Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47434 * 2 1 4 4 N 1.46902 * 109.46878 * 239.99797 * 2 1 3 5 5 C 1.46905 * 110.99871 * 85.00326 * 4 2 1 6 6 C 1.53000 * 109.47123 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99875 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99631 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47319 * 60.00570 * 13 11 9 15 15 H 1.48503 * 109.46734 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47266 * 300.00384 * 13 11 9 17 17 C 1.50703 * 109.46914 * 120.00416 * 2 1 3 18 18 C 1.38812 * 120.81342 * 74.72097 * 17 2 1 19 19 F 1.35105 * 120.42744 * 359.97438 * 18 17 2 20 20 C 1.38456 * 119.14185 * 179.78023 * 18 17 2 21 21 N 1.31848 * 120.77962 * 0.49707 * 20 18 17 22 22 C 1.31846 * 121.77642 * 359.74540 * 21 20 18 23 23 C 1.38461 * 120.78231 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.43210 * 179.97438 * 23 22 21 25 25 H 1.08991 * 109.47264 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46625 * 299.99930 * 1 2 3 27 27 H 1.09002 * 109.46999 * 59.99703 * 1 2 3 28 28 H 1.00906 * 111.00466 * 321.05316 * 4 2 1 29 29 H 1.08992 * 109.47078 * 59.99994 * 5 4 2 30 30 H 1.09004 * 109.46829 * 299.99640 * 5 4 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 32 32 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 33 33 H 1.07995 * 119.61086 * 180.24838 * 20 18 17 34 34 H 1.07995 * 119.61245 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5950 -0.5332 -3.5745 7 1 1.9182 -1.3566 -3.8031 8 8 3.8999 -1.0498 -3.3053 9 6 2.6588 0.4054 -4.7518 10 1 2.3630 1.4376 -4.6361 11 6 3.0949 -0.0537 -5.9766 12 7 3.4546 -1.3108 -6.1176 13 14 3.1747 1.1100 -7.4357 14 1 4.0964 2.2319 -7.1243 15 1 3.6720 0.3763 -8.6272 16 1 1.8186 1.6466 -7.7157 17 6 2.0323 -0.7105 1.2305 18 6 1.9731 -2.0940 1.3266 19 9 1.4617 -2.8290 0.3148 20 6 2.4486 -2.7113 2.4711 21 7 2.9437 -2.0005 3.4651 22 6 3.0115 -0.6849 3.4114 23 6 2.5600 0.0031 2.2979 24 9 2.6324 1.3514 2.2506 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.4495 -1.4980 -1.4101 29 1 2.7589 1.0461 -2.1183 30 1 1.0870 0.6163 -2.5526 31 1 4.5556 -0.3714 -3.0936 32 1 3.7610 -1.6339 -6.9794 33 1 2.4100 -3.7875 2.5522 34 1 3.4241 -0.1373 4.2458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930476732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = -127.784233 kcal Electronic energy + Delta-G solvation = -20960.386951 eV Core-core repulsion = 17335.339559 eV Total energy + Delta-G solvation = -3625.047392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.14321 -50.08143 -41.06736 -38.80884 -37.06254 -34.24735 -33.59341 -31.70705 -31.04235 -29.15140 -26.42058 -25.39097 -24.55607 -22.54899 -22.32971 -19.28099 -19.17530 -18.82146 -17.88735 -17.27256 -16.89656 -16.67259 -16.63068 -16.39118 -16.06544 -15.71242 -15.53354 -15.22073 -14.64782 -14.53070 -14.35715 -14.17136 -13.92821 -13.31733 -13.20900 -13.04853 -12.84682 -12.69234 -12.54936 -12.33935 -12.03582 -11.08327 -10.94354 -10.71657 -10.64230 -10.11573 -9.97407 -9.36008 -8.13916 -6.40482 -0.31661 -0.23687 1.40825 1.42398 1.50642 2.32771 2.38617 2.70073 2.93307 3.05790 3.12593 3.32212 3.41227 3.63950 3.93746 4.03368 4.12400 4.29487 4.38757 4.45410 4.51432 4.55327 4.67022 4.77844 4.80438 5.00139 5.07125 5.45657 5.59046 5.72988 5.93723 6.10870 6.35202 6.56065 6.72613 7.33873 7.58978 8.90522 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.004365 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.469308 B = 6412.526003 C = 6706.661711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 H 0.093 0.907 4 N -0.681 5.681 5 C 0.056 3.944 6 C 0.234 3.766 7 H 0.018 0.982 8 O -0.571 6.571 9 C -0.589 4.589 10 H 0.061 0.939 11 C 0.026 3.974 12 N -0.900 5.900 13 Si 0.961 3.039 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.268 1.268 17 C -0.101 4.101 18 C 0.083 3.917 19 F -0.123 7.123 20 C 0.068 3.932 21 N -0.444 5.444 22 C 0.073 3.927 23 C 0.073 3.927 24 F -0.123 7.123 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.342 0.658 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.352 0.648 32 H 0.261 0.739 33 H 0.198 0.802 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 2.071 18.802 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 H 0.111 0.889 4 N -0.312 5.312 5 C -0.073 4.073 6 C 0.176 3.824 7 H 0.036 0.964 8 O -0.374 6.374 9 C -0.628 4.628 10 H 0.079 0.921 11 C -0.176 4.176 12 N -0.537 5.537 13 Si 0.785 3.215 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.193 1.193 17 C -0.111 4.111 18 C 0.061 3.939 19 F -0.102 7.102 20 C -0.090 4.090 21 N -0.151 5.151 22 C -0.086 4.086 23 C 0.051 3.949 24 F -0.102 7.102 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.162 0.838 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.215 0.785 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.789 1.023 19.421 19.813 hybrid contribution -1.007 1.532 -2.238 2.893 sum -4.795 2.556 17.182 18.021 Atomic orbital electron populations 1.22403 0.94099 1.02991 1.03507 1.20408 0.94421 0.97418 0.87105 0.88904 1.60505 1.57390 1.09769 1.03575 1.22528 0.99095 0.95129 0.90562 1.19175 0.81925 0.91819 0.89445 0.96438 1.86505 1.21107 1.37540 1.92252 1.21999 1.47302 0.97328 0.96122 0.92087 1.25905 0.93690 0.96383 1.01650 1.70218 1.42385 1.16190 1.24862 0.85598 0.78850 0.78865 0.78157 1.19203 1.21069 1.19250 1.20651 1.00157 0.93434 0.96852 1.18562 0.99507 0.88400 0.87418 1.91509 1.84136 1.76199 1.58336 1.23350 0.95524 1.02764 0.87328 1.67862 1.13002 1.06971 1.27288 1.23408 0.97742 0.90266 0.97170 1.18516 1.02165 0.78237 0.95993 1.91531 1.94081 1.28062 1.96494 0.91987 0.90284 0.91564 0.83821 0.91687 0.94983 0.80367 0.92979 0.78484 0.77802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.11 71.98 0.66 -3.42 16 2 C 0.12 3.28 2.65 44.17 0.12 3.39 16 3 H 0.09 2.64 7.03 -2.39 -0.02 2.63 16 4 N -0.68 -24.08 5.58 -495.43 -2.76 -26.85 16 5 C 0.06 2.25 5.09 86.30 0.44 2.69 16 6 C 0.23 12.03 3.03 29.85 0.09 12.12 16 7 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 8 O -0.57 -30.52 12.60 -148.98 -1.88 -32.39 16 9 C -0.59 -32.26 8.76 25.60 0.22 -32.03 16 10 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 11 C 0.03 1.47 5.40 84.65 0.46 1.93 16 12 N -0.90 -54.20 12.84 21.45 0.28 -53.93 16 13 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 C -0.10 -2.59 4.98 -19.59 -0.10 -2.69 16 18 C 0.08 2.08 7.07 22.46 0.16 2.23 16 19 F -0.12 -3.46 14.64 44.97 0.66 -2.81 16 20 C 0.07 1.40 11.17 84.74 0.95 2.35 16 21 N -0.44 -9.08 10.36 -195.48 -2.02 -11.11 16 22 C 0.07 1.33 11.17 84.74 0.95 2.28 16 23 C 0.07 1.62 7.29 22.46 0.16 1.78 16 24 F -0.12 -2.77 16.40 44.97 0.74 -2.03 16 25 H 0.06 1.47 7.75 -2.39 -0.02 1.45 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.63 7.45 -2.39 -0.02 1.61 16 28 H 0.34 12.48 6.83 -89.69 -0.61 11.87 16 29 H 0.06 2.57 8.05 -2.39 -0.02 2.55 16 30 H 0.03 1.24 7.44 -2.39 -0.02 1.22 16 31 H 0.35 16.98 9.04 -74.06 -0.67 16.31 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -65.28 301.02 1.00 -64.28 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.13 Total: 28.99 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 4.10 Total: -9.37 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -4.51 Total: -91.88 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.88 Total: -32.39 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 1.40 Total: -4.84 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.28 1.00 -64.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930476732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.507 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds