Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47434 * 2 1 4 4 N 1.46902 * 109.46878 * 239.99797 * 2 1 3 5 5 C 1.46905 * 110.99871 * 85.00326 * 4 2 1 6 6 C 1.53000 * 109.47123 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99875 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99631 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47319 * 60.00570 * 13 11 9 15 15 H 1.48503 * 109.46734 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47266 * 300.00384 * 13 11 9 17 17 C 1.50703 * 109.46914 * 120.00416 * 2 1 3 18 18 C 1.38812 * 120.81342 * 74.72097 * 17 2 1 19 19 F 1.35105 * 120.42744 * 359.97438 * 18 17 2 20 20 C 1.38456 * 119.14185 * 179.78023 * 18 17 2 21 21 N 1.31848 * 120.77962 * 0.49707 * 20 18 17 22 22 C 1.31846 * 121.77642 * 359.74540 * 21 20 18 23 23 C 1.38461 * 120.78231 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.43210 * 179.97438 * 23 22 21 25 25 H 1.08991 * 109.47264 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46625 * 299.99930 * 1 2 3 27 27 H 1.09002 * 109.46999 * 59.99703 * 1 2 3 28 28 H 1.00906 * 111.00466 * 321.05316 * 4 2 1 29 29 H 1.08992 * 109.47078 * 59.99994 * 5 4 2 30 30 H 1.09004 * 109.46829 * 299.99640 * 5 4 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 32 32 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 33 33 H 1.07995 * 119.61086 * 180.24838 * 20 18 17 34 34 H 1.07995 * 119.61245 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5950 -0.5332 -3.5745 7 1 1.9182 -1.3566 -3.8031 8 8 3.8999 -1.0498 -3.3053 9 6 2.6588 0.4054 -4.7518 10 1 2.3630 1.4376 -4.6361 11 6 3.0949 -0.0537 -5.9766 12 7 3.4546 -1.3108 -6.1176 13 14 3.1747 1.1100 -7.4357 14 1 4.0964 2.2319 -7.1243 15 1 3.6720 0.3763 -8.6272 16 1 1.8186 1.6466 -7.7157 17 6 2.0323 -0.7105 1.2305 18 6 1.9731 -2.0940 1.3266 19 9 1.4617 -2.8290 0.3148 20 6 2.4486 -2.7113 2.4711 21 7 2.9437 -2.0005 3.4651 22 6 3.0115 -0.6849 3.4114 23 6 2.5600 0.0031 2.2979 24 9 2.6324 1.3514 2.2506 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.4495 -1.4980 -1.4101 29 1 2.7589 1.0461 -2.1183 30 1 1.0870 0.6163 -2.5526 31 1 4.5556 -0.3714 -3.0936 32 1 3.7610 -1.6339 -6.9794 33 1 2.4100 -3.7875 2.5522 34 1 3.4241 -0.1373 4.2458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930476732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = -105.022708 kcal Electronic energy + Delta-G solvation = -20959.399938 eV Core-core repulsion = 17335.339559 eV Total energy + Delta-G solvation = -3624.060379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.21725 -49.06212 -40.14755 -37.34807 -35.33278 -32.37968 -32.05831 -30.82222 -29.73545 -27.41099 -25.05634 -23.99535 -23.53915 -21.25340 -20.67428 -18.24828 -18.12597 -16.91813 -16.85209 -16.31442 -15.92420 -15.42546 -15.15635 -14.70539 -14.56399 -14.37412 -14.10859 -13.82782 -13.68268 -13.31110 -13.07548 -12.69295 -12.59047 -12.35315 -11.82549 -11.30849 -11.24187 -10.92788 -10.83377 -10.79307 -10.12104 -10.01169 -9.63026 -9.08562 -9.04067 -8.58813 -8.16035 -7.89153 -6.01508 -4.20566 0.57442 0.72189 3.23286 3.27859 3.33461 3.34795 3.61641 3.89610 4.09274 4.19249 4.36277 4.41531 4.78296 4.87860 5.04849 5.18449 5.26102 5.36932 5.43954 5.56156 5.71835 5.79250 5.99481 6.11777 6.18807 6.35822 6.46326 6.78365 7.39994 7.43714 7.64693 7.80625 7.85131 8.17685 8.82891 9.44585 9.60630 11.02638 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.004365 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.469308 B = 6412.526003 C = 6706.661711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.116 3.884 3 H 0.096 0.904 4 N -0.673 5.673 5 C 0.035 3.965 6 C 0.236 3.764 7 H 0.052 0.948 8 O -0.554 6.554 9 C -0.576 4.576 10 H 0.054 0.946 11 C 0.080 3.920 12 N -0.858 5.858 13 Si 0.890 3.110 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 C -0.088 4.088 18 C 0.102 3.898 19 F -0.111 7.111 20 C 0.059 3.941 21 N -0.436 5.436 22 C 0.059 3.941 23 C 0.080 3.920 24 F -0.122 7.122 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.345 0.655 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.343 0.657 32 H 0.261 0.739 33 H 0.174 0.826 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 0.974 17.584 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.005 3.995 3 H 0.114 0.886 4 N -0.305 5.305 5 C -0.093 4.093 6 C 0.178 3.822 7 H 0.070 0.930 8 O -0.356 6.356 9 C -0.614 4.614 10 H 0.073 0.927 11 C -0.126 4.126 12 N -0.493 5.493 13 Si 0.717 3.283 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.098 4.098 18 C 0.080 3.920 19 F -0.090 7.090 20 C -0.099 4.099 21 N -0.143 5.143 22 C -0.100 4.100 23 C 0.057 3.943 24 F -0.100 7.100 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.165 0.835 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.186 0.814 32 H 0.071 0.929 33 H 0.191 0.809 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.724 -0.091 18.180 18.557 hybrid contribution -1.039 1.897 -1.962 2.920 sum -4.762 1.806 16.218 16.999 Atomic orbital electron populations 1.22482 0.95634 1.02754 1.02828 1.20404 0.93111 0.97857 0.88119 0.88628 1.60611 1.56491 1.10008 1.03401 1.22974 0.99153 0.95647 0.91574 1.19290 0.82670 0.92875 0.87401 0.93018 1.86561 1.20329 1.36660 1.92062 1.21581 1.47884 0.96778 0.95165 0.92739 1.25022 0.94137 0.94868 0.98568 1.70071 1.41010 1.14107 1.24136 0.86724 0.78451 0.81069 0.82034 1.20128 1.21157 1.20210 1.20663 0.99251 0.93030 0.96842 1.18368 0.98282 0.88447 0.86889 1.91541 1.83756 1.75965 1.57697 1.22974 0.97052 1.01587 0.88302 1.67738 1.12710 1.06536 1.27346 1.22899 0.99500 0.90485 0.97075 1.18438 1.01782 0.78277 0.95770 1.91534 1.94023 1.27975 1.96465 0.91986 0.92202 0.91094 0.83455 0.91970 0.95556 0.81355 0.92894 0.80890 0.81014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.11 37.16 0.34 -1.87 16 2 C 0.12 1.67 2.65 -68.86 -0.18 1.49 16 3 H 0.10 1.41 7.03 -51.93 -0.37 1.04 16 4 N -0.67 -11.89 5.58 -107.94 -0.60 -12.49 16 5 C 0.03 0.70 5.09 -3.82 -0.02 0.68 16 6 C 0.24 5.93 3.03 -27.88 -0.08 5.85 16 7 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 8 O -0.55 -14.53 12.60 -35.23 -0.44 -14.98 16 9 C -0.58 -15.70 8.76 -34.44 -0.30 -16.00 16 10 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 11 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 12 N -0.86 -25.42 12.84 55.43 0.71 -24.71 16 13 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.09 -1.17 4.98 -104.19 -0.52 -1.69 16 18 C 0.10 1.32 7.07 -39.29 -0.28 1.05 16 19 F -0.11 -1.57 14.64 2.25 0.03 -1.53 16 20 C 0.06 0.66 11.17 -17.46 -0.20 0.47 16 21 N -0.44 -5.00 10.36 -13.14 -0.14 -5.13 16 22 C 0.06 0.62 11.17 -17.46 -0.20 0.43 16 23 C 0.08 0.96 7.29 -39.28 -0.29 0.67 16 24 F -0.12 -1.48 16.40 2.25 0.04 -1.44 16 25 H 0.06 0.76 7.75 -51.93 -0.40 0.35 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.90 7.45 -51.93 -0.39 0.52 16 28 H 0.35 6.18 6.83 -39.29 -0.27 5.91 16 29 H 0.06 1.24 8.05 -51.93 -0.42 0.83 16 30 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 31 H 0.34 8.17 9.04 45.56 0.41 8.58 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 301.02 15.07 4.54 4.54 Total: -1.00 -30.60 301.02 -5.75 -36.35 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.05 Total: 10.10 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.82 Total: -6.78 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.03 Total: -42.33 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.44 Total: -14.98 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.07 Total: -2.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.60 -5.75 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930476732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.669 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds