Wall clock time and date at job start Mon Mar 30 2020 01:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 Cl 1.73603 * 120.00128 * 2 1 4 4 C 1.33342 * 119.99761 * 180.02562 * 2 1 3 5 5 C 1.46832 * 120.00389 * 359.97438 * 4 2 1 6 6 O 1.21647 * 119.99745 * 5.54055 * 5 4 2 7 7 N 1.34777 * 120.00403 * 185.54127 * 5 4 2 8 8 C 1.47076 * 120.87906 * 174.99910 * 7 5 4 9 9 C 1.53245 * 108.52039 * 231.16088 * 8 7 5 10 10 N 1.46893 * 109.33917 * 306.17204 * 9 8 7 11 11 C 1.46896 * 111.00309 * 187.25115 * 10 9 8 12 12 C 1.50701 * 109.47227 * 65.69630 * 11 10 9 13 13 H 1.08005 * 119.99615 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00637 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99715 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00238 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47090 * 90.00191 * 16 14 12 18 18 H 1.48506 * 109.47055 * 209.99937 * 16 14 12 19 19 H 1.48497 * 109.47375 * 329.99894 * 16 14 12 20 20 C 1.46904 * 111.27232 * 63.10457 * 10 9 8 21 21 C 1.47076 * 120.87877 * 354.97547 * 7 5 4 22 22 H 1.08998 * 109.47530 * 240.00145 * 1 2 3 23 23 H 1.09001 * 109.47006 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47313 * 119.99685 * 1 2 3 25 25 H 1.08005 * 120.00110 * 179.97438 * 4 2 1 26 26 H 1.09001 * 109.63126 * 350.86910 * 8 7 5 27 27 H 1.09000 * 109.62818 * 111.45368 * 8 7 5 28 28 H 1.08998 * 109.49017 * 66.13275 * 9 8 7 29 29 H 1.09001 * 109.49293 * 186.21111 * 9 8 7 30 30 H 1.08995 * 109.47607 * 185.70105 * 11 10 9 31 31 H 1.09004 * 109.47300 * 305.70493 * 11 10 9 32 32 H 0.96998 * 119.99832 * 179.97438 * 15 14 12 33 33 H 1.08992 * 109.49561 * 176.93210 * 20 10 9 34 34 H 1.09003 * 109.49053 * 56.85052 * 20 10 9 35 35 H 1.08995 * 109.62816 * 248.54623 * 21 7 5 36 36 H 1.08993 * 109.63061 * 9.13266 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5034 0.0000 4 6 2.1736 -1.1548 -0.0005 5 6 1.4395 -2.4264 -0.0005 6 8 0.2273 -2.4288 -0.1018 7 7 2.1087 -3.5910 0.1117 8 6 1.3878 -4.8680 0.2236 9 6 1.9348 -5.6313 1.4346 10 7 3.3941 -5.7501 1.3160 11 6 3.9385 -6.6215 2.3659 12 6 3.4390 -8.0283 2.1601 13 1 2.7831 -8.2527 1.3319 14 6 3.8192 -9.0290 3.0290 15 7 4.6175 -8.7557 4.0378 16 14 3.2006 -10.7729 2.7734 17 1 4.1484 -11.5114 1.9009 18 1 3.0987 -11.4594 4.0863 19 1 1.8628 -10.7343 2.1300 20 6 4.0399 -4.4308 1.3398 21 6 3.5791 -3.6183 0.1249 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 3.2537 -1.1549 -0.0009 26 1 0.3235 -4.6769 0.3615 27 1 1.5428 -5.4565 -0.6807 28 1 1.6869 -5.0903 2.3478 29 1 1.4905 -6.6261 1.4686 30 1 5.0273 -6.6118 2.3178 31 1 3.6146 -6.2602 3.3420 32 1 4.8847 -9.4596 4.6494 33 1 5.1222 -4.5549 1.3051 34 1 3.7627 -3.9066 2.2543 35 1 3.9448 -4.0867 -0.7888 36 1 3.9636 -2.6011 0.1976 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913761790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:50 Heat of formation + Delta-G solvation = -13.557317 kcal Electronic energy + Delta-G solvation = -18818.874049 eV Core-core repulsion = 15750.576588 eV Total energy + Delta-G solvation = -3068.297461 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17117 -37.85315 -37.06520 -34.52927 -33.84061 -32.44046 -30.90687 -28.87038 -27.59206 -25.52752 -23.61957 -22.51428 -21.57548 -19.97130 -18.33406 -17.55824 -16.39937 -15.69700 -15.38322 -15.23824 -14.70893 -14.46336 -14.07642 -13.80091 -13.69954 -13.59282 -13.06625 -12.70535 -12.46795 -12.10670 -12.02089 -11.82455 -11.30002 -11.22228 -11.14862 -10.88754 -10.77428 -10.60057 -10.56784 -9.91560 -9.64648 -9.45365 -9.29204 -8.52317 -8.44173 -7.37131 -6.08551 -4.10537 0.94915 1.67935 3.12888 3.19424 3.29173 3.35434 3.38583 4.36180 4.43654 4.59946 4.81198 5.13723 5.20790 5.26262 5.31946 5.39555 5.54031 5.59093 5.69733 5.76759 5.79654 5.91487 5.98668 6.05995 6.17304 6.36668 6.48841 6.68283 7.18257 7.24291 7.47687 7.71649 7.97526 8.08262 8.16230 8.44283 8.96666 9.54234 11.02290 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042300 B = 0.003551 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.771897 B = 7882.741810 C = 8286.596271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.011 3.989 3 Cl -0.071 7.071 4 C -0.213 4.213 5 C 0.550 3.450 6 O -0.546 6.546 7 N -0.599 5.599 8 C 0.117 3.883 9 C 0.051 3.949 10 N -0.535 5.535 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.039 3.961 21 C 0.109 3.891 22 H 0.093 0.907 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.141 0.859 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.098 0.902 30 H 0.032 0.968 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 16.915 -8.014 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.017 4.017 3 Cl -0.042 7.042 4 C -0.234 4.234 5 C 0.340 3.660 6 O -0.427 6.427 7 N -0.332 5.332 8 C -0.006 4.006 9 C -0.078 4.078 10 N -0.261 5.261 11 C 0.069 3.931 12 C -0.549 4.549 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.091 4.091 21 C -0.014 4.014 22 H 0.111 0.889 23 H 0.082 0.918 24 H 0.116 0.884 25 H 0.158 0.842 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.364 16.713 -8.352 19.186 hybrid contribution 0.062 -0.533 0.855 1.009 sum -4.302 16.180 -7.497 18.344 Atomic orbital electron populations 1.21220 0.87538 1.02308 1.05571 1.24104 0.95710 0.86230 0.95697 1.98396 1.76802 1.32940 1.96100 1.22749 1.01282 0.91600 1.07803 1.18001 0.86957 0.83739 0.77281 1.90773 1.13712 1.87237 1.50941 1.48071 1.07511 1.06442 1.71130 1.21885 0.96659 0.82435 0.99573 1.22354 0.90108 1.00727 0.94631 1.62088 1.03123 1.09428 1.51427 1.19730 0.95528 0.91153 0.86715 1.21138 1.29556 0.92499 1.11682 0.91775 1.24993 0.95223 0.99270 0.95079 1.69956 1.34956 1.33307 1.15511 0.86484 0.79268 0.84212 0.77370 1.20598 1.21322 1.19796 1.22407 0.99904 0.91263 0.95486 1.22028 0.78859 1.00405 1.00079 0.88908 0.91819 0.88381 0.84179 0.89319 0.90795 0.95736 0.88373 0.95010 0.99076 0.92855 0.89935 0.95425 0.90360 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 8.38 36.00 0.30 -0.83 16 2 C 0.01 0.12 6.57 -36.02 -0.24 -0.12 16 3 Cl -0.07 -0.67 28.94 -51.86 -1.50 -2.17 16 4 C -0.21 -2.43 9.09 -37.82 -0.34 -2.78 16 5 C 0.55 7.87 7.60 -12.78 -0.10 7.78 16 6 O -0.55 -8.86 12.59 5.24 0.07 -8.80 16 7 N -0.60 -8.78 3.01 -173.96 -0.52 -9.30 16 8 C 0.12 1.84 6.58 -3.60 -0.02 1.82 16 9 C 0.05 0.95 5.46 -3.70 -0.02 0.93 16 10 N -0.54 -10.86 4.62 -235.76 -1.09 -11.95 16 11 C 0.19 4.84 4.72 -4.98 -0.02 4.82 16 12 C -0.51 -13.83 8.41 -34.44 -0.29 -14.12 16 13 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 16 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 21 C 0.11 1.43 6.52 -3.60 -0.02 1.40 16 22 H 0.09 1.06 7.38 -51.93 -0.38 0.68 16 23 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 24 H 0.10 1.10 7.08 -51.93 -0.37 0.73 16 25 H 0.14 1.35 5.90 -52.48 -0.31 1.04 16 26 H 0.09 1.39 7.10 -51.93 -0.37 1.02 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 30 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 31 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.83 5.37 -51.93 -0.28 0.55 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -29.73 307.34 -8.50 -38.23 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.92 Total: -2.36 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.87 Total: 0.97 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.88 Total: -46.66 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.73 -8.50 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913761790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.671 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds