Wall clock time and date at job start Mon Mar 30 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47314 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.47184 * 30.00140 * 3 2 1 6 6 H 1.48505 * 109.47325 * 149.99681 * 3 2 1 7 7 C 1.37876 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99949 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00201 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47167 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99882 * 179.97438 * 10 9 7 12 12 O 1.21518 * 119.99947 * 0.02562 * 11 10 9 13 13 C 1.48156 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.39949 * 120.89173 * 0.02562 * 13 11 10 15 15 C 1.38037 * 119.13486 * 179.97438 * 14 13 11 16 16 N 1.31854 * 120.98347 * 359.97076 * 15 14 13 17 17 C 1.32227 * 121.97421 * 0.02898 * 16 15 14 18 18 N 1.39850 * 119.62856 * 179.97438 * 17 16 15 19 19 C 1.37172 * 126.48071 * 4.71465 * 18 17 16 20 20 C 1.34623 * 106.82608 * 179.87693 * 19 18 17 21 21 N 1.34158 * 108.21236 * 0.38644 * 20 19 18 22 22 C 1.30476 * 109.37282 * 359.75379 * 21 20 19 23 23 C 1.38913 * 120.74576 * 359.97438 * 17 16 15 24 24 H 0.96997 * 120.00171 * 0.02562 * 1 2 3 25 25 H 1.08989 * 109.47269 * 59.99795 * 9 7 2 26 26 H 1.09003 * 109.46625 * 300.00062 * 9 7 2 27 27 H 0.96994 * 119.99935 * 359.97438 * 10 9 7 28 28 H 1.07993 * 120.43139 * 359.95267 * 14 13 11 29 29 H 1.08004 * 119.50966 * 179.97438 * 15 14 13 30 30 H 1.08000 * 126.59161 * 359.97438 * 19 18 17 31 31 H 1.07994 * 125.89397 * 180.14338 * 20 19 18 32 32 H 1.08006 * 125.72498 * 179.97438 * 22 21 20 33 33 H 1.07999 * 120.52602 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1145 -1.8980 0.0014 13 6 5.8187 -4.2185 0.0002 14 6 4.9260 -5.2962 -0.0009 15 6 5.4258 -6.5829 -0.0021 16 7 6.7253 -6.8063 -0.0027 17 6 7.6054 -5.8195 -0.0017 18 7 8.9728 -6.1127 -0.0019 19 6 9.5398 -7.3584 -0.0937 20 6 10.8741 -7.1827 -0.0590 21 7 11.1212 -5.8694 0.0595 22 6 9.9913 -5.2179 0.0948 23 6 7.1871 -4.4949 -0.0004 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6801 0.8910 26 1 3.8752 -0.6804 -0.8889 27 1 3.3695 -3.3126 0.0010 28 1 3.8600 -5.1234 -0.0005 29 1 4.7423 -7.4191 -0.0025 30 1 9.0165 -8.2992 -0.1792 31 1 11.6173 -7.9644 -0.1128 32 1 9.8833 -4.1471 0.1859 33 1 7.9090 -3.6916 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918549950.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:04 Heat of formation + Delta-G solvation = 53.455262 kcal Electronic energy + Delta-G solvation = -19200.399517 eV Core-core repulsion = 16033.900445 eV Total energy + Delta-G solvation = -3166.499072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.42987 -41.63030 -40.15316 -36.36585 -35.43514 -34.51237 -33.88205 -31.37675 -30.33418 -30.01847 -26.22442 -25.30976 -24.01016 -22.81436 -21.95522 -21.54357 -20.30303 -18.89080 -18.11712 -17.69278 -16.99285 -16.91760 -16.60355 -16.34444 -16.22861 -15.54989 -14.98620 -14.92862 -14.90076 -14.87284 -14.50563 -14.29863 -14.15910 -13.20232 -13.07713 -12.73137 -11.94810 -11.92793 -11.68375 -11.50100 -11.27356 -11.20222 -10.92854 -10.87471 -10.08989 -9.94683 -9.55665 -8.40309 -6.47784 -0.65929 -0.39488 1.04714 1.28209 1.33667 1.37153 1.47624 1.77579 2.03070 2.09206 2.27950 2.64015 2.95729 3.14704 3.37363 3.46516 3.61500 3.75094 3.77930 4.15068 4.32542 4.44602 4.52061 4.61185 4.74492 4.84890 4.98568 5.03414 5.19689 5.25960 5.33942 5.63922 5.98724 6.04017 6.50630 6.52924 6.64998 6.88477 7.05687 7.22487 8.73957 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038782 B = 0.003528 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.803405 B = 7933.668201 C = 8639.179624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.229 3.771 10 N -0.688 5.688 11 C 0.544 3.456 12 O -0.578 6.578 13 C -0.063 4.063 14 C -0.137 4.137 15 C 0.144 3.856 16 N -0.493 5.493 17 C 0.331 3.669 18 N -0.415 5.415 19 C -0.031 4.031 20 C -0.041 4.041 21 N -0.508 5.508 22 C 0.187 3.813 23 C -0.131 4.131 24 H 0.272 0.728 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.412 0.588 28 H 0.175 0.825 29 H 0.218 0.782 30 H 0.200 0.800 31 H 0.200 0.800 32 H 0.230 0.770 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.051 -15.998 -0.111 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.106 3.894 10 N -0.337 5.337 11 C 0.330 3.670 12 O -0.460 6.460 13 C -0.074 4.074 14 C -0.158 4.158 15 C -0.014 4.014 16 N -0.205 5.205 17 C 0.104 3.896 18 N -0.098 5.098 19 C -0.160 4.160 20 C -0.185 4.185 21 N -0.226 5.226 22 C -0.094 4.094 23 C -0.154 4.154 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.250 0.750 28 H 0.192 0.808 29 H 0.235 0.765 30 H 0.217 0.783 31 H 0.217 0.783 32 H 0.246 0.754 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.442 -15.716 -0.070 21.344 hybrid contribution -1.342 1.250 -0.052 1.835 sum 13.099 -14.467 -0.121 19.516 Atomic orbital electron populations 1.69964 1.07671 1.28637 1.50489 1.25548 0.95482 1.02557 0.93609 0.85919 0.79399 0.79538 0.79436 1.19070 1.20117 1.18181 1.21250 0.89668 0.94766 1.52813 0.91701 1.19232 0.93652 0.80172 0.96347 1.45906 1.05977 1.10510 1.71309 1.18531 0.82774 0.88593 0.77063 1.90734 1.56283 1.46757 1.52188 1.20124 0.93926 0.93265 1.00101 1.22791 1.02486 0.92483 0.98064 1.23277 0.89203 0.97299 0.91627 1.66951 1.04459 1.35032 1.14083 1.18013 0.83572 0.89363 0.98674 1.43223 1.03664 1.09121 1.53749 1.23296 0.94654 0.89326 1.08684 1.22886 0.94778 0.93641 1.07199 1.70354 1.26199 1.06598 1.19426 1.25849 0.80531 0.98515 1.04515 1.21618 0.96522 0.95856 1.01414 0.91836 0.96258 0.96396 0.75015 0.80815 0.76533 0.78277 0.78324 0.75425 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.25 13.96 21.45 0.30 -52.95 16 2 C 0.03 1.55 5.47 84.65 0.46 2.01 16 3 Si 0.93 41.95 27.47 68.60 1.88 43.84 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.26 -11.38 6.54 99.48 0.65 -10.73 16 7 C -0.55 -28.19 9.83 25.60 0.25 -27.94 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.44 16 9 C 0.23 10.38 4.50 85.63 0.38 10.77 16 10 N -0.69 -24.60 5.51 -469.40 -2.58 -27.18 16 11 C 0.54 18.63 7.80 86.88 0.68 19.31 16 12 O -0.58 -24.11 16.44 -3.77 -0.06 -24.17 16 13 C -0.06 -1.58 5.91 -19.90 -0.12 -1.70 16 14 C -0.14 -2.40 9.61 22.64 0.22 -2.19 16 15 C 0.14 2.08 11.17 84.64 0.95 3.03 16 16 N -0.49 -9.70 9.87 -192.94 -1.90 -11.60 16 17 C 0.33 7.41 7.50 132.77 1.00 8.41 16 18 N -0.42 -9.22 2.98 -355.90 -1.06 -10.28 16 19 C -0.03 -0.60 11.17 83.03 0.93 0.33 16 20 C -0.04 -0.83 11.85 83.51 0.99 0.16 16 21 N -0.51 -12.59 11.24 -199.68 -2.24 -14.83 16 22 C 0.19 4.19 11.89 179.99 2.14 6.33 16 23 C -0.13 -3.15 9.07 22.76 0.21 -2.94 16 24 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 26 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 27 H 0.41 12.17 6.46 -92.71 -0.60 11.57 16 28 H 0.17 2.26 6.53 -2.91 -0.02 2.24 16 29 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 31 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.23 3.94 7.07 -2.91 -0.02 3.92 16 33 H 0.15 3.62 6.46 -2.91 -0.02 3.60 16 Total: -1.00 -70.29 295.59 2.92 -67.37 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.51 Total: 14.23 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 8.08 Total: 15.58 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -7.50 Total: -116.85 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Total: -70.29 2.92 -67.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918549950.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.824 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds