Wall clock time and date at job start Mon Mar 30 2020 01:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29827 * 119.99643 * 2 1 4 4 N 1.40102 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.36343 * 127.10711 * 314.68651 * 4 3 2 6 6 N 1.30606 * 107.20057 * 179.83138 * 5 4 3 7 7 N 1.28540 * 109.90633 * 0.44364 * 6 5 4 8 8 C 1.30604 * 109.90384 * 359.71498 * 7 6 5 9 9 C 1.47329 * 119.99868 * 180.02562 * 2 1 3 10 10 C 1.39824 * 120.09162 * 359.71969 * 9 2 1 11 11 C 1.37700 * 119.91313 * 179.78757 * 10 9 2 12 12 C 1.39091 * 120.08628 * 0.49108 * 11 10 9 13 13 O 1.35639 * 119.91270 * 179.71897 * 12 11 10 14 14 C 1.34806 * 117.00137 * 174.47233 * 13 12 11 15 15 H 1.08007 * 119.99680 * 5.05670 * 14 13 12 16 16 C 1.38657 * 120.00245 * 185.05978 * 14 13 12 17 17 N 1.31548 * 120.00104 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47217 * 60.00070 * 18 16 14 20 20 H 1.48500 * 109.46724 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47212 * 299.99639 * 18 16 14 22 22 C 1.39096 * 120.17800 * 359.74196 * 12 11 10 23 23 C 1.37707 * 120.08603 * 0.02562 * 22 12 11 24 24 H 1.08999 * 109.47217 * 89.99630 * 1 2 3 25 25 H 1.09005 * 109.47020 * 329.99605 * 1 2 3 26 26 H 1.09004 * 109.47095 * 209.99869 * 1 2 3 27 27 H 1.07996 * 126.39938 * 0.02562 * 5 4 3 28 28 H 1.08002 * 126.39714 * 179.97438 * 8 7 6 29 29 H 1.08002 * 120.04132 * 0.02562 * 10 9 2 30 30 H 1.08001 * 119.95806 * 180.23319 * 11 10 9 31 31 H 0.96993 * 120.00457 * 179.97438 * 17 16 14 32 32 H 1.08001 * 119.95975 * 180.02562 * 22 12 11 33 33 H 1.07998 * 120.04468 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4556 2.3377 0.0005 5 6 0.3818 2.6679 -0.7720 6 7 0.0365 3.8864 -0.4529 7 7 0.8240 4.3407 0.4558 8 6 1.7104 3.4343 0.7697 9 6 2.2437 -1.2759 -0.0006 10 6 1.5465 -2.4879 0.0048 11 6 2.2386 -3.6783 -0.0002 12 6 3.6295 -3.6761 -0.0002 13 8 4.3078 -4.8508 0.0006 14 6 5.6491 -4.7831 -0.1152 15 1 6.1428 -3.8225 -0.1209 16 6 6.3950 -5.9466 -0.2269 17 7 5.7937 -7.1166 -0.2195 18 14 8.2537 -5.8527 -0.3881 19 1 8.8206 -5.1766 0.8063 20 1 8.8115 -7.2251 -0.4907 21 1 8.6065 -5.0820 -1.6074 22 6 4.3269 -2.4726 -0.0007 23 6 3.6420 -1.2779 -0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5138 27 1 -0.0961 2.0383 -1.5079 28 1 2.4984 3.5349 1.5013 29 1 0.4665 -2.4904 0.0090 30 1 1.7008 -4.6149 0.0002 31 1 6.3154 -7.9305 -0.2980 32 1 5.4069 -2.4750 -0.0011 33 1 4.1841 -0.3439 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916583971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:20 Heat of formation + Delta-G solvation = 124.362784 kcal Electronic energy + Delta-G solvation = -19187.441165 eV Core-core repulsion = 16024.016874 eV Total energy + Delta-G solvation = -3163.424291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.92879 -39.50056 -37.97487 -36.26793 -33.04854 -32.45121 -30.82242 -30.59255 -29.08992 -28.43687 -25.81781 -23.62687 -22.39598 -22.01898 -21.87812 -20.00122 -18.34689 -17.39734 -17.02166 -16.31183 -15.63748 -15.27451 -14.80239 -14.59940 -14.47640 -14.28026 -14.12025 -13.90897 -13.15379 -12.83489 -12.53206 -12.19769 -11.97565 -11.94878 -11.64088 -11.38178 -11.14168 -10.99165 -10.77377 -10.67060 -10.22396 -9.74666 -9.61016 -9.46027 -9.10334 -8.57376 -7.52059 -6.81930 -4.36390 0.77456 1.83300 1.96520 2.06348 2.52851 2.81149 2.95316 2.97596 2.99653 3.69366 4.20532 4.26328 4.27219 4.45329 4.73564 4.77491 4.88527 5.04651 5.10249 5.29325 5.40014 5.51467 5.54520 5.65645 5.83364 5.94255 6.02170 6.23992 6.31652 6.57259 6.68922 6.87189 6.99428 7.08199 7.40775 7.62959 7.76359 8.62038 8.62514 9.25322 10.33583 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039620 B = 0.003353 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.552827 B = 8347.761900 C = 8950.399959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.243 3.757 3 N -0.311 5.311 4 N -0.331 5.331 5 C 0.123 3.877 6 N -0.296 5.296 7 N -0.303 5.303 8 C 0.178 3.822 9 C -0.193 4.193 10 C -0.029 4.029 11 C -0.197 4.197 12 C 0.173 3.827 13 O -0.153 6.153 14 C -0.392 4.392 15 H 0.100 0.900 16 C 0.044 3.956 17 N -0.845 5.845 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.266 1.266 22 C -0.246 4.246 23 C -0.008 4.008 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.212 0.788 28 H 0.219 0.781 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.278 0.722 32 H 0.134 0.866 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 7.890 0.346 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.064 3.936 3 N -0.121 5.121 4 N -0.106 5.106 5 C -0.165 4.165 6 N -0.137 5.137 7 N -0.144 5.144 8 C -0.109 4.109 9 C -0.198 4.198 10 C -0.050 4.050 11 C -0.217 4.217 12 C 0.114 3.886 13 O -0.052 6.052 14 C -0.468 4.468 15 H 0.117 0.883 16 C -0.164 4.164 17 N -0.477 5.477 18 Si 0.770 3.230 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.191 1.191 22 C -0.266 4.266 23 C -0.028 4.028 24 H 0.112 0.888 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.229 0.771 28 H 0.235 0.765 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.813 9.168 0.360 10.861 hybrid contribution 0.934 -1.463 -0.170 1.744 sum -4.879 7.706 0.189 9.122 Atomic orbital electron populations 1.21784 0.91900 1.05063 1.04313 1.23989 0.94003 0.92037 0.83575 1.76057 1.18426 0.88928 1.28654 1.47837 1.22757 1.11197 1.28765 1.26966 0.91024 0.97119 1.01360 1.74195 1.21157 1.07426 1.10940 1.74298 1.04088 1.24482 1.11483 1.26577 1.02677 0.82698 0.98971 1.17571 0.92868 0.88272 1.21125 1.20748 0.98541 0.90560 0.95133 1.20116 0.91360 0.98157 1.12050 1.19621 0.91735 0.86303 0.90893 1.83917 1.21552 1.25620 1.74141 1.21512 0.78092 0.95265 1.51898 0.88257 1.25447 1.01296 0.93998 0.95657 1.70010 1.37285 0.97843 1.42533 0.85676 0.79333 0.78357 0.79633 1.19072 1.19938 1.19062 1.21120 1.01012 0.91617 1.12829 1.20979 0.92506 0.97530 0.91766 0.88782 0.90622 0.88639 0.77122 0.76481 0.86029 0.85633 0.91243 0.84855 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 7.99 36.01 0.29 -1.32 16 2 C 0.24 3.11 7.02 -79.74 -0.56 2.55 16 3 N -0.31 -4.35 10.74 35.09 0.38 -3.98 16 4 N -0.33 -4.46 3.27 -14.72 -0.05 -4.51 16 5 C 0.12 1.58 10.31 -89.09 -0.92 0.66 16 6 N -0.30 -4.53 12.20 29.87 0.36 -4.17 16 7 N -0.30 -4.66 12.20 29.87 0.36 -4.29 16 8 C 0.18 2.35 13.05 -89.08 -1.16 1.18 16 9 C -0.19 -2.86 5.87 -105.01 -0.62 -3.47 16 10 C -0.03 -0.42 9.35 -39.19 -0.37 -0.79 16 11 C -0.20 -3.45 9.97 -39.46 -0.39 -3.84 16 12 C 0.17 3.61 6.66 -38.95 -0.26 3.35 16 13 O -0.15 -3.86 9.75 0.46 0.00 -3.86 16 14 C -0.39 -9.77 9.48 30.89 0.29 -9.47 16 15 H 0.10 2.25 5.18 -52.48 -0.27 1.98 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.85 -22.41 13.67 55.48 0.76 -21.65 16 18 Si 0.95 18.43 29.55 -169.99 -5.02 13.41 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 22 C -0.25 -4.66 9.15 -39.46 -0.36 -5.02 16 23 C -0.01 -0.13 9.57 -39.18 -0.37 -0.50 16 24 H 0.09 0.69 7.50 -51.93 -0.39 0.30 16 25 H 0.08 0.76 6.25 -51.93 -0.32 0.43 16 26 H 0.09 0.76 6.46 -51.93 -0.34 0.43 16 27 H 0.21 1.96 6.96 -52.49 -0.37 1.60 16 28 H 0.22 2.10 8.06 -52.49 -0.42 1.67 16 29 H 0.12 1.28 6.34 -52.49 -0.33 0.95 16 30 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.13 2.52 5.62 -52.49 -0.29 2.23 16 33 H 0.12 1.86 7.55 -52.49 -0.40 1.46 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -29.32 292.91 -6.01 -35.33 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -2.69 Total: 4.99 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -4.53 Total: -15.69 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 1.82 Total: -38.60 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.00 Total: -3.86 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.32 -6.01 -35.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916583971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.693 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds