Wall clock time and date at job start Mon Mar 30 2020 00:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46510 * 240.00060 * 3 2 1 5 5 H 1.48496 * 109.47218 * 120.00078 * 3 2 1 6 6 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 155.62352 * 7 2 1 9 9 N 1.36937 * 119.99845 * 335.62295 * 7 2 1 10 10 C 1.48145 * 127.83797 * 158.92211 * 9 7 2 11 11 C 1.54389 * 104.62096 * 140.41350 * 10 9 7 12 12 H 1.08988 * 117.61536 * 244.78280 * 11 10 9 13 13 C 1.54290 * 104.95854 * 23.86373 * 11 10 9 14 14 H 1.08993 * 121.81592 * 222.17776 * 13 11 10 15 15 C 1.48153 * 127.83615 * 338.59902 * 9 7 2 16 16 C 1.52998 * 59.72049 * 114.13954 * 13 11 10 17 17 H 1.09006 * 117.44587 * 252.35072 * 16 13 11 18 18 N 1.46502 * 117.44399 * 107.64675 * 16 13 11 19 19 C 1.34782 * 119.99779 * 135.75864 * 18 16 13 20 20 O 1.21276 * 120.00508 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99489 * 180.02562 * 19 18 16 22 22 H 1.08996 * 115.55044 * 34.41926 * 21 19 18 23 23 C 1.53004 * 117.49754 * 180.08574 * 21 19 18 24 24 C 1.52997 * 117.49825 * 248.74529 * 21 19 18 25 25 F 1.39897 * 117.49981 * 0.02562 * 24 21 19 26 26 F 1.39899 * 117.49956 * 145.02165 * 24 21 19 27 27 H 0.96998 * 119.99845 * 174.47055 * 1 2 3 28 28 H 1.09007 * 110.40219 * 259.19721 * 10 9 7 29 29 H 1.08993 * 110.40859 * 21.50705 * 10 9 7 30 30 H 1.09000 * 110.40870 * 338.36725 * 15 9 7 31 31 H 1.09000 * 110.40347 * 100.80438 * 15 9 7 32 32 H 0.96996 * 120.00070 * 315.76375 * 18 16 13 33 33 H 1.08997 * 117.49980 * 214.98148 * 23 21 19 34 34 H 1.09006 * 117.49330 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0181 -1.2440 -0.3855 9 7 1.4172 -2.3350 0.4905 10 6 1.7765 -3.7440 0.2075 11 6 1.6235 -4.4653 1.5639 12 1 2.5224 -4.8803 2.0196 13 6 0.6307 -3.5985 2.3661 14 1 0.7826 -3.3798 3.4230 15 6 0.2748 -2.4294 1.4291 16 6 0.2454 -5.0155 1.9367 17 1 -0.4885 -5.1162 1.1370 18 7 0.1884 -6.0446 2.9779 19 6 -0.8431 -6.9113 3.0130 20 8 -1.7239 -6.8398 2.1824 21 6 -0.9019 -7.9695 4.0845 22 1 -0.5034 -7.6774 5.0560 23 6 -2.0973 -8.9245 4.0693 24 6 -0.7121 -9.4246 3.6515 25 9 -0.4967 -9.6709 2.2913 26 9 -0.0408 -10.2785 4.5331 27 1 -0.4850 -0.8361 -0.0809 28 1 1.0942 -4.1697 -0.5284 29 1 2.8053 -3.8102 -0.1463 30 1 0.1728 -1.5052 1.9979 31 1 -0.6455 -2.6467 0.8869 32 1 0.8930 -6.1020 3.6421 33 1 -2.4848 -9.2610 5.0309 34 1 -2.8412 -8.7871 3.2846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958800762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:14 Heat of formation + Delta-G solvation = -41.435150 kcal Electronic energy + Delta-G solvation = -20426.259088 eV Core-core repulsion = 16804.956073 eV Total energy + Delta-G solvation = -3621.303015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.06574 -47.73239 -40.19596 -38.74564 -35.91767 -34.75724 -32.89253 -30.24481 -27.47406 -26.00883 -24.66285 -22.95069 -21.75688 -20.74187 -20.18217 -19.49465 -18.55962 -17.59275 -17.47196 -16.69107 -16.46760 -16.14445 -14.79577 -14.45883 -14.33089 -14.14948 -13.97509 -13.87134 -13.80309 -13.63527 -13.18395 -12.71821 -12.42328 -12.04435 -11.72948 -11.54191 -10.90531 -10.73121 -10.63912 -10.60827 -10.32999 -10.13147 -10.05441 -9.67687 -9.30730 -8.68722 -8.48146 -7.03608 -6.16564 -3.22937 1.83571 2.54997 2.74204 3.02351 3.47628 3.50829 3.69322 3.74949 3.99234 4.07742 4.17526 4.47307 4.54781 4.92994 4.98812 5.11543 5.15366 5.23301 5.37833 5.38963 5.65985 5.73235 5.87246 5.98757 6.31519 6.53954 6.56357 6.69483 6.92263 6.94583 7.29820 7.70183 7.97473 8.40924 8.93370 9.74352 10.36562 11.19357 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.052316 B = 0.003357 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.076861 B = 8338.599802 C = 8468.701720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.025 4.025 3 Si 1.070 2.930 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.155 3.845 11 C -0.178 4.178 12 H 0.107 0.893 13 C -0.177 4.177 14 H 0.106 0.894 15 C 0.166 3.834 16 C 0.099 3.901 17 H 0.134 0.866 18 N -0.688 5.688 19 C 0.545 3.455 20 O -0.522 6.522 21 C -0.193 4.193 22 H 0.150 0.850 23 C -0.139 4.139 24 C 0.221 3.779 25 F -0.149 7.149 26 F -0.155 7.155 27 H 0.269 0.731 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.402 0.598 33 H 0.133 0.867 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 -17.526 11.348 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.199 4.199 12 H 0.125 0.875 13 C -0.199 4.199 14 H 0.124 0.876 15 C 0.039 3.961 16 C -0.006 4.006 17 H 0.152 0.848 18 N -0.336 5.336 19 C 0.329 3.671 20 O -0.397 6.397 21 C -0.216 4.216 22 H 0.168 0.832 23 C -0.177 4.177 24 C 0.184 3.816 25 F -0.129 7.129 26 F -0.136 7.136 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.236 0.764 33 H 0.151 0.849 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.751 -15.692 10.700 19.074 hybrid contribution 0.944 -1.920 0.429 2.182 sum -0.807 -17.613 11.130 20.850 Atomic orbital electron populations 1.70766 1.06548 1.30374 1.47920 1.25900 0.96590 1.01274 0.98888 0.83449 0.74677 0.75732 0.76199 1.21891 1.22024 1.20959 1.19741 0.97270 0.86816 1.42299 0.91674 1.45261 1.37271 1.00172 1.49334 1.21126 0.98812 0.86013 0.91229 1.24342 0.92341 1.02658 1.00539 0.87470 1.24424 1.04252 0.91493 0.99716 0.87571 1.21041 0.90817 0.94301 0.89901 1.21872 0.99319 0.86690 0.92735 0.84821 1.45233 1.24617 1.31924 1.31826 1.19103 0.82086 0.81306 0.84570 1.90749 1.37753 1.71901 1.39290 1.23744 1.05080 0.90465 1.02274 0.83194 1.24325 0.91030 0.96015 1.06340 1.19677 0.98864 0.89105 0.73976 1.93100 1.95585 1.94924 1.29324 1.93060 1.82002 1.71729 1.66788 0.91975 0.95534 0.92649 0.91318 0.95306 0.76396 0.84896 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 12.82 55.49 0.71 -27.04 16 2 C -0.02 -0.70 5.12 -17.43 -0.09 -0.79 16 3 Si 1.07 25.18 29.98 -169.99 -5.10 20.08 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.33 -9.44 10.19 -15.06 -0.15 -9.59 16 8 H 0.07 1.82 7.94 -52.49 -0.42 1.41 16 9 N -0.60 -15.21 3.23 -169.10 -0.55 -15.75 16 10 C 0.15 3.25 7.04 -2.41 -0.02 3.24 16 11 C -0.18 -3.04 7.06 -89.22 -0.63 -3.67 16 12 H 0.11 1.60 8.14 -51.94 -0.42 1.18 16 13 C -0.18 -3.20 7.04 -89.43 -0.63 -3.83 16 14 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 15 C 0.17 3.85 4.98 -2.62 -0.01 3.84 16 16 C 0.10 1.60 5.98 -67.93 -0.41 1.20 16 17 H 0.13 2.46 7.40 -51.93 -0.38 2.08 16 18 N -0.69 -8.59 5.56 -53.80 -0.30 -8.89 16 19 C 0.54 7.07 7.25 -10.98 -0.08 6.99 16 20 O -0.52 -8.84 15.82 5.56 0.09 -8.75 16 21 C -0.19 -1.67 6.17 -91.77 -0.57 -2.24 16 22 H 0.15 0.81 8.14 -51.93 -0.42 0.38 16 23 C -0.14 -1.02 10.02 -26.69 -0.27 -1.29 16 24 C 0.22 2.11 5.20 -26.69 -0.14 1.98 16 25 F -0.15 -1.88 17.13 2.25 0.04 -1.84 16 26 F -0.16 -1.47 17.60 2.25 0.04 -1.43 16 27 H 0.27 8.21 6.41 -40.82 -0.26 7.94 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.75 7.47 -51.93 -0.39 1.36 16 31 H 0.03 0.70 7.66 -51.93 -0.40 0.30 16 32 H 0.40 3.75 8.83 -40.82 -0.36 3.39 16 33 H 0.13 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.14 1.15 7.67 -51.93 -0.40 0.75 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -33.45 301.74 -7.45 -40.90 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.94 Total: 2.35 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.99 Total: -4.18 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.13 Total: -51.68 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.10 Total: 20.08 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.45 -7.45 -40.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958800762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.538 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds