Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48496 * 109.47148 * 270.00100 * 3 2 1 5 5 H 1.48501 * 109.46707 * 30.00228 * 3 2 1 6 6 H 1.48502 * 109.47337 * 149.99672 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 189.10713 * 7 2 1 9 9 N 1.36934 * 120.00098 * 9.10877 * 7 2 1 10 10 C 1.48146 * 127.83756 * 15.61148 * 9 7 2 11 11 C 1.54386 * 104.71862 * 140.35768 * 10 9 7 12 12 H 1.09006 * 117.61845 * 244.84056 * 11 10 9 13 13 C 1.54589 * 104.81510 * 23.89931 * 11 10 9 14 14 H 1.08995 * 123.10342 * 221.61864 * 13 11 10 15 15 C 1.48143 * 127.83841 * 195.61748 * 9 7 2 16 16 C 1.53003 * 59.72133 * 114.10423 * 13 11 10 17 17 H 1.08993 * 117.44188 * 252.31582 * 16 13 11 18 18 N 1.46500 * 117.44173 * 107.56631 * 16 13 11 19 19 C 1.34778 * 119.99936 * 154.99701 * 18 16 13 20 20 O 1.21279 * 119.99837 * 0.02562 * 19 18 16 21 21 C 1.50694 * 119.99945 * 179.97438 * 19 18 16 22 22 H 1.09008 * 115.54672 * 34.42390 * 21 19 18 23 23 C 1.52994 * 117.50324 * 248.75261 * 21 19 18 24 24 C 1.53001 * 117.49773 * 180.08779 * 21 19 18 25 25 F 1.39904 * 117.49770 * 214.98076 * 24 21 19 26 26 F 1.39894 * 117.49816 * 359.97438 * 24 21 19 27 27 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.41207 * 259.20460 * 10 9 7 29 29 H 1.09006 * 110.40572 * 21.51967 * 10 9 7 30 30 H 1.08994 * 110.40818 * 338.36822 * 15 9 7 31 31 H 1.09000 * 110.40483 * 100.79709 * 15 9 7 32 32 H 0.97002 * 119.99900 * 335.00727 * 18 16 13 33 33 H 1.08999 * 117.49508 * 0.02562 * 23 21 19 34 34 H 1.09003 * 117.50345 * 145.01999 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1486 9 7 1.3385 -2.3807 -0.1867 10 6 -0.0338 -2.5711 -0.7113 11 6 0.0624 -3.8165 -1.6186 12 1 -0.1162 -3.6797 -2.6852 13 6 1.2866 -4.5980 -1.0888 14 1 2.0187 -5.0718 -1.7425 15 6 1.8193 -3.7545 0.0895 16 6 -0.1181 -5.1934 -0.9725 17 1 -0.5686 -5.2276 0.0194 18 7 -0.4521 -6.3129 -1.8564 19 6 -1.4119 -7.1895 -1.5003 20 8 -1.9994 -7.0511 -0.4484 21 6 -1.7560 -8.3407 -2.4098 22 1 -0.9215 -8.7631 -2.9697 23 6 -3.1249 -8.3171 -3.0926 24 6 -2.8558 -9.2998 -1.9502 25 9 -2.7139 -10.6517 -2.2812 26 9 -3.4648 -9.0412 -0.7175 27 1 -0.4850 0.8400 0.0004 28 1 -0.7320 -2.7496 0.1065 29 1 -0.3431 -1.7015 -1.2911 30 1 2.9087 -3.7785 0.1122 31 1 1.4105 -4.1177 1.0324 32 1 0.0177 -6.4233 -2.6979 33 1 -3.7765 -7.4685 -2.8843 34 1 -3.1912 -8.7242 -4.1015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958800761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -58.688973 kcal Electronic energy + Delta-G solvation = -20368.852100 eV Core-core repulsion = 16746.800902 eV Total energy + Delta-G solvation = -3622.051197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.68253 -48.36396 -41.24496 -39.95649 -36.69444 -36.08343 -34.34711 -32.11881 -28.94863 -27.83629 -25.91128 -23.62642 -23.24112 -21.97492 -21.39098 -20.88607 -19.30732 -18.87898 -18.20283 -17.58002 -17.24212 -16.86146 -16.62130 -16.05888 -15.60073 -15.29944 -15.00950 -14.86329 -14.66322 -14.61622 -14.41949 -13.79156 -13.49158 -13.35974 -13.25368 -12.90926 -12.71320 -12.31349 -12.14672 -12.03456 -11.89911 -11.67266 -11.26033 -11.02824 -10.82172 -10.69852 -9.76806 -8.93697 -7.92419 -5.29899 1.13424 1.47182 1.48935 1.58216 1.64452 2.03745 2.24624 2.48317 2.82090 3.20876 3.22328 3.31779 3.54185 3.60183 3.81230 3.84508 3.92258 4.12300 4.38093 4.47694 4.52972 4.60792 4.78444 4.80151 4.88042 4.98481 5.26898 5.39478 5.43577 5.52174 5.63556 6.15725 6.42264 6.99120 7.11703 7.66397 8.44504 9.21398 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.053989 B = 0.003273 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.502942 B = 8552.261084 C = 8681.583037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.181 4.181 12 H 0.128 0.872 13 C -0.158 4.158 14 H 0.146 0.854 15 C 0.145 3.855 16 C 0.115 3.885 17 H 0.102 0.898 18 N -0.670 5.670 19 C 0.536 3.464 20 O -0.571 6.571 21 C -0.183 4.183 22 H 0.193 0.807 23 C -0.114 4.114 24 C 0.193 3.807 25 F -0.159 7.159 26 F -0.169 7.169 27 H 0.250 0.750 28 H -0.009 1.009 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.017 0.983 32 H 0.423 0.577 33 H 0.125 0.875 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 -18.664 -11.902 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.203 4.203 12 H 0.145 0.855 13 C -0.178 4.178 14 H 0.163 0.837 15 C 0.020 3.980 16 C 0.008 3.992 17 H 0.120 0.880 18 N -0.320 5.320 19 C 0.323 3.677 20 O -0.450 6.450 21 C -0.204 4.204 22 H 0.210 0.790 23 C -0.152 4.152 24 C 0.156 3.844 25 F -0.139 7.139 26 F -0.149 7.149 27 H 0.059 0.941 28 H 0.009 0.991 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.262 0.738 33 H 0.143 0.857 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.428 -18.350 -11.082 21.574 hybrid contribution 0.300 0.936 0.381 1.054 sum -2.128 -17.414 -10.701 20.549 Atomic orbital electron populations 1.70105 1.06666 1.25807 1.57067 1.25789 0.96478 1.01459 1.01944 0.85018 0.77680 0.78594 0.77649 1.20897 1.22293 1.19108 1.19429 0.91478 0.83462 1.42772 0.89757 1.45492 1.13751 1.01228 1.73659 1.20790 0.86019 0.93971 0.93130 1.24476 1.03897 0.91309 1.00571 0.85453 1.24258 0.90574 1.01212 1.01796 0.83665 1.21300 0.98187 0.84426 0.94117 1.21410 0.98187 0.84866 0.94719 0.88017 1.44992 1.38130 1.25439 1.23453 1.19921 0.79070 0.82748 0.85964 1.90814 1.52668 1.75208 1.26261 1.23691 0.98737 0.95957 1.02045 0.79029 1.24521 0.93645 0.98579 0.98419 1.19999 1.02504 0.77359 0.84512 1.93039 1.96060 1.33029 1.91810 1.93072 1.83799 1.93399 1.44637 0.94107 0.99069 0.92372 0.91452 0.96540 0.73803 0.85676 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.41 10.86 21.65 0.24 -57.18 16 2 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 3 Si 0.98 45.17 29.56 68.60 2.03 47.20 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.24 -13.55 10.35 84.03 0.87 -12.68 16 8 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 9 N -0.62 -31.85 3.38 -688.15 -2.33 -34.18 16 10 C 0.19 9.27 5.69 86.53 0.49 9.76 16 11 C -0.18 -6.47 7.09 -9.73 -0.07 -6.54 16 12 H 0.13 3.96 8.14 -2.38 -0.02 3.94 16 13 C -0.16 -4.96 7.06 -9.78 -0.07 -5.03 16 14 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 15 C 0.15 5.92 7.04 86.54 0.61 6.53 16 16 C 0.12 3.60 5.97 45.04 0.27 3.87 16 17 H 0.10 3.92 7.40 -2.39 -0.02 3.90 16 18 N -0.67 -14.48 5.56 -442.30 -2.46 -16.94 16 19 C 0.54 13.07 7.61 87.66 0.67 13.74 16 20 O -0.57 -20.54 14.71 -3.03 -0.04 -20.59 16 21 C -0.18 -2.57 6.17 -11.54 -0.07 -2.64 16 22 H 0.19 1.00 8.14 -2.38 -0.02 0.98 16 23 C -0.11 -1.18 10.21 30.62 0.31 -0.87 16 24 C 0.19 3.67 5.19 30.62 0.16 3.83 16 25 F -0.16 -2.94 17.60 44.97 0.79 -2.14 16 26 F -0.17 -4.84 15.71 44.97 0.71 -4.13 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.06 3.24 6.51 -2.38 -0.02 3.22 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.42 5.47 8.83 -92.71 -0.82 4.65 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.18 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -76.83 300.52 2.88 -73.95 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.32 Total: 7.15 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 3.63 Total: 6.85 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -4.55 Total: -108.29 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.04 Total: -20.59 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 1.50 Total: -6.28 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.83 2.88 -73.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958800761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.262 kcal (2) G-P(sol) polarization free energy of solvation -76.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds