Wall clock time and date at job start Mon Mar 30 2020 00:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47314 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.47184 * 30.00140 * 3 2 1 6 6 H 1.48505 * 109.47325 * 149.99681 * 3 2 1 7 7 C 1.37876 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99949 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00201 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47167 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99882 * 179.97438 * 10 9 7 12 12 O 1.21518 * 119.99947 * 0.02562 * 11 10 9 13 13 C 1.48156 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.39949 * 120.89173 * 0.02562 * 13 11 10 15 15 C 1.38037 * 119.13486 * 179.97438 * 14 13 11 16 16 N 1.31854 * 120.98347 * 359.97076 * 15 14 13 17 17 C 1.32227 * 121.97421 * 0.02898 * 16 15 14 18 18 N 1.39850 * 119.62856 * 179.97438 * 17 16 15 19 19 C 1.37172 * 126.48071 * 4.71465 * 18 17 16 20 20 C 1.34623 * 106.82608 * 179.87693 * 19 18 17 21 21 N 1.34158 * 108.21236 * 0.38644 * 20 19 18 22 22 C 1.30476 * 109.37282 * 359.75379 * 21 20 19 23 23 C 1.38913 * 120.74576 * 359.97438 * 17 16 15 24 24 H 0.96997 * 120.00171 * 0.02562 * 1 2 3 25 25 H 1.08989 * 109.47269 * 59.99795 * 9 7 2 26 26 H 1.09003 * 109.46625 * 300.00062 * 9 7 2 27 27 H 0.96994 * 119.99935 * 359.97438 * 10 9 7 28 28 H 1.07993 * 120.43139 * 359.95267 * 14 13 11 29 29 H 1.08004 * 119.50966 * 179.97438 * 15 14 13 30 30 H 1.08000 * 126.59161 * 359.97438 * 19 18 17 31 31 H 1.07994 * 125.89397 * 180.14338 * 20 19 18 32 32 H 1.08006 * 125.72498 * 179.97438 * 22 21 20 33 33 H 1.07999 * 120.52602 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1145 -1.8980 0.0014 13 6 5.8187 -4.2185 0.0002 14 6 4.9260 -5.2962 -0.0009 15 6 5.4258 -6.5829 -0.0021 16 7 6.7253 -6.8063 -0.0027 17 6 7.6054 -5.8195 -0.0017 18 7 8.9728 -6.1127 -0.0019 19 6 9.5398 -7.3584 -0.0937 20 6 10.8741 -7.1827 -0.0590 21 7 11.1212 -5.8694 0.0595 22 6 9.9913 -5.2179 0.0948 23 6 7.1871 -4.4949 -0.0004 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6801 0.8910 26 1 3.8752 -0.6804 -0.8889 27 1 3.3695 -3.3126 0.0010 28 1 3.8600 -5.1234 -0.0005 29 1 4.7423 -7.4191 -0.0025 30 1 9.0165 -8.2992 -0.1792 31 1 11.6173 -7.9644 -0.1128 32 1 9.8833 -4.1471 0.1859 33 1 7.9090 -3.6916 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918549950.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:05 Heat of formation + Delta-G solvation = 74.383278 kcal Electronic energy + Delta-G solvation = -19199.492010 eV Core-core repulsion = 16033.900445 eV Total energy + Delta-G solvation = -3165.591565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.58819 -40.61172 -38.84777 -34.78062 -34.42646 -33.07910 -32.42440 -30.46413 -29.51445 -28.26624 -25.02767 -24.41155 -22.51903 -21.65035 -21.07175 -20.33970 -19.13503 -17.48183 -16.72957 -16.57279 -16.01587 -15.91032 -15.21497 -14.93099 -14.90434 -14.21427 -14.17271 -14.08557 -13.88932 -13.73654 -13.21690 -12.54269 -12.43026 -12.27396 -11.17787 -11.05568 -10.89337 -10.43350 -10.33851 -10.20535 -10.09518 -9.68220 -9.62769 -9.10970 -8.92437 -8.73990 -8.44120 -6.33352 -4.37447 0.27034 0.50791 1.88380 2.12544 2.84965 2.98463 3.18124 3.24984 3.32203 3.40898 3.63714 3.94431 4.22362 4.29767 4.39466 4.51223 4.58380 4.69058 4.99483 5.01845 5.15370 5.24299 5.30731 5.45315 5.71630 5.85616 6.01907 6.41180 6.59540 6.82560 6.87420 6.88749 7.18768 7.36347 7.71704 7.88130 8.26089 8.47224 8.65183 9.25039 10.78267 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038782 B = 0.003528 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.803405 B = 7933.668201 C = 8639.179624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.219 3.781 10 N -0.688 5.688 11 C 0.540 3.460 12 O -0.541 6.541 13 C -0.046 4.046 14 C -0.151 4.151 15 C 0.132 3.868 16 N -0.489 5.489 17 C 0.337 3.663 18 N -0.409 5.409 19 C -0.027 4.027 20 C -0.033 4.033 21 N -0.480 5.480 22 C 0.196 3.804 23 C -0.126 4.126 24 H 0.269 0.731 25 H 0.031 0.969 26 H 0.026 0.974 27 H 0.398 0.602 28 H 0.153 0.847 29 H 0.175 0.825 30 H 0.182 0.818 31 H 0.176 0.824 32 H 0.214 0.786 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.656 -14.486 -0.061 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.097 3.903 10 N -0.336 5.336 11 C 0.324 3.676 12 O -0.420 6.420 13 C -0.058 4.058 14 C -0.172 4.172 15 C -0.026 4.026 16 N -0.202 5.202 17 C 0.110 3.890 18 N -0.091 5.091 19 C -0.156 4.156 20 C -0.177 4.177 21 N -0.196 5.196 22 C -0.085 4.085 23 C -0.149 4.149 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.233 0.767 28 H 0.171 0.829 29 H 0.192 0.808 30 H 0.199 0.801 31 H 0.193 0.807 32 H 0.230 0.770 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.032 -14.164 -0.018 19.938 hybrid contribution -1.210 0.917 -0.067 1.520 sum 12.822 -13.247 -0.085 18.436 Atomic orbital electron populations 1.69864 1.06225 1.27641 1.48792 1.24778 0.94807 0.99206 0.93669 0.86825 0.80570 0.83197 0.79164 1.19730 1.20750 1.18467 1.21024 0.88185 0.95368 1.54123 0.90129 1.19632 0.95602 0.77733 0.97297 1.46157 1.05042 1.11783 1.70656 1.18044 0.83733 0.87087 0.78773 1.90760 1.55524 1.44945 1.50722 1.20516 0.93072 0.95120 0.97085 1.22525 1.01873 0.92920 0.99844 1.22570 0.89492 0.96604 0.93913 1.66837 1.03676 1.35312 1.14331 1.18010 0.83242 0.89498 0.98289 1.43125 1.03705 1.08657 1.53648 1.22923 0.94536 0.89043 1.09135 1.22408 0.93942 0.93752 1.07631 1.70352 1.25423 1.05430 1.18442 1.25462 0.80625 0.97684 1.04740 1.21640 0.96754 0.95384 1.01151 0.92075 0.95139 0.95606 0.76657 0.82925 0.80804 0.80097 0.80696 0.76979 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.96 55.43 0.77 -24.54 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.55 -14.15 9.83 -34.44 -0.34 -14.49 16 8 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 9 C 0.22 4.99 4.50 -5.19 -0.02 4.97 16 10 N -0.69 -12.59 5.51 -62.33 -0.34 -12.93 16 11 C 0.54 9.41 7.80 -12.19 -0.10 9.32 16 12 O -0.54 -11.23 16.44 5.35 0.09 -11.14 16 13 C -0.05 -0.62 5.91 -104.68 -0.62 -1.23 16 14 C -0.15 -1.54 9.61 -39.01 -0.37 -1.92 16 15 C 0.13 1.21 11.17 -17.62 -0.20 1.01 16 16 N -0.49 -5.54 9.87 -12.34 -0.12 -5.66 16 17 C 0.34 4.07 7.50 -154.42 -1.16 2.91 16 18 N -0.41 -4.80 2.98 -63.84 -0.19 -4.99 16 19 C -0.03 -0.28 11.17 -16.44 -0.18 -0.47 16 20 C -0.03 -0.35 11.85 -17.81 -0.21 -0.56 16 21 N -0.48 -6.10 11.24 -14.47 -0.16 -6.26 16 22 C 0.20 2.25 11.89 -89.59 -1.07 1.19 16 23 C -0.13 -1.58 9.07 -38.82 -0.35 -1.93 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 26 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 27 H 0.40 6.16 6.46 -40.82 -0.26 5.90 16 28 H 0.15 1.26 6.53 -52.49 -0.34 0.92 16 29 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.21 1.84 7.07 -52.48 -0.37 1.47 16 33 H 0.16 1.83 6.46 -52.49 -0.34 1.49 16 LS Contribution 295.59 15.07 4.45 4.45 Total: -1.00 -32.66 295.59 -7.82 -40.47 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.93 Total: 3.99 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -4.71 Total: 0.86 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.04 Total: -54.38 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.66 -7.82 -40.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918549950.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.855 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds