Wall clock time and date at job start Mon Mar 30 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00085 * 2 1 4 4 C 1.50698 * 109.47417 * 66.04172 * 3 2 1 5 5 C 1.34860 * 125.87612 * 94.69383 * 4 3 2 6 6 C 1.40937 * 107.43203 * 179.85331 * 5 4 3 7 7 Cl 1.73605 * 126.29538 * 180.16067 * 6 5 4 8 8 C 1.34909 * 107.41122 * 0.41212 * 6 5 4 9 9 N 1.36331 * 125.87905 * 275.00635 * 4 3 2 10 10 C 1.46499 * 125.63959 * 0.03051 * 9 4 3 11 11 C 1.46896 * 111.00141 * 236.04164 * 2 1 3 12 12 C 1.53002 * 109.47246 * 293.95232 * 11 2 1 13 13 H 1.09000 * 109.46986 * 60.00111 * 12 11 2 14 14 O 1.42898 * 109.47113 * 300.00070 * 12 11 2 15 15 C 1.50706 * 109.46931 * 179.97438 * 12 11 2 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.09000 * 109.46850 * 183.95502 * 1 2 3 24 24 H 1.09000 * 109.47134 * 303.95834 * 1 2 3 25 25 H 1.08996 * 109.46988 * 63.95862 * 1 2 3 26 26 H 1.08996 * 109.47380 * 186.04984 * 3 2 1 27 27 H 1.09004 * 109.46708 * 306.04257 * 3 2 1 28 28 H 1.08004 * 126.28013 * 359.97438 * 5 4 3 29 29 H 1.08001 * 125.90632 * 179.72939 * 8 6 5 30 30 H 1.09000 * 109.46991 * 90.00231 * 10 9 4 31 31 H 1.09002 * 109.47116 * 210.00241 * 10 9 4 32 32 H 1.08999 * 109.47145 * 330.00368 * 10 9 4 33 33 H 1.09004 * 109.47535 * 173.95380 * 11 2 1 34 34 H 1.09004 * 109.47041 * 53.95419 * 11 2 1 35 35 H 0.96701 * 113.99881 * 299.99463 * 14 12 11 36 36 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 6 2.4195 2.1193 2.3943 6 6 1.7067 2.8370 3.3757 7 17 2.2618 3.2184 4.9758 8 6 0.5115 3.1684 2.8449 9 7 0.4632 2.6858 1.5693 10 6 -0.6637 2.8294 0.6443 11 6 1.9955 -0.7660 -1.1375 12 6 1.6315 -2.2427 -0.9701 13 1 0.5473 -2.3476 -0.9321 14 8 2.2010 -2.7391 0.2429 15 6 2.1711 -3.0284 -2.1375 16 1 2.7192 -2.5250 -2.9202 17 6 1.9651 -4.3900 -2.2061 18 7 1.2972 -5.0029 -1.2532 19 14 2.6345 -5.3641 -3.6527 20 1 2.2801 -6.7971 -3.4909 21 1 2.0433 -4.8477 -4.9133 22 1 4.1118 -5.2218 -3.7040 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 3.4113 1.7050 2.4997 29 1 -0.2719 3.7199 3.3435 30 1 -1.3417 1.9844 0.7637 31 1 -1.1958 3.7558 0.8609 32 1 -0.2919 2.8550 -0.3801 33 1 3.0798 -0.6612 -1.1756 34 1 1.5611 -0.3873 -2.0628 35 1 3.1653 -2.6771 0.2789 36 1 0.9500 -4.4971 -0.5019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929827452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:13 Heat of formation + Delta-G solvation = -0.662087 kcal Electronic energy + Delta-G solvation = -18972.057030 eV Core-core repulsion = 15904.318748 eV Total energy + Delta-G solvation = -3067.738282 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.43269 -37.57205 -36.33595 -35.13848 -32.91119 -32.06093 -30.45114 -28.20040 -26.90596 -26.19714 -24.75359 -22.51930 -20.68513 -20.36315 -19.22939 -17.38361 -17.11003 -16.14957 -15.18960 -15.02939 -14.56384 -14.22377 -13.85446 -13.79370 -13.60128 -13.17633 -13.04545 -12.91211 -12.50708 -12.33858 -12.21388 -11.87234 -11.58060 -11.45652 -11.02603 -10.90601 -10.73858 -10.66396 -10.12175 -10.03034 -9.23858 -8.51999 -8.47513 -8.15265 -8.05133 -7.75904 -6.35634 -4.19579 2.04322 2.19955 2.78343 3.08472 3.40963 3.42351 3.61681 4.35318 4.54473 4.57739 4.78394 4.90011 4.93288 5.12371 5.20489 5.35432 5.47091 5.55369 5.62789 5.70650 5.93375 5.99534 6.00695 6.15747 6.25503 6.33378 6.61310 6.71672 7.03161 7.15128 7.29922 7.42004 7.57433 8.01361 8.34357 8.85302 9.24043 9.67271 11.04403 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033494 B = 0.003802 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.757720 B = 7362.934980 C = 7757.673675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.524 5.524 3 C 0.120 3.880 4 C 0.048 3.952 5 C -0.168 4.168 6 C -0.111 4.111 7 Cl -0.063 7.063 8 C -0.003 4.003 9 N -0.441 5.441 10 C 0.068 3.932 11 C 0.038 3.962 12 C 0.221 3.779 13 H 0.047 0.953 14 O -0.570 6.570 15 C -0.654 4.654 16 H 0.048 0.952 17 C 0.035 3.965 18 N -0.891 5.891 19 Si 1.066 2.934 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.287 1.287 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.016 0.984 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.352 0.648 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 17.972 4.873 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.248 5.248 3 C -0.008 4.008 4 C -0.063 4.063 5 C -0.194 4.194 6 C -0.144 4.144 7 Cl -0.035 7.035 8 C -0.134 4.134 9 N -0.118 5.118 10 C -0.073 4.073 11 C -0.089 4.089 12 C 0.164 3.836 13 H 0.064 0.936 14 O -0.374 6.374 15 C -0.692 4.692 16 H 0.066 0.934 17 C -0.174 4.174 18 N -0.526 5.526 19 Si 0.894 3.106 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.214 1.214 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.113 0.887 27 H 0.051 0.949 28 H 0.162 0.838 29 H 0.184 0.816 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.197 0.803 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.821 16.175 4.692 17.076 hybrid contribution 0.160 2.210 -0.170 2.222 sum -2.662 18.385 4.521 19.119 Atomic orbital electron populations 1.22645 0.88423 1.03114 0.98679 1.62057 1.07320 1.10363 1.45017 1.20596 1.01101 0.88939 0.90165 1.20224 0.86359 1.01521 0.98244 1.20515 1.01543 1.05670 0.91623 1.20008 0.96590 1.09592 0.88240 1.98297 1.89491 1.93601 1.22125 1.21403 0.99245 1.07138 0.85627 1.43845 1.13575 1.42966 1.11384 1.22226 0.88210 1.03363 0.93542 1.22984 0.99346 0.97569 0.89023 1.19470 0.94258 0.86022 0.83870 0.93582 1.86473 1.23346 1.86230 1.41319 1.22439 1.42035 0.95896 1.08813 0.93397 1.25764 0.94679 0.95437 1.01485 1.70630 1.31345 1.40243 1.10340 0.83611 0.76046 0.76261 0.74645 1.20720 1.21556 1.21378 0.90575 0.92027 0.96526 0.88689 0.94880 0.83807 0.81556 0.90024 0.89846 0.89747 0.91448 0.95391 0.80342 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 7.97 60.06 0.48 0.80 16 2 N -0.52 -9.17 4.62 -244.37 -1.13 -10.30 16 3 C 0.12 1.72 5.16 -4.97 -0.03 1.69 16 4 C 0.05 0.67 5.69 -81.79 -0.47 0.20 16 5 C -0.17 -2.43 10.76 -39.76 -0.43 -2.86 16 6 C -0.11 -1.49 6.70 -39.74 -0.27 -1.75 16 7 Cl -0.06 -0.79 29.31 -51.86 -1.52 -2.31 16 8 C 0.00 -0.03 11.42 -16.67 -0.19 -0.22 16 9 N -0.44 -5.23 2.75 -119.84 -0.33 -5.56 16 10 C 0.07 0.58 9.24 59.85 0.55 1.13 16 11 C 0.04 0.76 4.56 -3.83 -0.02 0.74 16 12 C 0.22 5.49 2.30 -27.88 -0.06 5.42 16 13 H 0.05 1.24 6.42 -51.93 -0.33 0.91 16 14 O -0.57 -14.55 11.88 -35.23 -0.42 -14.97 16 15 C -0.65 -17.93 8.76 -34.44 -0.30 -18.23 16 16 H 0.05 1.29 7.74 -52.49 -0.41 0.88 16 17 C 0.04 1.00 5.40 -17.82 -0.10 0.91 16 18 N -0.89 -27.14 13.53 55.43 0.75 -26.39 16 19 Si 1.07 24.73 29.90 -169.99 -5.08 19.65 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.08 1.43 6.47 -51.93 -0.34 1.09 16 24 H 0.06 0.90 4.32 -51.93 -0.22 0.67 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 27 H 0.03 0.43 7.19 -51.93 -0.37 0.06 16 28 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 29 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.08 0.69 6.33 -51.93 -0.33 0.36 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.69 7.12 -51.93 -0.37 0.32 16 33 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 34 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.35 8.18 9.04 45.56 0.41 8.59 16 36 H 0.28 8.86 6.47 -40.82 -0.26 8.59 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -31.74 308.77 -7.86 -39.60 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -3.96 Total: 7.80 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.82 Total: -12.17 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: -0.71 Total: -42.25 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.42 Total: -14.97 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.52 Total: -2.31 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.74 -7.86 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929827452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.937 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds