Wall clock time and date at job start Mon Mar 30 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00085 * 2 1 4 4 C 1.50698 * 109.47417 * 66.04172 * 3 2 1 5 5 C 1.34860 * 125.87612 * 94.69383 * 4 3 2 6 6 C 1.40937 * 107.43203 * 179.85331 * 5 4 3 7 7 Cl 1.73605 * 126.29538 * 180.16067 * 6 5 4 8 8 C 1.34909 * 107.41122 * 0.41212 * 6 5 4 9 9 N 1.36331 * 125.87905 * 275.00635 * 4 3 2 10 10 C 1.46499 * 125.63959 * 0.03051 * 9 4 3 11 11 C 1.46896 * 111.00141 * 236.04164 * 2 1 3 12 12 C 1.53002 * 109.47246 * 293.95232 * 11 2 1 13 13 H 1.09000 * 109.46986 * 60.00111 * 12 11 2 14 14 O 1.42898 * 109.47113 * 300.00070 * 12 11 2 15 15 C 1.50706 * 109.46931 * 179.97438 * 12 11 2 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.09000 * 109.46850 * 183.95502 * 1 2 3 24 24 H 1.09000 * 109.47134 * 303.95834 * 1 2 3 25 25 H 1.08996 * 109.46988 * 63.95862 * 1 2 3 26 26 H 1.08996 * 109.47380 * 186.04984 * 3 2 1 27 27 H 1.09004 * 109.46708 * 306.04257 * 3 2 1 28 28 H 1.08004 * 126.28013 * 359.97438 * 5 4 3 29 29 H 1.08001 * 125.90632 * 179.72939 * 8 6 5 30 30 H 1.09000 * 109.46991 * 90.00231 * 10 9 4 31 31 H 1.09002 * 109.47116 * 210.00241 * 10 9 4 32 32 H 1.08999 * 109.47145 * 330.00368 * 10 9 4 33 33 H 1.09004 * 109.47535 * 173.95380 * 11 2 1 34 34 H 1.09004 * 109.47041 * 53.95419 * 11 2 1 35 35 H 0.96701 * 113.99881 * 299.99463 * 14 12 11 36 36 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 6 2.4195 2.1193 2.3943 6 6 1.7067 2.8370 3.3757 7 17 2.2618 3.2184 4.9758 8 6 0.5115 3.1684 2.8449 9 7 0.4632 2.6858 1.5693 10 6 -0.6637 2.8294 0.6443 11 6 1.9955 -0.7660 -1.1375 12 6 1.6315 -2.2427 -0.9701 13 1 0.5473 -2.3476 -0.9321 14 8 2.2010 -2.7391 0.2429 15 6 2.1711 -3.0284 -2.1375 16 1 2.7192 -2.5250 -2.9202 17 6 1.9651 -4.3900 -2.2061 18 7 1.2972 -5.0029 -1.2532 19 14 2.6345 -5.3641 -3.6527 20 1 2.2801 -6.7971 -3.4909 21 1 2.0433 -4.8477 -4.9133 22 1 4.1118 -5.2218 -3.7040 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 3.4113 1.7050 2.4997 29 1 -0.2719 3.7199 3.3435 30 1 -1.3417 1.9844 0.7637 31 1 -1.1958 3.7558 0.8609 32 1 -0.2919 2.8550 -0.3801 33 1 3.0798 -0.6612 -1.1756 34 1 1.5611 -0.3873 -2.0628 35 1 3.1653 -2.6771 0.2789 36 1 0.9500 -4.4971 -0.5019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929827452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:13 Heat of formation + Delta-G solvation = -22.965003 kcal Electronic energy + Delta-G solvation = -18973.024157 eV Core-core repulsion = 15904.318748 eV Total energy + Delta-G solvation = -3068.705409 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.39146 -39.14922 -37.34800 -36.86831 -34.21604 -33.77441 -31.72718 -29.82541 -28.09776 -27.09487 -26.48123 -24.19458 -22.06331 -21.62764 -20.21644 -19.38909 -18.13464 -17.32756 -16.94612 -16.30489 -15.92727 -15.70428 -15.36518 -15.17591 -14.86611 -14.58611 -14.18393 -13.94965 -13.90264 -13.79307 -13.26832 -13.25216 -12.81105 -12.71401 -12.58986 -12.42660 -12.16642 -12.01290 -11.92054 -11.65528 -11.16054 -10.61072 -10.06896 -9.49433 -9.29536 -8.99462 -8.59599 -6.44976 1.07836 1.27597 1.54489 1.62059 1.73956 1.81324 2.18517 2.57384 3.08351 3.20031 3.73344 3.91211 3.96172 4.09378 4.13479 4.20850 4.23853 4.35688 4.42349 4.49274 4.53986 4.64516 4.69979 4.88186 4.92902 4.99714 5.14070 5.45919 5.68825 5.81474 6.01057 6.03013 6.13700 6.19351 6.29751 6.57570 7.27202 7.53733 8.77735 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033494 B = 0.003802 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.757720 B = 7362.934980 C = 7757.673675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.126 3.874 4 C 0.033 3.967 5 C -0.188 4.188 6 C -0.136 4.136 7 Cl -0.061 7.061 8 C 0.011 3.989 9 N -0.439 5.439 10 C 0.060 3.940 11 C 0.056 3.944 12 C 0.220 3.780 13 H 0.018 0.982 14 O -0.584 6.584 15 C -0.661 4.661 16 H 0.053 0.947 17 C -0.017 4.017 18 N -0.922 5.922 19 Si 1.115 2.885 20 H -0.288 1.288 21 H -0.269 1.269 22 H -0.268 1.268 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.198 0.802 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.360 0.640 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 19.680 4.002 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.264 5.264 3 C -0.001 4.001 4 C -0.079 4.079 5 C -0.214 4.214 6 C -0.169 4.169 7 Cl -0.033 7.033 8 C -0.121 4.121 9 N -0.115 5.115 10 C -0.080 4.080 11 C -0.071 4.071 12 C 0.162 3.838 13 H 0.036 0.964 14 O -0.388 6.388 15 C -0.699 4.699 16 H 0.071 0.929 17 C -0.219 4.219 18 N -0.558 5.558 19 Si 0.937 3.063 20 H -0.213 1.213 21 H -0.195 1.195 22 H -0.194 1.194 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.155 0.845 29 H 0.215 0.785 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.206 0.794 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.008 17.921 3.813 18.567 hybrid contribution 0.187 1.764 0.169 1.782 sum -2.821 19.684 3.982 20.280 Atomic orbital electron populations 1.22582 0.87815 1.01401 1.00415 1.61925 1.08061 1.12528 1.43874 1.20551 1.01303 0.87079 0.91207 1.20096 0.87464 1.02448 0.97880 1.20655 1.01784 1.06376 0.92569 1.20177 0.97472 1.10708 0.88558 1.98291 1.89600 1.93589 1.21829 1.21907 0.99135 1.05756 0.85328 1.44078 1.13609 1.41967 1.11849 1.22496 0.87288 1.05062 0.93167 1.22566 0.99696 0.94761 0.90119 1.19375 0.92564 0.89064 0.82801 0.96415 1.86430 1.24081 1.86761 1.41577 1.22864 1.41169 0.96350 1.09512 0.92882 1.27290 0.94143 0.97344 1.03153 1.70779 1.33750 1.40231 1.11023 0.82978 0.76584 0.74522 0.72233 1.21341 1.19459 1.19360 0.94017 0.90287 0.94627 0.88395 0.92986 0.84538 0.78473 0.89962 0.86687 0.89274 0.90887 0.95068 0.79442 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 7.97 127.69 1.02 1.84 16 2 N -0.54 -18.44 4.62 -927.04 -4.28 -22.73 16 3 C 0.13 3.39 5.16 85.56 0.44 3.83 16 4 C 0.03 0.87 5.69 41.08 0.23 1.11 16 5 C -0.19 -5.32 10.76 22.15 0.24 -5.08 16 6 C -0.14 -3.47 6.70 22.17 0.15 -3.32 16 7 Cl -0.06 -1.46 29.31 -2.72 -0.08 -1.54 16 8 C 0.01 0.23 11.42 83.21 0.95 1.18 16 9 N -0.44 -9.27 2.75 -533.08 -1.47 -10.74 16 10 C 0.06 0.82 9.24 127.77 1.18 2.00 16 11 C 0.06 2.21 4.56 86.30 0.39 2.61 16 12 C 0.22 11.05 2.30 29.85 0.07 11.12 16 13 H 0.02 1.01 6.42 -2.39 -0.02 0.99 16 14 O -0.58 -30.48 11.88 -148.98 -1.77 -32.25 16 15 C -0.66 -36.24 8.76 25.60 0.22 -36.02 16 16 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 17 C -0.02 -0.99 5.40 84.66 0.46 -0.53 16 18 N -0.92 -57.32 13.53 21.45 0.29 -57.03 16 19 Si 1.12 49.19 29.90 68.60 2.05 51.24 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H 0.04 1.60 6.47 -2.39 -0.02 1.58 16 24 H 0.08 2.19 4.32 -2.39 -0.01 2.18 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 2.54 7.93 -2.39 -0.02 2.52 16 27 H 0.05 1.21 7.19 -2.39 -0.02 1.19 16 28 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.08 1.15 6.33 -2.39 -0.02 1.13 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.16 7.12 -2.39 -0.02 1.14 16 33 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 34 H 0.03 1.20 8.12 -2.38 -0.02 1.18 16 35 H 0.36 17.01 9.04 -74.06 -0.67 16.34 16 36 H 0.27 17.20 6.47 -92.71 -0.60 16.60 16 Total: -1.00 -68.90 308.77 0.69 -68.21 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.60 Total: 26.10 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 5.35 Total: -21.27 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -5.46 Total: -90.50 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.77 Total: -32.25 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.24 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -68.90 0.69 -68.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929827452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.248 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds