Wall clock time and date at job start Mon Mar 30 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47332 * 240.00021 * 3 2 1 5 5 H 1.48502 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47022 * 120.00239 * 3 2 1 7 7 C 1.38811 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00131 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.49063 * 127.54309 * 1.26876 * 9 7 2 11 11 C 1.56020 * 105.20796 * 181.97198 * 10 9 7 12 12 H 1.09005 * 116.89261 * 158.53182 * 11 10 9 13 13 C 1.57083 * 99.60593 * 32.13530 * 11 10 9 14 14 C 1.49291 * 126.94601 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.15042 * 16.74484 * 14 9 7 16 16 C 1.56001 * 105.06597 * 246.86811 * 14 9 7 17 17 N 1.47872 * 105.11202 * 288.88050 * 16 14 9 18 18 C 1.34778 * 126.94185 * 181.92537 * 17 16 14 19 19 O 1.21279 * 119.99711 * 179.68341 * 18 17 16 20 20 C 1.50701 * 119.99999 * 359.69038 * 18 17 16 21 21 H 1.09002 * 115.55088 * 325.57701 * 20 18 17 22 22 C 1.53005 * 117.49691 * 179.90771 * 20 18 17 23 23 C 1.52999 * 59.99973 * 252.48494 * 22 20 18 24 24 F 1.39898 * 117.50055 * 252.51242 * 23 22 20 25 25 F 1.39894 * 117.49565 * 107.48942 * 23 22 20 26 26 H 0.97001 * 119.99795 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.83134 * 62.73798 * 10 9 7 28 28 H 1.09000 * 109.69515 * 300.62202 * 10 9 7 29 29 H 1.09003 * 112.37066 * 64.26977 * 13 11 10 30 30 H 1.08996 * 112.36805 * 191.63111 * 13 11 10 31 31 H 1.09000 * 110.40172 * 169.92074 * 16 14 9 32 32 H 1.08995 * 110.21907 * 47.74393 * 16 14 9 33 33 H 1.09004 * 117.49602 * 359.97438 * 22 20 18 34 34 H 1.09004 * 117.49357 * 144.97176 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1519 -2.5839 -0.0262 11 6 -0.3612 -4.1286 0.0385 12 1 -1.3319 -4.4805 0.3879 13 6 0.8838 -4.5256 0.9103 14 6 1.9102 -3.7617 -0.0016 15 1 2.9607 -3.8370 0.2794 16 6 1.5234 -4.3660 -1.3869 17 7 0.0671 -4.6099 -1.3079 18 6 -0.7145 -5.1608 -2.2577 19 8 -1.9014 -5.3079 -2.0561 20 6 -0.1137 -5.5941 -3.5701 21 1 0.7052 -4.9766 -3.9390 22 6 -1.0530 -6.2145 -4.6064 23 6 -0.0512 -7.0956 -3.8575 24 9 1.0528 -7.5708 -4.5735 25 9 -0.5560 -7.9616 -2.8817 26 1 -0.4850 0.8401 0.0004 27 1 -0.5803 -2.1821 -0.9444 28 1 -0.6012 -2.1044 0.8435 29 1 0.8344 -4.1109 1.9171 30 1 1.0569 -5.6017 0.9205 31 1 2.0555 -5.3023 -1.5549 32 1 1.7455 -3.6555 -2.1830 33 1 -2.1054 -6.3096 -4.3387 34 1 -0.8521 -6.0047 -5.6571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032392488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:09 Heat of formation + Delta-G solvation = -57.303630 kcal Electronic energy + Delta-G solvation = -21552.266724 eV Core-core repulsion = 17930.275600 eV Total energy + Delta-G solvation = -3621.991124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.82177 -48.49899 -41.65105 -39.73221 -36.56149 -35.46252 -33.32856 -30.84521 -30.25476 -26.99372 -26.30260 -24.66957 -23.62146 -21.88180 -21.46197 -20.14973 -19.46129 -18.64131 -18.07545 -17.75260 -17.22379 -16.92378 -16.50688 -15.99945 -15.63904 -15.15122 -15.01827 -14.82136 -14.69839 -14.53471 -13.90718 -13.68458 -13.45646 -13.32555 -13.03721 -12.87223 -12.68487 -12.44391 -12.22966 -12.16204 -12.10007 -11.90238 -11.53097 -11.40068 -11.01365 -10.73300 -9.62986 -8.93000 -7.85272 -5.20670 1.05349 1.48179 1.50639 1.56820 1.72693 1.95447 2.28735 2.48742 3.09467 3.13334 3.32091 3.39704 3.46765 3.66474 3.83190 3.85500 3.98691 4.17966 4.39292 4.53762 4.56627 4.63967 4.74586 4.80894 4.89783 4.99045 5.10681 5.20819 5.42877 5.47721 5.63183 6.07387 6.52822 6.97367 7.00523 7.69239 8.41170 9.26811 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.005022 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.298415 B = 5574.326803 C = 5677.101796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.230 4.230 8 H 0.097 0.903 9 N -0.616 5.616 10 C 0.186 3.814 11 C 0.101 3.899 12 H 0.116 0.884 13 C -0.131 4.131 14 C 0.135 3.865 15 H 0.136 0.864 16 C 0.087 3.913 17 N -0.604 5.604 18 C 0.548 3.452 19 O -0.578 6.578 20 C -0.194 4.194 21 H 0.167 0.833 22 C -0.119 4.119 23 C 0.218 3.782 24 F -0.152 7.152 25 F -0.168 7.168 26 H 0.245 0.755 27 H 0.000 1.000 28 H 0.022 0.978 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -13.718 -6.922 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.230 1.230 6 H -0.200 1.200 7 C -0.359 4.359 8 H 0.114 0.886 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.002 4.002 12 H 0.134 0.866 13 C -0.170 4.170 14 C 0.028 3.972 15 H 0.153 0.847 16 C -0.037 4.037 17 N -0.335 5.335 18 C 0.337 3.663 19 O -0.459 6.459 20 C -0.216 4.216 21 H 0.184 0.816 22 C -0.156 4.156 23 C 0.181 3.819 24 F -0.132 7.132 25 F -0.148 7.148 26 H 0.054 0.946 27 H 0.018 0.982 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.096 -13.596 -6.859 15.540 hybrid contribution 0.037 1.256 0.139 1.265 sum 3.133 -12.340 -6.720 14.396 Atomic orbital electron populations 1.70129 1.06620 1.25324 1.58645 1.25654 0.96386 1.01167 1.03098 0.85159 0.76993 0.78864 0.78353 1.20210 1.22988 1.20012 1.19495 0.91230 0.82994 1.42152 0.88575 1.45745 1.01327 1.00924 1.86114 1.21719 0.84927 0.89894 0.97408 1.24206 0.99504 0.94206 0.82252 0.86585 1.24094 0.93974 1.00753 0.98215 1.23551 0.98304 0.83434 0.91862 0.84682 1.23290 0.78866 1.00613 1.00917 1.49213 1.10521 1.58389 1.15405 1.19363 0.85471 0.77250 0.84258 1.90661 1.16563 1.58091 1.80606 1.23719 1.06083 0.95380 0.96385 0.81591 1.24487 0.98130 0.92913 1.00090 1.19763 0.88812 0.83308 0.90024 1.93057 1.53696 1.89662 1.76829 1.93036 1.86667 1.71979 1.63160 0.94641 0.98224 0.95935 0.89893 0.88229 0.88447 0.92042 0.85393 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.52 10.66 21.65 0.23 -57.28 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 3 Si 0.98 44.40 29.55 68.60 2.03 46.43 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.23 -11.93 10.38 84.03 0.87 -11.06 16 8 H 0.10 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.62 -28.92 3.09 -645.45 -1.99 -30.92 16 10 C 0.19 9.09 4.82 86.93 0.42 9.51 16 11 C 0.10 3.85 5.24 46.94 0.25 4.10 16 12 H 0.12 4.37 8.06 -2.38 -0.02 4.36 16 13 C -0.13 -4.08 6.80 33.48 0.23 -3.85 16 14 C 0.14 4.55 5.47 46.94 0.26 4.80 16 15 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 16 C 0.09 2.65 5.85 87.16 0.51 3.16 16 17 N -0.60 -21.19 2.95 -768.42 -2.26 -23.46 16 18 C 0.55 19.04 7.31 87.66 0.64 19.68 16 19 O -0.58 -23.87 16.61 -3.03 -0.05 -23.92 16 20 C -0.19 -4.79 5.57 -11.54 -0.06 -4.85 16 21 H 0.17 3.41 7.88 -2.39 -0.02 3.39 16 22 C -0.12 -2.26 10.01 30.60 0.31 -1.95 16 23 C 0.22 5.03 5.20 30.59 0.16 5.19 16 24 F -0.15 -3.28 17.60 44.97 0.79 -2.49 16 25 F -0.17 -4.77 17.13 44.97 0.77 -3.99 16 26 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.00 -0.03 7.77 -2.39 -0.02 -0.04 16 28 H 0.02 1.24 7.44 -2.39 -0.02 1.22 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.13 2.71 7.67 -2.39 -0.02 2.69 16 34 H 0.17 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -70.10 294.87 4.67 -65.43 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.12 Total: 8.90 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 4.04 Total: 21.32 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.03 Total: -111.66 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.05 Total: -23.92 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 1.56 Total: -6.49 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.10 4.67 -65.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032392488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.124 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds