Wall clock time and date at job start Mon Mar 30 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47332 * 240.00021 * 3 2 1 5 5 H 1.48502 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47022 * 120.00239 * 3 2 1 7 7 C 1.38811 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00131 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.49063 * 127.54309 * 1.26876 * 9 7 2 11 11 C 1.56020 * 105.20796 * 181.97198 * 10 9 7 12 12 H 1.09005 * 116.89261 * 158.53182 * 11 10 9 13 13 C 1.57083 * 99.60593 * 32.13530 * 11 10 9 14 14 C 1.49291 * 126.94601 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.15042 * 16.74484 * 14 9 7 16 16 C 1.56001 * 105.06597 * 246.86811 * 14 9 7 17 17 N 1.47872 * 105.11202 * 288.88050 * 16 14 9 18 18 C 1.34778 * 126.94185 * 181.92537 * 17 16 14 19 19 O 1.21279 * 119.99711 * 179.68341 * 18 17 16 20 20 C 1.50701 * 119.99999 * 359.69038 * 18 17 16 21 21 H 1.09002 * 115.55088 * 325.57701 * 20 18 17 22 22 C 1.53005 * 117.49691 * 179.90771 * 20 18 17 23 23 C 1.52999 * 59.99973 * 252.48494 * 22 20 18 24 24 F 1.39898 * 117.50055 * 252.51242 * 23 22 20 25 25 F 1.39894 * 117.49565 * 107.48942 * 23 22 20 26 26 H 0.97001 * 119.99795 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.83134 * 62.73798 * 10 9 7 28 28 H 1.09000 * 109.69515 * 300.62202 * 10 9 7 29 29 H 1.09003 * 112.37066 * 64.26977 * 13 11 10 30 30 H 1.08996 * 112.36805 * 191.63111 * 13 11 10 31 31 H 1.09000 * 110.40172 * 169.92074 * 16 14 9 32 32 H 1.08995 * 110.21907 * 47.74393 * 16 14 9 33 33 H 1.09004 * 117.49602 * 359.97438 * 22 20 18 34 34 H 1.09004 * 117.49357 * 144.97176 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1519 -2.5839 -0.0262 11 6 -0.3612 -4.1286 0.0385 12 1 -1.3319 -4.4805 0.3879 13 6 0.8838 -4.5256 0.9103 14 6 1.9102 -3.7617 -0.0016 15 1 2.9607 -3.8370 0.2794 16 6 1.5234 -4.3660 -1.3869 17 7 0.0671 -4.6099 -1.3079 18 6 -0.7145 -5.1608 -2.2577 19 8 -1.9014 -5.3079 -2.0561 20 6 -0.1137 -5.5941 -3.5701 21 1 0.7052 -4.9766 -3.9390 22 6 -1.0530 -6.2145 -4.6064 23 6 -0.0512 -7.0956 -3.8575 24 9 1.0528 -7.5708 -4.5735 25 9 -0.5560 -7.9616 -2.8817 26 1 -0.4850 0.8401 0.0004 27 1 -0.5803 -2.1821 -0.9444 28 1 -0.6012 -2.1044 0.8435 29 1 0.8344 -4.1109 1.9171 30 1 1.0569 -5.6017 0.9205 31 1 2.0555 -5.3023 -1.5549 32 1 1.7455 -3.6555 -2.1830 33 1 -2.1054 -6.3096 -4.3387 34 1 -0.8521 -6.0047 -5.6571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032392488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:09 Heat of formation + Delta-G solvation = -38.324822 kcal Electronic energy + Delta-G solvation = -21551.443741 eV Core-core repulsion = 17930.275600 eV Total energy + Delta-G solvation = -3621.168141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.80085 -47.46960 -40.18292 -38.30459 -35.43979 -33.66572 -31.60765 -29.19357 -28.59413 -25.34248 -24.87666 -23.11012 -22.66231 -20.42173 -19.91893 -18.73971 -18.15051 -17.28434 -16.68651 -16.29166 -16.09141 -15.42332 -15.07045 -14.36755 -14.11901 -14.01214 -13.79084 -13.63294 -13.40978 -13.11031 -12.60638 -12.16688 -11.97697 -11.76850 -11.38090 -11.33740 -11.03450 -10.90431 -10.81523 -10.64504 -10.36683 -10.26730 -10.14240 -9.69290 -9.64401 -8.77445 -8.13029 -6.99346 -5.82052 -3.16573 2.26977 2.84446 3.10782 3.34641 3.39023 3.41031 3.46148 4.10383 4.26189 4.37393 4.45796 4.78273 5.02361 5.12304 5.28378 5.31477 5.44183 5.51164 5.57946 5.65855 5.69701 5.84869 6.07743 6.20806 6.35044 6.39743 6.53524 6.60673 7.34518 7.38721 7.64135 7.92598 8.02354 8.37563 9.02934 9.65412 10.34926 11.30861 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.005022 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.298415 B = 5574.326803 C = 5677.101796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.116 0.884 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.079 3.921 17 N -0.597 5.597 18 C 0.557 3.443 19 O -0.542 6.542 20 C -0.184 4.184 21 H 0.147 0.853 22 C -0.142 4.142 23 C 0.218 3.782 24 F -0.157 7.157 25 F -0.152 7.152 26 H 0.255 0.745 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -12.063 -5.926 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.192 4.192 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.046 4.046 17 N -0.330 5.330 18 C 0.343 3.657 19 O -0.421 6.421 20 C -0.206 4.206 21 H 0.165 0.835 22 C -0.180 4.180 23 C 0.181 3.819 24 F -0.138 7.138 25 F -0.132 7.132 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.153 0.847 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.933 -11.891 -5.855 13.287 hybrid contribution 0.683 0.800 -0.174 1.067 sum 1.616 -11.091 -6.029 12.727 Atomic orbital electron populations 1.69888 1.04988 1.25554 1.56198 1.24823 0.95689 0.97749 1.01947 0.86184 0.78448 0.83080 0.77915 1.21159 1.21589 1.21048 1.18998 0.90345 0.81975 1.44720 0.90097 1.45508 1.01173 0.99185 1.86230 1.22120 0.84691 0.86967 1.01432 1.24400 0.97992 0.97537 0.80337 0.86628 1.24195 0.96629 0.99056 0.99278 1.23146 0.96692 0.86376 0.90573 0.87500 1.23380 0.79604 0.99086 1.02573 1.49108 1.09699 1.58459 1.15706 1.18627 0.85823 0.78037 0.83191 1.90685 1.14956 1.56728 1.79722 1.23723 1.04419 0.94504 0.97935 0.83548 1.24289 0.99112 0.95832 0.98733 1.19703 0.88060 0.84259 0.89895 1.93043 1.53804 1.89799 1.77147 1.93067 1.86407 1.71503 1.62262 0.93458 0.93500 0.92154 0.89537 0.91579 0.92538 0.90894 0.84690 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.66 55.49 0.59 -25.78 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.05 10.38 -15.06 -0.16 -6.21 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.01 3.09 -155.36 -0.48 -14.49 16 10 C 0.17 4.04 4.82 -1.01 0.00 4.04 16 11 C 0.10 1.89 5.24 -62.57 -0.33 1.56 16 12 H 0.12 2.14 8.06 -51.93 -0.42 1.72 16 13 C -0.15 -2.53 6.80 -22.28 -0.15 -2.69 16 14 C 0.14 2.55 5.47 -62.54 -0.34 2.21 16 15 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 16 C 0.08 1.31 5.85 -1.68 -0.01 1.30 16 17 N -0.60 -10.84 2.95 -156.81 -0.46 -11.30 16 18 C 0.56 9.94 7.31 -10.98 -0.08 9.86 16 19 O -0.54 -11.17 16.61 5.56 0.09 -11.08 16 20 C -0.18 -2.49 5.57 -91.77 -0.51 -3.01 16 21 H 0.15 1.74 7.88 -51.93 -0.41 1.33 16 22 C -0.14 -1.56 10.01 -26.73 -0.27 -1.82 16 23 C 0.22 2.82 5.20 -26.73 -0.14 2.68 16 24 F -0.16 -1.96 17.60 2.25 0.04 -1.92 16 25 F -0.15 -2.30 17.13 2.25 0.04 -2.26 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.05 1.26 7.77 -51.93 -0.40 0.85 16 28 H 0.06 1.56 7.44 -51.93 -0.39 1.17 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.14 1.56 7.67 -51.93 -0.40 1.16 16 34 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -30.88 294.87 -6.94 -37.82 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.10 Total: 0.58 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.09 Total: 7.69 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.35 Total: -51.57 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.88 -6.94 -37.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032392488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.505 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds