Wall clock time and date at job start Mon Mar 30 2020 00:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.08998 * 116.24842 * 158.83915 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.09000 * 116.15598 * 16.72615 * 14 9 7 16 16 C 1.56022 * 104.09408 * 246.72039 * 14 9 7 17 17 N 1.47363 * 105.14891 * 288.61244 * 16 14 9 18 18 C 1.34778 * 126.79011 * 182.06353 * 17 16 14 19 19 O 1.21283 * 119.99735 * 180.27622 * 18 17 16 20 20 C 1.50694 * 120.00039 * 0.27787 * 18 17 16 21 21 H 1.09004 * 115.55350 * 34.41704 * 20 18 17 22 22 C 1.52997 * 117.49951 * 180.08903 * 20 18 17 23 23 C 1.53003 * 117.50072 * 248.75134 * 20 18 17 24 24 F 1.39903 * 117.49457 * 359.97438 * 23 20 18 25 25 F 1.39898 * 117.50102 * 145.01824 * 23 20 18 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 28 28 H 1.09005 * 110.31389 * 62.97650 * 10 9 7 29 29 H 1.08999 * 112.36611 * 64.27267 * 13 11 10 30 30 H 1.09000 * 112.37250 * 191.62470 * 13 11 10 31 31 H 1.09001 * 110.31071 * 47.67902 * 16 14 9 32 32 H 1.08999 * 110.31836 * 169.75915 * 16 14 9 33 33 H 1.09000 * 117.50143 * 214.97371 * 22 20 18 34 34 H 1.09000 * 117.50105 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3347 -4.4467 0.4123 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9627 -3.8382 0.2544 16 6 1.4966 -4.3386 -1.4071 17 7 0.0463 -4.5801 -1.3077 18 6 -0.7500 -5.1137 -2.2552 19 8 -1.9359 -5.2530 -2.0427 20 6 -0.1668 -5.5372 -3.5786 21 1 0.8463 -5.9377 -3.5394 22 6 -1.1228 -6.1340 -4.6133 23 6 -0.5581 -4.7256 -4.8152 24 9 -1.4304 -3.6475 -4.6308 25 9 0.4114 -4.5548 -5.8092 26 1 -0.4850 0.8400 0.0040 27 1 -0.5781 -2.0936 0.8793 28 1 -0.5776 -2.1495 -0.9087 29 1 0.8524 -4.1241 1.9141 30 1 1.0515 -5.6051 0.8984 31 1 1.7089 -3.6161 -2.1952 32 1 2.0223 -5.2737 -1.6003 33 1 -0.7386 -6.9269 -5.2552 34 1 -2.1735 -6.2208 -4.3367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032392489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:11 Heat of formation + Delta-G solvation = -37.119967 kcal Electronic energy + Delta-G solvation = -21742.118264 eV Core-core repulsion = 18121.002369 eV Total energy + Delta-G solvation = -3621.115895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.65969 -47.32525 -40.20677 -38.30662 -35.40115 -33.69263 -31.59793 -29.18834 -28.58504 -25.34661 -24.84780 -23.08210 -22.56989 -20.40259 -19.92118 -18.67627 -18.12483 -17.21228 -16.62829 -16.25906 -15.94827 -15.68734 -14.67894 -14.48484 -14.01214 -13.96269 -13.67254 -13.51028 -13.35093 -13.19041 -12.63294 -12.13820 -11.92677 -11.71725 -11.36257 -11.28960 -11.06541 -10.88544 -10.81457 -10.63060 -10.31142 -10.22311 -10.11280 -9.67465 -9.62889 -8.72938 -8.10984 -6.96095 -5.78435 -3.13561 2.32105 2.89830 3.13422 3.37114 3.41255 3.43512 3.53658 4.13628 4.30129 4.40304 4.56179 4.77313 5.03812 5.12547 5.26536 5.32693 5.47395 5.51834 5.58206 5.69606 5.71536 5.84983 6.10290 6.21520 6.34364 6.41478 6.53769 6.61822 7.38532 7.44743 7.69470 7.94628 8.07880 8.38811 9.07870 9.68992 10.37170 11.33656 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.006345 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.074539 B = 4412.151871 C = 5037.439751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.098 3.902 12 H 0.116 0.884 13 C -0.151 4.151 14 C 0.141 3.859 15 H 0.109 0.891 16 C 0.080 3.920 17 N -0.596 5.596 18 C 0.556 3.444 19 O -0.543 6.543 20 C -0.187 4.187 21 H 0.145 0.855 22 C -0.143 4.143 23 C 0.223 3.777 24 F -0.147 7.147 25 F -0.157 7.157 26 H 0.255 0.745 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -13.270 -5.437 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.004 4.004 12 H 0.134 0.866 13 C -0.191 4.191 14 C 0.032 3.968 15 H 0.126 0.874 16 C -0.045 4.045 17 N -0.328 5.328 18 C 0.343 3.657 19 O -0.421 6.421 20 C -0.209 4.209 21 H 0.162 0.838 22 C -0.181 4.181 23 C 0.185 3.815 24 F -0.128 7.128 25 F -0.138 7.138 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.064 -13.010 -5.407 14.129 hybrid contribution 0.616 1.178 -0.291 1.361 sum 1.680 -11.832 -5.697 13.239 Atomic orbital electron populations 1.69900 1.04969 1.25541 1.56072 1.24834 0.95695 0.97782 1.01858 0.86184 0.78453 0.83105 0.77886 1.21136 1.21583 1.21066 1.18993 0.90375 0.82040 1.44875 0.90152 1.45244 1.01316 0.99313 1.86267 1.21944 0.84754 0.86972 1.01512 1.24395 0.98008 0.97884 0.80108 0.86632 1.24231 0.96654 0.98928 0.99297 1.23244 0.96667 0.86343 0.90509 0.87372 1.23273 0.79718 0.99047 1.02468 1.48960 1.09700 1.58947 1.15156 1.18646 0.85684 0.77977 0.83418 1.90684 1.14956 1.56490 1.79978 1.23680 1.03280 1.03218 0.90689 0.83752 1.24293 1.02447 0.93085 0.98318 1.19655 0.86581 0.85361 0.89892 1.93111 1.67823 1.56825 1.94992 1.93042 1.62602 1.96277 1.61846 0.93451 0.92439 0.93356 0.89567 0.91590 0.90934 0.92661 0.85290 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.56 55.49 0.59 -26.31 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.23 10.38 -15.06 -0.16 -6.39 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.27 3.02 -156.12 -0.47 -14.74 16 10 C 0.17 4.16 4.76 -1.68 -0.01 4.15 16 11 C 0.10 1.88 5.23 -62.55 -0.33 1.55 16 12 H 0.12 2.13 8.08 -51.93 -0.42 1.71 16 13 C -0.15 -2.48 6.84 -22.10 -0.15 -2.63 16 14 C 0.14 2.55 5.54 -62.35 -0.35 2.21 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.08 1.34 5.80 -1.95 -0.01 1.33 16 17 N -0.60 -10.86 2.93 -157.18 -0.46 -11.32 16 18 C 0.56 9.99 7.31 -10.99 -0.08 9.91 16 19 O -0.54 -11.22 16.62 5.56 0.09 -11.13 16 20 C -0.19 -2.55 5.56 -91.77 -0.51 -3.06 16 21 H 0.14 1.56 7.79 -51.93 -0.40 1.16 16 22 C -0.14 -1.59 10.02 -26.69 -0.27 -1.85 16 23 C 0.22 3.25 5.20 -26.69 -0.14 3.11 16 24 F -0.15 -2.69 17.13 2.25 0.04 -2.65 16 25 F -0.16 -2.24 17.60 2.25 0.04 -2.20 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.06 1.51 7.47 -51.93 -0.39 1.12 16 28 H 0.05 1.35 7.67 -51.93 -0.40 0.96 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.13 1.57 7.67 -51.93 -0.40 1.17 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -32.00 294.43 -6.94 -38.94 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.09 Total: 0.13 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -2.09 Total: 8.10 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.35 Total: -52.37 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.08 Total: -4.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.00 -6.94 -38.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032392489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.821 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds