Wall clock time and date at job start Mon Mar 30 2020 00:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46510 * 240.00060 * 3 2 1 5 5 H 1.48496 * 109.47218 * 120.00078 * 3 2 1 6 6 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 155.62352 * 7 2 1 9 9 N 1.36937 * 119.99845 * 335.62295 * 7 2 1 10 10 C 1.48145 * 127.83797 * 158.92211 * 9 7 2 11 11 C 1.54389 * 104.62096 * 140.41350 * 10 9 7 12 12 H 1.08988 * 117.61536 * 244.78280 * 11 10 9 13 13 C 1.54290 * 104.95854 * 23.86373 * 11 10 9 14 14 H 1.08993 * 121.81592 * 222.17776 * 13 11 10 15 15 C 1.48153 * 127.83615 * 338.59902 * 9 7 2 16 16 C 1.52998 * 59.72049 * 114.13954 * 13 11 10 17 17 H 1.09006 * 117.44587 * 252.35072 * 16 13 11 18 18 N 1.46502 * 117.44399 * 107.64675 * 16 13 11 19 19 C 1.34782 * 119.99779 * 135.75864 * 18 16 13 20 20 O 1.21276 * 120.00508 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99489 * 180.02562 * 19 18 16 22 22 H 1.08996 * 115.55044 * 34.41926 * 21 19 18 23 23 C 1.53004 * 117.49754 * 180.08574 * 21 19 18 24 24 C 1.52997 * 117.49825 * 248.74529 * 21 19 18 25 25 F 1.39897 * 117.49981 * 0.02562 * 24 21 19 26 26 F 1.39899 * 117.49956 * 145.02165 * 24 21 19 27 27 H 0.96998 * 119.99845 * 174.47055 * 1 2 3 28 28 H 1.09007 * 110.40219 * 259.19721 * 10 9 7 29 29 H 1.08993 * 110.40859 * 21.50705 * 10 9 7 30 30 H 1.09000 * 110.40870 * 338.36725 * 15 9 7 31 31 H 1.09000 * 110.40347 * 100.80438 * 15 9 7 32 32 H 0.96996 * 120.00070 * 315.76375 * 18 16 13 33 33 H 1.08997 * 117.49980 * 214.98148 * 23 21 19 34 34 H 1.09006 * 117.49330 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0181 -1.2440 -0.3855 9 7 1.4172 -2.3350 0.4905 10 6 1.7765 -3.7440 0.2075 11 6 1.6235 -4.4653 1.5639 12 1 2.5224 -4.8803 2.0196 13 6 0.6307 -3.5985 2.3661 14 1 0.7826 -3.3798 3.4230 15 6 0.2748 -2.4294 1.4291 16 6 0.2454 -5.0155 1.9367 17 1 -0.4885 -5.1162 1.1370 18 7 0.1884 -6.0446 2.9779 19 6 -0.8431 -6.9113 3.0130 20 8 -1.7239 -6.8398 2.1824 21 6 -0.9019 -7.9695 4.0845 22 1 -0.5034 -7.6774 5.0560 23 6 -2.0973 -8.9245 4.0693 24 6 -0.7121 -9.4246 3.6515 25 9 -0.4967 -9.6709 2.2913 26 9 -0.0408 -10.2785 4.5331 27 1 -0.4850 -0.8361 -0.0809 28 1 1.0942 -4.1697 -0.5284 29 1 2.8053 -3.8102 -0.1463 30 1 0.1728 -1.5052 1.9979 31 1 -0.6455 -2.6467 0.8869 32 1 0.8930 -6.1020 3.6421 33 1 -2.4848 -9.2610 5.0309 34 1 -2.8412 -8.7871 3.2846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958800762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:14 Heat of formation + Delta-G solvation = -64.189812 kcal Electronic energy + Delta-G solvation = -20427.245804 eV Core-core repulsion = 16804.956073 eV Total energy + Delta-G solvation = -3622.289731 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.81926 -48.50506 -41.39412 -40.16892 -36.78992 -36.27328 -34.53966 -32.07188 -29.23216 -27.67210 -25.94792 -23.61853 -23.35965 -22.09438 -21.42682 -21.04673 -19.54900 -19.39911 -18.43020 -17.84257 -17.37401 -17.01176 -16.21769 -15.91372 -15.62673 -15.40112 -15.27659 -15.14522 -14.99926 -14.74264 -14.64420 -13.92737 -13.69667 -13.42975 -13.29918 -12.67720 -12.56453 -12.37096 -12.33042 -11.93977 -11.87247 -11.66242 -11.47599 -11.10496 -10.88340 -10.63643 -9.90935 -9.12937 -8.40687 -5.43742 0.92345 1.57277 1.62432 1.67728 1.85111 1.96888 2.19073 2.60931 2.69742 3.08691 3.11795 3.25172 3.43655 3.45941 3.64342 3.71534 3.77748 3.96999 4.23874 4.26693 4.41985 4.59892 4.65912 4.68718 4.79533 4.82974 4.95818 5.12544 5.16528 5.34431 5.59937 6.22779 6.30746 6.76906 6.99380 7.60899 8.27623 8.95053 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.052316 B = 0.003357 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.076861 B = 8338.599802 C = 8468.701720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.079 4.079 3 Si 1.124 2.876 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.292 1.292 7 C -0.344 4.344 8 H 0.065 0.935 9 N -0.622 5.622 10 C 0.146 3.854 11 C -0.158 4.158 12 H 0.144 0.856 13 C -0.177 4.177 14 H 0.133 0.867 15 C 0.169 3.831 16 C 0.121 3.879 17 H 0.107 0.893 18 N -0.674 5.674 19 C 0.539 3.461 20 O -0.568 6.568 21 C -0.183 4.183 22 H 0.193 0.807 23 C -0.121 4.121 24 C 0.205 3.795 25 F -0.174 7.174 26 F -0.154 7.154 27 H 0.252 0.748 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.004 0.996 32 H 0.422 0.578 33 H 0.173 0.827 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -18.799 13.737 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.275 4.275 3 Si 0.947 3.053 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.218 1.218 7 C -0.472 4.472 8 H 0.083 0.917 9 N -0.347 5.347 10 C 0.020 3.980 11 C -0.179 4.179 12 H 0.162 0.838 13 C -0.198 4.198 14 H 0.151 0.849 15 C 0.043 3.957 16 C 0.014 3.986 17 H 0.125 0.875 18 N -0.324 5.324 19 C 0.326 3.674 20 O -0.446 6.446 21 C -0.204 4.204 22 H 0.210 0.790 23 C -0.159 4.159 24 C 0.167 3.833 25 F -0.154 7.154 26 F -0.134 7.134 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.261 0.739 33 H 0.191 0.809 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.404 -17.027 13.123 21.501 hybrid contribution 0.500 -1.617 -0.382 1.735 sum 0.096 -18.644 12.742 22.582 Atomic orbital electron populations 1.70894 1.07669 1.29354 1.50906 1.27414 0.96614 1.04912 0.98518 0.82752 0.73690 0.71335 0.77528 1.19844 1.20178 1.21756 1.20069 0.97316 0.88089 1.41693 0.91691 1.45556 1.37559 1.01326 1.50256 1.21269 0.98819 0.84351 0.93513 1.24214 0.94011 1.01937 0.97728 0.83821 1.24163 1.05397 0.90396 0.99884 0.84936 1.20837 0.89561 0.95192 0.90089 1.21372 0.97960 0.86500 0.92816 0.87519 1.45045 1.25372 1.30717 1.31228 1.19875 0.81062 0.81640 0.84808 1.90742 1.39421 1.73138 1.41299 1.23804 1.06228 0.88322 1.02091 0.78987 1.24515 0.89694 0.93981 1.07700 1.19950 1.00710 0.89609 0.72985 1.93048 1.95853 1.95135 1.31401 1.93063 1.82188 1.71702 1.66445 0.93773 0.96568 0.91885 0.94389 0.97789 0.73935 0.80911 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 12.82 21.65 0.28 -59.16 16 2 C -0.08 -4.59 5.12 84.86 0.43 -4.16 16 3 Si 1.12 51.07 29.98 68.60 2.06 53.12 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.34 -19.74 10.19 84.03 0.86 -18.89 16 8 H 0.07 3.65 7.94 -2.91 -0.02 3.63 16 9 N -0.62 -32.41 3.23 -688.91 -2.22 -34.64 16 10 C 0.15 6.14 7.04 86.53 0.61 6.75 16 11 C -0.16 -5.10 7.06 -9.88 -0.07 -5.17 16 12 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 13 C -0.18 -6.21 7.04 -10.02 -0.07 -6.28 16 14 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 15 C 0.17 8.16 4.98 86.40 0.43 8.59 16 16 C 0.12 3.75 5.98 44.99 0.27 4.02 16 17 H 0.11 4.01 7.40 -2.38 -0.02 3.99 16 18 N -0.67 -14.98 5.56 -442.52 -2.46 -17.44 16 19 C 0.54 12.90 7.25 87.66 0.64 13.53 16 20 O -0.57 -19.07 15.82 -3.02 -0.05 -19.11 16 21 C -0.18 -2.51 6.17 -11.54 -0.07 -2.59 16 22 H 0.19 1.00 8.14 -2.39 -0.02 0.98 16 23 C -0.12 -1.41 10.02 30.62 0.31 -1.10 16 24 C 0.20 3.40 5.20 30.62 0.16 3.56 16 25 F -0.17 -4.23 17.13 44.97 0.77 -3.46 16 26 F -0.15 -2.46 17.60 44.97 0.79 -1.66 16 27 H 0.25 16.26 6.41 -92.71 -0.59 15.66 16 28 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.04 2.02 7.47 -2.39 -0.02 2.00 16 31 H 0.00 0.22 7.66 -2.39 -0.02 0.21 16 32 H 0.42 6.05 8.83 -92.71 -0.82 5.24 16 33 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.12 1.87 7.67 -2.38 -0.02 1.85 16 Total: -1.00 -76.77 301.74 3.15 -73.62 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.50 Total: 10.47 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 3.49 Total: -1.74 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -4.41 Total: -111.24 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 1.56 Total: -5.13 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.06 Total: 53.12 kcal Total: -76.77 3.15 -73.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958800762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.433 kcal (2) G-P(sol) polarization free energy of solvation -76.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds