Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48496 * 109.47148 * 270.00100 * 3 2 1 5 5 H 1.48501 * 109.46707 * 30.00228 * 3 2 1 6 6 H 1.48502 * 109.47337 * 149.99672 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 189.10713 * 7 2 1 9 9 N 1.36934 * 120.00098 * 9.10877 * 7 2 1 10 10 C 1.48146 * 127.83756 * 15.61148 * 9 7 2 11 11 C 1.54386 * 104.71862 * 140.35768 * 10 9 7 12 12 H 1.09006 * 117.61845 * 244.84056 * 11 10 9 13 13 C 1.54589 * 104.81510 * 23.89931 * 11 10 9 14 14 H 1.08995 * 123.10342 * 221.61864 * 13 11 10 15 15 C 1.48143 * 127.83841 * 195.61748 * 9 7 2 16 16 C 1.53003 * 59.72133 * 114.10423 * 13 11 10 17 17 H 1.08993 * 117.44188 * 252.31582 * 16 13 11 18 18 N 1.46500 * 117.44173 * 107.56631 * 16 13 11 19 19 C 1.34778 * 119.99936 * 154.99701 * 18 16 13 20 20 O 1.21279 * 119.99837 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99945 * 179.97438 * 19 18 16 22 22 H 1.09008 * 115.54672 * 34.42390 * 21 19 18 23 23 C 1.52994 * 117.50324 * 248.75261 * 21 19 18 24 24 C 1.53001 * 117.49773 * 180.08779 * 21 19 18 25 25 F 1.39904 * 117.49770 * 214.98076 * 24 21 19 26 26 F 1.39894 * 117.49816 * 359.97438 * 24 21 19 27 27 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.41207 * 259.20460 * 10 9 7 29 29 H 1.09006 * 110.40572 * 21.51967 * 10 9 7 30 30 H 1.08994 * 110.40818 * 338.36822 * 15 9 7 31 31 H 1.09000 * 110.40483 * 100.79709 * 15 9 7 32 32 H 0.97002 * 119.99900 * 335.00727 * 18 16 13 33 33 H 1.08999 * 117.49508 * 0.02562 * 23 21 19 34 34 H 1.09003 * 117.50345 * 145.01999 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1486 9 7 1.3385 -2.3807 -0.1867 10 6 -0.0338 -2.5711 -0.7113 11 6 0.0624 -3.8165 -1.6186 12 1 -0.1162 -3.6797 -2.6852 13 6 1.2866 -4.5980 -1.0888 14 1 2.0187 -5.0718 -1.7425 15 6 1.8193 -3.7545 0.0895 16 6 -0.1181 -5.1934 -0.9725 17 1 -0.5686 -5.2276 0.0194 18 7 -0.4521 -6.3129 -1.8564 19 6 -1.4119 -7.1895 -1.5003 20 8 -1.9994 -7.0511 -0.4484 21 6 -1.7560 -8.3407 -2.4098 22 1 -0.9215 -8.7631 -2.9697 23 6 -3.1249 -8.3171 -3.0926 24 6 -2.8558 -9.2998 -1.9502 25 9 -2.7139 -10.6517 -2.2812 26 9 -3.4648 -9.0412 -0.7175 27 1 -0.4850 0.8400 0.0004 28 1 -0.7320 -2.7496 0.1065 29 1 -0.3431 -1.7015 -1.2911 30 1 2.9087 -3.7785 0.1122 31 1 1.4105 -4.1177 1.0324 32 1 0.0177 -6.4233 -2.6979 33 1 -3.7765 -7.4685 -2.8843 34 1 -3.1912 -8.7242 -4.1015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958800761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -36.210759 kcal Electronic energy + Delta-G solvation = -20367.877371 eV Core-core repulsion = 16746.800902 eV Total energy + Delta-G solvation = -3621.076469 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.88836 -47.52105 -40.05393 -38.52081 -35.86119 -34.55353 -32.67650 -30.31352 -27.20581 -26.11824 -24.73039 -22.88115 -21.70228 -20.64045 -20.12609 -19.34450 -18.44211 -17.31919 -16.86776 -16.50862 -16.31365 -15.76424 -15.03761 -14.72313 -14.28254 -14.15612 -13.87094 -13.65892 -13.55876 -13.30591 -12.83732 -12.78947 -12.29002 -11.74749 -11.55968 -11.43370 -11.02876 -10.85698 -10.48456 -10.46188 -10.25257 -10.19182 -9.94459 -9.76247 -9.22990 -8.78353 -8.41997 -6.90155 -5.82166 -3.17010 2.06261 2.55503 2.77656 3.12509 3.36816 3.42009 3.44241 3.85981 4.04445 4.24301 4.28180 4.44593 4.56741 4.99148 5.08355 5.18037 5.30299 5.33802 5.37562 5.52773 5.78232 5.84648 6.05437 6.18247 6.46170 6.64502 6.71025 6.83890 7.32241 7.41090 7.50844 7.68863 8.09502 8.17614 9.08054 9.70771 10.47360 11.32068 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.053989 B = 0.003273 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.502942 B = 8552.261084 C = 8681.583037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.178 4.178 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.104 0.896 15 C 0.155 3.845 16 C 0.095 3.905 17 H 0.133 0.867 18 N -0.689 5.689 19 C 0.541 3.459 20 O -0.517 6.517 21 C -0.195 4.195 22 H 0.149 0.851 23 C -0.147 4.147 24 C 0.229 3.771 25 F -0.158 7.158 26 F -0.137 7.137 27 H 0.255 0.745 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.401 0.599 33 H 0.130 0.870 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 -17.155 -9.268 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.200 4.200 12 H 0.121 0.879 13 C -0.204 4.204 14 H 0.122 0.878 15 C 0.028 3.972 16 C -0.010 4.010 17 H 0.151 0.849 18 N -0.337 5.337 19 C 0.325 3.675 20 O -0.392 6.392 21 C -0.217 4.217 22 H 0.166 0.834 23 C -0.186 4.186 24 C 0.191 3.809 25 F -0.138 7.138 26 F -0.117 7.117 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.235 0.765 33 H 0.148 0.852 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.924 -16.791 -8.404 19.183 hybrid contribution 0.776 0.525 -0.518 1.070 sum -3.148 -16.266 -8.922 18.817 Atomic orbital electron populations 1.69893 1.05072 1.25510 1.55535 1.24912 0.95648 0.98022 1.01615 0.86096 0.78705 0.83187 0.77621 1.21495 1.21616 1.20512 1.19003 0.90845 0.82271 1.43634 0.90472 1.45177 1.13375 0.99983 1.73066 1.21073 0.86943 0.92492 0.93721 1.24812 1.01793 0.92763 1.00584 0.87851 1.24351 0.90109 1.02357 1.03546 0.87763 1.21132 0.97255 0.85915 0.92905 1.21931 0.98945 0.84660 0.95465 0.84944 1.45248 1.38157 1.27044 1.23252 1.19148 0.80124 0.82093 0.86139 1.90817 1.50915 1.73834 1.23611 1.23645 0.96671 0.98550 1.02841 0.83379 1.24308 0.95820 1.00606 0.97829 1.19476 1.00386 0.76779 0.84215 1.93048 1.95931 1.32889 1.91961 1.93143 1.83069 1.93161 1.42307 0.93480 0.95551 0.89047 0.92897 0.95473 0.76539 0.85170 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.62 10.86 55.49 0.60 -26.02 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.71 29.56 -169.99 -5.03 16.69 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.03 3.38 -168.86 -0.57 -15.60 16 10 C 0.18 4.38 5.69 -2.41 -0.01 4.37 16 11 C -0.18 -3.27 7.09 -88.98 -0.63 -3.90 16 12 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 13 C -0.18 -3.10 7.06 -89.05 -0.63 -3.72 16 14 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 15 C 0.15 3.20 7.04 -2.41 -0.02 3.18 16 16 C 0.10 1.55 5.97 -67.85 -0.41 1.14 16 17 H 0.13 2.48 7.40 -51.93 -0.38 2.10 16 18 N -0.69 -8.49 5.56 -53.73 -0.30 -8.79 16 19 C 0.54 7.13 7.61 -10.99 -0.08 7.04 16 20 O -0.52 -9.23 14.71 5.56 0.08 -9.14 16 21 C -0.19 -1.72 6.17 -91.78 -0.57 -2.29 16 22 H 0.15 0.82 8.14 -51.92 -0.42 0.40 16 23 C -0.15 -1.04 10.21 -26.69 -0.27 -1.32 16 24 C 0.23 2.39 5.19 -26.69 -0.14 2.25 16 25 F -0.16 -1.62 17.60 2.25 0.04 -1.58 16 26 F -0.14 -1.93 15.71 2.25 0.04 -1.90 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 3.59 8.83 -40.82 -0.36 3.23 16 33 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -32.81 300.52 -7.62 -40.43 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.01 Total: 1.34 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -3.01 Total: 0.05 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.27 Total: -50.42 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.81 -7.62 -40.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958800761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.220 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds