.33 6.66 42.43 0.28 7.62 16 13 C -0.19 -6.54 9.58 22.36 0.21 -6.33 16 14 C 0.17 4.62 11.30 83.26 0.94 5.56 16 15 N -0.33 -10.09 3.91 -192.44 -0.75 -10.84 16 16 N -0.34 -9.33 12.66 -57.58 -0.73 -10.06 16 17 C 0.10 2.10 11.93 84.79 1.01 3.11 16 18 C -0.27 -6.98 10.92 22.56 0.25 -6.73 16 19 C 0.23 7.65 7.92 133.31 1.06 8.70 16 20 N -0.45 -17.38 6.35 -181.78 -1.15 -18.54 16 21 C 0.06 2.48 4.86 44.99 0.22 2.70 16 22 C -0.18 -6.43 9.80 30.60 0.30 -6.13 16 23 C -0.17 -5.84 10.37 30.59 0.32 -5.53 16 24 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 25 H 0.18 5.83 7.71 -2.91 -0.02 5.81 16 26 H 0.22 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.24 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.13 5.40 5.82 -2.39 -0.01 5.39 16 30 H 0.09 3.46 6.70 -2.39 -0.02 3.45 16 31 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -72.80 289.35 5.24 -67.56 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.15 Total: 19.40 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.24 Total: 12.41 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -4.12 Total: -111.80 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.06 Total: -33.48 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.80 5.24 -67.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360017.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.109 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds