Wall clock time and date at job start Mon Mar 30 2020 01:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 Cl 1.73603 * 120.00128 * 2 1 4 4 C 1.33342 * 119.99761 * 180.02562 * 2 1 3 5 5 C 1.46832 * 120.00389 * 359.97438 * 4 2 1 6 6 O 1.21647 * 119.99745 * 5.54055 * 5 4 2 7 7 N 1.34777 * 120.00403 * 185.54127 * 5 4 2 8 8 C 1.47076 * 120.87906 * 174.99910 * 7 5 4 9 9 C 1.53245 * 108.52039 * 231.16088 * 8 7 5 10 10 N 1.46893 * 109.33917 * 306.17204 * 9 8 7 11 11 C 1.46896 * 111.00309 * 187.25115 * 10 9 8 12 12 C 1.50701 * 109.47227 * 65.69630 * 11 10 9 13 13 H 1.08005 * 119.99615 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00637 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99715 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00238 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47090 * 90.00191 * 16 14 12 18 18 H 1.48506 * 109.47055 * 209.99937 * 16 14 12 19 19 H 1.48497 * 109.47375 * 329.99894 * 16 14 12 20 20 C 1.46904 * 111.27232 * 63.10457 * 10 9 8 21 21 C 1.47076 * 120.87877 * 354.97547 * 7 5 4 22 22 H 1.08998 * 109.47530 * 240.00145 * 1 2 3 23 23 H 1.09001 * 109.47006 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47313 * 119.99685 * 1 2 3 25 25 H 1.08005 * 120.00110 * 179.97438 * 4 2 1 26 26 H 1.09001 * 109.63126 * 350.86910 * 8 7 5 27 27 H 1.09000 * 109.62818 * 111.45368 * 8 7 5 28 28 H 1.08998 * 109.49017 * 66.13275 * 9 8 7 29 29 H 1.09001 * 109.49293 * 186.21111 * 9 8 7 30 30 H 1.08995 * 109.47607 * 185.70105 * 11 10 9 31 31 H 1.09004 * 109.47300 * 305.70493 * 11 10 9 32 32 H 0.96998 * 119.99832 * 179.97438 * 15 14 12 33 33 H 1.08992 * 109.49561 * 176.93210 * 20 10 9 34 34 H 1.09003 * 109.49053 * 56.85052 * 20 10 9 35 35 H 1.08995 * 109.62816 * 248.54623 * 21 7 5 36 36 H 1.08993 * 109.63061 * 9.13266 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5034 0.0000 4 6 2.1736 -1.1548 -0.0005 5 6 1.4395 -2.4264 -0.0005 6 8 0.2273 -2.4288 -0.1018 7 7 2.1087 -3.5910 0.1117 8 6 1.3878 -4.8680 0.2236 9 6 1.9348 -5.6313 1.4346 10 7 3.3941 -5.7501 1.3160 11 6 3.9385 -6.6215 2.3659 12 6 3.4390 -8.0283 2.1601 13 1 2.7831 -8.2527 1.3319 14 6 3.8192 -9.0290 3.0290 15 7 4.6175 -8.7557 4.0378 16 14 3.2006 -10.7729 2.7734 17 1 4.1484 -11.5114 1.9009 18 1 3.0987 -11.4594 4.0863 19 1 1.8628 -10.7343 2.1300 20 6 4.0399 -4.4308 1.3398 21 6 3.5791 -3.6183 0.1249 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 3.2537 -1.1549 -0.0009 26 1 0.3235 -4.6769 0.3615 27 1 1.5428 -5.4565 -0.6807 28 1 1.6869 -5.0903 2.3478 29 1 1.4905 -6.6261 1.4686 30 1 5.0273 -6.6118 2.3178 31 1 3.6146 -6.2602 3.3420 32 1 4.8847 -9.4596 4.6494 33 1 5.1222 -4.5549 1.3051 34 1 3.7627 -3.9066 2.2543 35 1 3.9448 -4.0867 -0.7888 36 1 3.9636 -2.6011 0.1976 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913761790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:50 Heat of formation + Delta-G solvation = -32.555757 kcal Electronic energy + Delta-G solvation = -18819.697883 eV Core-core repulsion = 15750.576588 eV Total energy + Delta-G solvation = -3069.121296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33532 -39.19216 -37.94296 -36.04830 -34.76001 -34.39954 -32.20379 -30.33606 -28.82031 -27.16869 -24.93699 -24.03493 -23.03846 -21.27151 -19.48702 -18.62163 -18.44894 -16.85315 -16.75846 -16.44037 -16.17996 -15.95489 -15.43102 -15.25331 -14.93315 -14.80862 -14.14920 -14.09769 -13.81660 -13.57639 -13.11741 -12.86934 -12.84056 -12.75956 -12.56246 -12.34058 -12.24919 -12.12170 -11.98450 -11.72035 -11.32005 -10.74045 -10.60784 -10.34924 -9.69967 -9.05498 -8.20920 -6.30754 0.03483 0.82672 1.42870 1.43539 1.54558 2.02902 2.10962 2.40720 3.11566 3.22229 3.54565 3.68943 3.98954 4.07863 4.20144 4.25331 4.35210 4.43521 4.60431 4.68698 4.70727 4.81195 4.85028 4.93550 5.00151 5.02530 5.17368 5.22074 5.24083 5.45618 5.63979 6.03041 6.20283 6.39704 6.58397 6.84931 7.04499 7.39183 8.90204 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042300 B = 0.003551 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.771897 B = 7882.741810 C = 8286.596271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.020 3.980 3 Cl -0.054 7.054 4 C -0.220 4.220 5 C 0.548 3.452 6 O -0.570 6.570 7 N -0.606 5.606 8 C 0.129 3.871 9 C 0.056 3.944 10 N -0.539 5.539 11 C 0.208 3.792 12 C -0.523 4.523 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.264 1.264 20 C 0.035 3.965 21 C 0.118 3.882 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.162 0.838 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.010 0.990 29 H 0.080 0.920 30 H 0.011 0.989 31 H -0.041 1.041 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.089 0.911 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 17.938 -9.392 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.009 4.009 3 Cl -0.025 7.025 4 C -0.242 4.242 5 C 0.340 3.660 6 O -0.452 6.452 7 N -0.337 5.337 8 C 0.006 3.994 9 C -0.073 4.073 10 N -0.264 5.264 11 C 0.082 3.918 12 C -0.562 4.562 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.094 4.094 21 C -0.004 4.004 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.180 0.820 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.028 0.972 29 H 0.098 0.902 30 H 0.029 0.971 31 H -0.024 1.024 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.038 0.962 35 H 0.107 0.893 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.444 17.766 -9.752 20.748 hybrid contribution 0.080 -0.729 1.300 1.492 sum -4.364 17.037 -8.452 19.512 Atomic orbital electron populations 1.21177 0.87553 1.03336 1.04455 1.24168 0.95898 0.86744 0.94065 1.98408 1.76453 1.31749 1.95874 1.22681 1.02088 0.90285 1.09134 1.18421 0.86819 0.84360 0.76448 1.90767 1.14886 1.87607 1.51929 1.48130 1.08127 1.06110 1.71382 1.21635 0.96669 0.83008 0.98084 1.22276 0.89194 1.00108 0.95680 1.62007 1.04030 1.11293 1.49051 1.19378 0.94193 0.91661 0.86582 1.21471 1.29421 0.93624 1.11655 0.91615 1.25895 0.95315 1.03677 0.94705 1.70081 1.36237 1.34721 1.16473 0.85398 0.79091 0.78848 0.77389 1.19815 1.21052 1.18773 1.22556 1.00197 0.89540 0.97075 1.22094 0.77910 1.01899 0.98509 0.90184 0.89744 0.89300 0.82045 0.89169 0.90107 0.97156 0.90200 0.97105 1.02357 0.92711 0.89234 0.96177 0.89284 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 8.38 71.24 0.60 -1.46 16 2 C 0.02 0.38 6.57 24.58 0.16 0.54 16 3 Cl -0.05 -0.86 28.94 -2.72 -0.08 -0.94 16 4 C -0.22 -4.47 9.09 23.41 0.21 -4.25 16 5 C 0.55 14.74 7.60 86.49 0.66 15.40 16 6 O -0.57 -17.95 12.59 -4.18 -0.05 -18.01 16 7 N -0.61 -16.74 3.01 -822.52 -2.48 -19.22 16 8 C 0.13 3.99 6.58 86.35 0.57 4.56 16 9 C 0.06 2.15 5.46 86.39 0.47 2.62 16 10 N -0.54 -22.08 4.62 -899.82 -4.16 -26.24 16 11 C 0.21 10.77 4.72 85.56 0.40 11.18 16 12 C -0.52 -28.91 8.41 25.60 0.22 -28.69 16 13 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 16 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 C 0.04 1.13 5.62 86.38 0.49 1.61 16 21 C 0.12 2.80 6.52 86.35 0.56 3.36 16 22 H 0.08 1.76 7.38 -2.39 -0.02 1.74 16 23 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 24 H 0.09 1.89 7.08 -2.39 -0.02 1.87 16 25 H 0.16 2.48 5.90 -2.91 -0.02 2.47 16 26 H 0.09 2.78 7.10 -2.39 -0.02 2.76 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 3.30 6.67 -2.39 -0.02 3.28 16 30 H 0.01 0.60 7.97 -2.39 -0.02 0.58 16 31 H -0.04 -2.36 8.12 -2.38 -0.02 -2.38 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.12 1.97 5.37 -2.39 -0.01 1.95 16 Total: -1.00 -64.68 307.34 1.42 -63.26 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.08 Total: 5.35 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 4.80 Total: 5.44 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -6.35 Total: -100.70 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.01 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -64.68 1.42 -63.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913761790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.701 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds