Wall clock time and date at job start Mon Mar 30 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.08998 * 116.24842 * 158.83915 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.09000 * 116.15598 * 16.72615 * 14 9 7 16 16 C 1.56022 * 104.09408 * 246.72039 * 14 9 7 17 17 N 1.47363 * 105.14891 * 288.61244 * 16 14 9 18 18 C 1.34778 * 126.79011 * 182.06353 * 17 16 14 19 19 O 1.21283 * 119.99735 * 180.27622 * 18 17 16 20 20 C 1.50694 * 120.00039 * 0.27787 * 18 17 16 21 21 H 1.09004 * 115.55350 * 34.41704 * 20 18 17 22 22 C 1.52997 * 117.49951 * 180.08903 * 20 18 17 23 23 C 1.53003 * 117.50072 * 248.75134 * 20 18 17 24 24 F 1.39903 * 117.49457 * 359.97438 * 23 20 18 25 25 F 1.39898 * 117.50102 * 145.01824 * 23 20 18 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 28 28 H 1.09005 * 110.31389 * 62.97650 * 10 9 7 29 29 H 1.08999 * 112.36611 * 64.27267 * 13 11 10 30 30 H 1.09000 * 112.37250 * 191.62470 * 13 11 10 31 31 H 1.09001 * 110.31071 * 47.67902 * 16 14 9 32 32 H 1.08999 * 110.31836 * 169.75915 * 16 14 9 33 33 H 1.09000 * 117.50143 * 214.97371 * 22 20 18 34 34 H 1.09000 * 117.50105 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3347 -4.4467 0.4123 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9627 -3.8382 0.2544 16 6 1.4966 -4.3386 -1.4071 17 7 0.0463 -4.5801 -1.3077 18 6 -0.7500 -5.1137 -2.2552 19 8 -1.9359 -5.2530 -2.0427 20 6 -0.1668 -5.5372 -3.5786 21 1 0.8463 -5.9377 -3.5394 22 6 -1.1228 -6.1340 -4.6133 23 6 -0.5581 -4.7256 -4.8152 24 9 -1.4304 -3.6475 -4.6308 25 9 0.4114 -4.5548 -5.8092 26 1 -0.4850 0.8400 0.0040 27 1 -0.5781 -2.0936 0.8793 28 1 -0.5776 -2.1495 -0.9087 29 1 0.8524 -4.1241 1.9141 30 1 1.0515 -5.6051 0.8984 31 1 1.7089 -3.6161 -2.1952 32 1 2.0223 -5.2737 -1.6003 33 1 -0.7386 -6.9269 -5.2552 34 1 -2.1735 -6.2208 -4.3367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032392489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:10 Heat of formation + Delta-G solvation = -57.882335 kcal Electronic energy + Delta-G solvation = -21743.018588 eV Core-core repulsion = 18121.002369 eV Total energy + Delta-G solvation = -3622.016219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.82393 -48.52228 -41.68536 -39.74894 -36.55726 -35.51451 -33.34823 -30.85670 -30.25750 -27.01271 -26.30081 -24.66278 -23.61766 -21.87614 -21.47260 -20.14138 -19.48275 -18.66711 -18.04083 -17.73991 -17.31409 -17.11079 -16.29260 -15.98682 -15.73600 -15.17631 -15.02157 -14.78966 -14.71827 -14.63695 -13.91135 -13.68341 -13.46240 -13.25541 -13.07143 -12.86568 -12.69349 -12.42859 -12.28904 -12.15721 -12.10593 -11.89938 -11.55434 -11.35991 -11.01602 -10.73718 -9.61859 -8.93529 -7.86431 -5.22401 1.05391 1.44850 1.48052 1.54090 1.74369 1.95322 2.35451 2.47145 3.11102 3.15431 3.31258 3.40302 3.47640 3.69433 3.78094 3.85985 4.00011 4.19258 4.37503 4.55722 4.58384 4.64415 4.76373 4.82483 4.90308 5.01888 5.12788 5.23477 5.42597 5.48680 5.62985 6.08202 6.54491 6.98068 7.00824 7.69373 8.39287 9.24649 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.006345 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.074539 B = 4412.151871 C = 5037.439751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.231 4.231 8 H 0.097 0.903 9 N -0.619 5.619 10 C 0.186 3.814 11 C 0.100 3.900 12 H 0.118 0.882 13 C -0.126 4.126 14 C 0.134 3.866 15 H 0.140 0.860 16 C 0.087 3.913 17 N -0.601 5.601 18 C 0.546 3.454 19 O -0.578 6.578 20 C -0.186 4.186 21 H 0.183 0.817 22 C -0.103 4.103 23 C 0.189 3.811 24 F -0.181 7.181 25 F -0.156 7.156 26 H 0.243 0.757 27 H 0.019 0.981 28 H -0.009 1.009 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.179 0.821 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -16.304 -5.898 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.266 4.266 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.360 4.360 8 H 0.115 0.885 9 N -0.343 5.343 10 C 0.060 3.940 11 C -0.003 4.003 12 H 0.135 0.865 13 C -0.165 4.165 14 C 0.028 3.972 15 H 0.157 0.843 16 C -0.037 4.037 17 N -0.333 5.333 18 C 0.335 3.665 19 O -0.459 6.459 20 C -0.207 4.207 21 H 0.200 0.800 22 C -0.140 4.140 23 C 0.152 3.848 24 F -0.161 7.161 25 F -0.137 7.137 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.009 0.991 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.197 0.803 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.621 -16.096 -5.874 17.513 hybrid contribution -0.153 2.085 -0.158 2.097 sum 3.468 -14.011 -6.032 15.644 Atomic orbital electron populations 1.70161 1.06678 1.25217 1.58703 1.25700 0.96403 1.01348 1.03148 0.85157 0.76999 0.78819 0.78403 1.20404 1.23047 1.19599 1.19518 0.91307 0.83146 1.42045 0.88514 1.45522 1.01424 1.01275 1.86098 1.21521 0.85092 0.90407 0.96997 1.24215 0.99870 0.94036 0.82183 0.86466 1.24125 0.93300 1.01090 0.97994 1.23715 0.98509 0.83083 0.91873 0.84289 1.23196 0.79076 1.01008 1.00427 1.49068 1.10584 1.58748 1.14873 1.19415 0.85301 0.77230 0.84573 1.90661 1.16572 1.57875 1.80825 1.23778 1.05676 1.03382 0.87913 0.80022 1.24505 1.01820 0.91388 0.96337 1.20194 0.87445 0.86204 0.90945 1.93039 1.69013 1.58804 1.95280 1.93035 1.62586 1.96348 1.61706 0.94763 0.96316 0.99094 0.89962 0.87316 0.93518 0.86982 0.80332 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.54 10.56 21.65 0.23 -59.31 16 2 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 3 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.23 -12.33 10.38 84.03 0.87 -11.46 16 8 H 0.10 4.72 7.83 -2.91 -0.02 4.69 16 9 N -0.62 -29.71 3.02 -647.84 -1.96 -31.67 16 10 C 0.19 9.38 4.76 87.17 0.41 9.80 16 11 C 0.10 3.80 5.23 46.93 0.25 4.05 16 12 H 0.12 4.38 8.08 -2.39 -0.02 4.36 16 13 C -0.13 -3.74 6.84 33.60 0.23 -3.51 16 14 C 0.13 4.46 5.54 47.06 0.26 4.72 16 15 H 0.14 3.78 8.14 -2.39 -0.02 3.77 16 16 C 0.09 2.63 5.80 87.26 0.51 3.14 16 17 N -0.60 -21.04 2.93 -769.59 -2.26 -23.30 16 18 C 0.55 18.93 7.31 87.66 0.64 19.57 16 19 O -0.58 -23.93 16.62 -3.04 -0.05 -23.98 16 20 C -0.19 -4.53 5.56 -11.54 -0.06 -4.59 16 21 H 0.18 2.97 7.79 -2.38 -0.02 2.95 16 22 C -0.10 -1.92 10.02 30.62 0.31 -1.62 16 23 C 0.19 5.26 5.20 30.62 0.16 5.42 16 24 F -0.18 -6.83 17.13 44.97 0.77 -6.06 16 25 F -0.16 -4.16 17.60 44.97 0.79 -3.37 16 26 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.02 1.06 7.47 -2.39 -0.02 1.05 16 28 H -0.01 -0.56 7.67 -2.38 -0.02 -0.58 16 29 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.11 2.21 8.05 -2.39 -0.02 2.19 16 33 H 0.18 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.13 2.66 7.67 -2.39 -0.02 2.64 16 Total: -1.00 -76.45 294.43 4.71 -71.74 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.12 Total: 6.29 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 4.04 Total: 21.80 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -3.99 Total: -114.27 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 1.56 Total: -9.43 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.45 4.71 -71.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032392489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.853 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds