Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29827 * 119.99643 * 2 1 4 4 N 1.40102 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.36343 * 127.10711 * 314.68651 * 4 3 2 6 6 N 1.30606 * 107.20057 * 179.83138 * 5 4 3 7 7 N 1.28540 * 109.90633 * 0.44364 * 6 5 4 8 8 C 1.30604 * 109.90384 * 359.71498 * 7 6 5 9 9 C 1.47329 * 119.99868 * 180.02562 * 2 1 3 10 10 C 1.39824 * 120.09162 * 359.71969 * 9 2 1 11 11 C 1.37700 * 119.91313 * 179.78757 * 10 9 2 12 12 C 1.39091 * 120.08628 * 0.49108 * 11 10 9 13 13 O 1.35639 * 119.91270 * 179.71897 * 12 11 10 14 14 C 1.34806 * 117.00137 * 174.47233 * 13 12 11 15 15 H 1.08007 * 119.99680 * 5.05670 * 14 13 12 16 16 C 1.38657 * 120.00245 * 185.05978 * 14 13 12 17 17 N 1.31548 * 120.00104 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47217 * 60.00070 * 18 16 14 20 20 H 1.48500 * 109.46724 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47212 * 299.99639 * 18 16 14 22 22 C 1.39096 * 120.17800 * 359.74196 * 12 11 10 23 23 C 1.37707 * 120.08603 * 0.02562 * 22 12 11 24 24 H 1.08999 * 109.47217 * 89.99630 * 1 2 3 25 25 H 1.09005 * 109.47020 * 329.99605 * 1 2 3 26 26 H 1.09004 * 109.47095 * 209.99869 * 1 2 3 27 27 H 1.07996 * 126.39938 * 0.02562 * 5 4 3 28 28 H 1.08002 * 126.39714 * 179.97438 * 8 7 6 29 29 H 1.08002 * 120.04132 * 0.02562 * 10 9 2 30 30 H 1.08001 * 119.95806 * 180.23319 * 11 10 9 31 31 H 0.96993 * 120.00457 * 179.97438 * 17 16 14 32 32 H 1.08001 * 119.95975 * 180.02562 * 22 12 11 33 33 H 1.07998 * 120.04468 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4556 2.3377 0.0005 5 6 0.3818 2.6679 -0.7720 6 7 0.0365 3.8864 -0.4529 7 7 0.8240 4.3407 0.4558 8 6 1.7104 3.4343 0.7697 9 6 2.2437 -1.2759 -0.0006 10 6 1.5465 -2.4879 0.0048 11 6 2.2386 -3.6783 -0.0002 12 6 3.6295 -3.6761 -0.0002 13 8 4.3078 -4.8508 0.0006 14 6 5.6491 -4.7831 -0.1152 15 1 6.1428 -3.8225 -0.1209 16 6 6.3950 -5.9466 -0.2269 17 7 5.7937 -7.1166 -0.2195 18 14 8.2537 -5.8527 -0.3881 19 1 8.8206 -5.1766 0.8063 20 1 8.8115 -7.2251 -0.4907 21 1 8.6065 -5.0820 -1.6074 22 6 4.3269 -2.4726 -0.0007 23 6 3.6420 -1.2779 -0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5138 27 1 -0.0961 2.0383 -1.5079 28 1 2.4984 3.5349 1.5013 29 1 0.4665 -2.4904 0.0090 30 1 1.7008 -4.6149 0.0002 31 1 6.3154 -7.9305 -0.2980 32 1 5.4069 -2.4750 -0.0011 33 1 4.1841 -0.3439 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916583971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = 108.417542 kcal Electronic energy + Delta-G solvation = -19188.132603 eV Core-core repulsion = 16024.016874 eV Total energy + Delta-G solvation = -3164.115729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.97812 -40.96032 -39.26747 -37.58753 -34.51210 -33.80656 -32.13863 -31.67788 -30.33727 -29.48607 -27.50192 -24.79639 -23.68191 -23.21745 -23.08012 -21.19496 -19.89699 -18.94191 -18.18377 -17.37098 -16.70453 -16.56749 -16.15948 -16.02983 -15.68611 -15.50431 -15.43650 -15.02014 -14.60718 -14.22620 -13.67161 -13.46291 -13.19481 -13.15368 -12.88408 -12.70085 -12.49542 -12.39523 -12.17142 -11.85269 -11.38491 -11.21631 -10.88824 -10.64299 -10.51667 -9.92453 -9.00628 -8.55046 -6.21589 -0.37956 0.56364 0.75044 0.99090 1.30790 1.36564 1.48918 1.51551 1.76078 2.13835 2.78189 3.10989 3.14994 3.33723 3.41500 3.54673 3.91608 4.02923 4.06291 4.17678 4.40696 4.43338 4.50210 4.55066 4.65251 4.84737 4.91245 4.99493 5.04994 5.18370 5.25140 5.47817 5.58534 5.61838 5.94292 6.00813 6.70114 6.89590 7.58144 7.63343 8.66066 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039620 B = 0.003353 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.552827 B = 8347.761900 C = 8950.399959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.248 3.752 3 N -0.317 5.317 4 N -0.338 5.338 5 C 0.137 3.863 6 N -0.329 5.329 7 N -0.332 5.332 8 C 0.182 3.818 9 C -0.168 4.168 10 C -0.009 4.009 11 C -0.206 4.206 12 C 0.145 3.855 13 O -0.212 6.212 14 C -0.417 4.417 15 H 0.107 0.893 16 C -0.014 4.014 17 N -0.909 5.909 18 Si 1.015 2.985 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.255 4.255 23 C -0.013 4.013 24 H 0.124 0.876 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.246 0.754 28 H 0.246 0.754 29 H 0.174 0.826 30 H 0.131 0.869 31 H 0.276 0.724 32 H 0.124 0.876 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 10.462 0.144 13.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.066 3.934 3 N -0.125 5.125 4 N -0.113 5.113 5 C -0.152 4.152 6 N -0.168 5.168 7 N -0.172 5.172 8 C -0.106 4.106 9 C -0.172 4.172 10 C -0.028 4.028 11 C -0.225 4.225 12 C 0.091 3.909 13 O -0.116 6.116 14 C -0.493 4.493 15 H 0.124 0.876 16 C -0.214 4.214 17 N -0.545 5.545 18 Si 0.834 3.166 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.182 1.182 22 C -0.274 4.274 23 C -0.033 4.033 24 H 0.142 0.858 25 H 0.091 0.909 26 H 0.135 0.865 27 H 0.262 0.738 28 H 0.262 0.738 29 H 0.191 0.809 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.781 11.840 0.162 14.169 hybrid contribution 1.125 -1.711 -0.094 2.049 sum -6.657 10.129 0.068 12.121 Atomic orbital electron populations 1.21913 0.88581 1.06022 1.06456 1.24026 0.95983 0.90580 0.82797 1.75994 1.19501 0.89601 1.27427 1.47882 1.23167 1.10971 1.29328 1.27590 0.90112 0.96620 1.00846 1.74149 1.22102 1.08815 1.11765 1.74256 1.05071 1.25575 1.12316 1.27154 1.02534 0.82057 0.98838 1.17886 0.92317 0.89807 1.17225 1.21218 1.00913 0.88642 0.92065 1.20449 0.90181 1.00042 1.11875 1.20241 0.93255 0.86143 0.91247 1.83911 1.21657 1.27445 1.78566 1.21862 0.78786 0.95807 1.52843 0.87576 1.26554 1.05973 0.93472 0.95353 1.70137 1.38926 0.98533 1.46954 0.84687 0.73511 0.78413 0.79975 1.18126 1.19659 1.18162 1.21181 1.00902 0.92149 1.13180 1.21165 0.93659 0.96933 0.91557 0.85811 0.90897 0.86524 0.73799 0.73817 0.80855 0.85074 0.91461 0.85856 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 7.99 71.24 0.57 -1.51 16 2 C 0.25 5.01 7.02 45.25 0.32 5.33 16 3 N -0.32 -7.44 10.74 -42.90 -0.46 -7.90 16 4 N -0.34 -7.74 3.27 -200.50 -0.66 -8.40 16 5 C 0.14 2.93 10.31 179.81 1.85 4.78 16 6 N -0.33 -9.14 12.20 -59.42 -0.72 -9.87 16 7 N -0.33 -9.45 12.20 -59.41 -0.72 -10.18 16 8 C 0.18 4.22 13.05 179.81 2.35 6.57 16 9 C -0.17 -4.26 5.87 -20.12 -0.12 -4.38 16 10 C -0.01 -0.21 9.35 22.53 0.21 0.00 16 11 C -0.21 -6.94 9.97 22.35 0.22 -6.72 16 12 C 0.15 6.21 6.66 22.68 0.15 6.36 16 13 O -0.21 -11.41 9.75 -21.26 -0.21 -11.62 16 14 C -0.42 -22.16 9.48 67.92 0.64 -21.52 16 15 H 0.11 5.13 5.18 -2.91 -0.02 5.12 16 16 C -0.01 -0.72 5.49 84.84 0.47 -0.26 16 17 N -0.91 -51.76 13.67 21.61 0.30 -51.47 16 18 Si 1.01 39.57 29.55 68.60 2.03 41.60 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 22 C -0.25 -9.72 9.15 22.35 0.20 -9.51 16 23 C -0.01 -0.41 9.57 22.53 0.22 -0.19 16 24 H 0.12 0.89 7.50 -2.39 -0.02 0.88 16 25 H 0.07 1.03 6.25 -2.38 -0.01 1.02 16 26 H 0.12 1.00 6.46 -2.39 -0.02 0.98 16 27 H 0.25 3.19 6.96 -2.91 -0.02 3.16 16 28 H 0.25 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.17 2.44 6.34 -2.91 -0.02 2.42 16 30 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.12 4.87 5.62 -2.91 -0.02 4.85 16 33 H 0.13 3.77 7.55 -2.91 -0.02 3.75 16 Total: -1.00 -69.81 292.91 7.80 -62.01 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.16 Total: 16.88 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 7.08 Total: -21.06 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.27 Total: -87.81 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.21 Total: -11.62 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -69.81 7.80 -62.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916583971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.428 kcal (2) G-P(sol) polarization free energy of solvation -69.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds