Wall clock time and date at job start Mon Mar 30 2020 01:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34213 * 125.16521 * 2 1 4 4 C 1.37992 * 107.87769 * 179.71976 * 3 2 1 5 5 C 1.47238 * 126.80901 * 180.26246 * 4 3 2 6 6 O 1.21641 * 119.99895 * 180.20236 * 5 4 3 7 7 N 1.34770 * 120.00034 * 0.19493 * 5 4 3 8 8 C 1.36967 * 119.99744 * 180.02562 * 7 5 4 9 9 H 1.07998 * 119.99866 * 0.02562 * 8 7 5 10 10 C 1.38993 * 119.99812 * 180.02562 * 8 7 5 11 11 N 1.31411 * 119.99807 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 119.99859 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47266 * 60.00446 * 12 10 8 14 14 H 1.48500 * 109.47067 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47319 * 300.00151 * 12 10 8 16 16 C 1.46633 * 106.37943 * 0.42666 * 4 3 2 17 17 C 1.48250 * 126.51059 * 179.83444 * 16 4 3 18 18 C 1.39822 * 120.90944 * 144.71362 * 17 16 4 19 19 C 1.37960 * 119.01455 * 180.02562 * 18 17 16 20 20 N 1.31934 * 120.88641 * 359.97438 * 19 18 17 21 21 C 1.31931 * 122.01595 * 0.02562 * 20 19 18 22 22 C 1.37957 * 120.88696 * 359.97438 * 21 20 19 23 23 N 1.31379 * 106.97860 * 359.57294 * 16 4 3 24 24 H 1.08993 * 109.47036 * 269.97259 * 1 2 3 25 25 H 1.09004 * 109.46807 * 29.97394 * 1 2 3 26 26 H 1.09002 * 109.47265 * 149.97135 * 1 2 3 27 27 H 1.08000 * 126.05880 * 359.96625 * 3 2 1 28 28 H 0.96998 * 120.00229 * 0.02562 * 7 5 4 29 29 H 0.96997 * 119.99326 * 180.02562 * 11 10 8 30 30 H 1.07994 * 120.49429 * 0.02562 * 18 17 16 31 31 H 1.07995 * 119.56060 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.55567 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.49325 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2380 1.0972 0.0000 4 6 3.5556 0.6871 0.0064 5 6 4.7482 1.5506 0.0142 6 8 5.8586 1.0539 0.0156 7 7 4.6095 2.8911 0.0195 8 6 5.7190 3.6943 0.0261 9 1 6.7048 3.2533 0.0267 10 6 5.5760 5.0768 0.0322 11 7 4.3764 5.6133 0.0320 12 14 7.0891 6.1721 0.0405 13 1 7.9032 5.9010 -1.1715 14 1 6.6690 7.5965 0.0455 15 1 7.8979 5.8898 1.2535 16 6 3.5324 -0.7790 0.0000 17 6 4.7098 -1.6798 0.0000 18 6 4.6830 -2.8970 0.6876 19 6 5.8010 -3.7048 0.6619 20 7 6.8835 -3.3423 0.0004 21 6 6.9501 -2.2028 -0.6610 22 6 5.8776 -1.3355 -0.6876 23 7 2.2699 -1.1427 -0.0001 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5143 27 1 1.8904 2.1197 -0.0005 28 1 3.7241 3.2871 0.0186 29 1 4.2767 6.5781 0.0358 30 1 3.8002 -3.2002 1.2308 31 1 5.7901 -4.6466 1.1903 32 1 7.8566 -1.9454 -1.1888 33 1 5.9389 -0.4045 -1.2315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115926726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:25 Heat of formation + Delta-G solvation = 80.108724 kcal Electronic energy + Delta-G solvation = -19888.491766 eV Core-core repulsion = 16723.148475 eV Total energy + Delta-G solvation = -3165.343291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83896 -39.41697 -37.81810 -34.25974 -33.63792 -31.73497 -31.21023 -30.83969 -29.84244 -26.81930 -25.10221 -23.45660 -23.03897 -21.75912 -19.96340 -19.13551 -18.21277 -16.88489 -16.18356 -15.76410 -15.43854 -15.33120 -15.20068 -14.50510 -14.04594 -13.66010 -13.60573 -13.46178 -13.12512 -12.81628 -12.74557 -12.47020 -12.08971 -11.64777 -11.30326 -11.09863 -10.68113 -10.47836 -10.28724 -9.97146 -9.60222 -9.20690 -8.83556 -8.81712 -8.32627 -8.06596 -8.01101 -6.53189 -3.88423 1.22712 1.60764 1.95440 2.52278 2.73389 3.20333 3.21666 3.26180 4.10421 4.24219 4.34731 4.41184 4.73183 4.81202 4.98633 5.07258 5.08296 5.21234 5.29900 5.31537 5.43785 5.60401 5.70344 5.82964 6.02748 6.15613 6.32332 6.37454 6.69268 6.83220 7.06043 7.12062 7.45953 7.76389 7.99456 8.32393 8.53031 9.08527 9.44966 9.99029 10.64399 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.006021 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.153640 B = 4649.495904 C = 6300.629620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.372 5.372 3 C 0.074 3.926 4 C -0.232 4.232 5 C 0.507 3.493 6 O -0.588 6.588 7 N -0.549 5.549 8 C -0.294 4.294 9 H 0.107 0.893 10 C 0.023 3.977 11 N -0.898 5.898 12 Si 0.933 3.067 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.145 3.855 17 C 0.028 3.972 18 C -0.149 4.149 19 C 0.077 3.923 20 N -0.486 5.486 21 C 0.084 3.916 22 C -0.094 4.094 23 N -0.287 5.287 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.184 0.816 28 H 0.390 0.610 29 H 0.274 0.726 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -9.254 -0.568 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.153 5.153 3 C -0.073 4.073 4 C -0.247 4.247 5 C 0.294 3.706 6 O -0.475 6.475 7 N -0.182 5.182 8 C -0.424 4.424 9 H 0.125 0.875 10 C -0.179 4.179 11 N -0.538 5.538 12 Si 0.760 3.240 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.198 1.198 16 C -0.023 4.023 17 C 0.017 3.983 18 C -0.170 4.170 19 C -0.080 4.080 20 N -0.196 5.196 21 C -0.072 4.072 22 C -0.115 4.115 23 N -0.108 5.108 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.201 0.799 28 H 0.224 0.776 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.248 -10.831 -0.565 13.044 hybrid contribution -0.394 2.339 0.187 2.379 sum -7.642 -8.492 -0.378 11.430 Atomic orbital electron populations 1.21886 0.74201 1.04537 1.03402 1.47966 1.06640 1.03312 1.57402 1.23003 0.90712 0.93245 1.00357 1.21726 0.93362 0.92479 1.17131 1.16739 0.86990 0.82009 0.84816 1.90546 1.25897 1.73509 1.57574 1.41755 1.09640 1.03924 1.62921 1.19735 0.88321 0.87326 1.46987 0.87508 1.25307 0.98188 0.97368 0.97067 1.69590 1.21845 1.12755 1.49653 0.85874 0.80722 0.78205 0.79234 1.19736 1.20938 1.19772 1.21594 0.90572 0.91376 0.98737 1.17963 0.91200 0.91987 0.97110 1.22110 1.00136 0.94373 1.00360 1.22452 0.88684 0.99383 0.97501 1.67536 1.27022 1.17718 1.07293 1.22643 0.98376 0.89420 0.96798 1.22796 0.91490 0.99890 0.97322 1.77175 1.01351 1.07220 1.25080 0.90738 0.89221 0.89382 0.79869 0.77628 0.91636 0.85161 0.83178 0.82740 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.40 59.85 0.68 1.57 16 2 N -0.37 -5.41 3.96 -67.62 -0.27 -5.68 16 3 C 0.07 1.18 10.94 -16.60 -0.18 1.00 16 4 C -0.23 -4.63 6.28 -102.94 -0.65 -5.28 16 5 C 0.51 11.98 7.66 -12.61 -0.10 11.89 16 6 O -0.59 -15.13 12.06 5.24 0.06 -15.06 16 7 N -0.55 -13.45 5.27 -12.00 -0.06 -13.52 16 8 C -0.29 -7.85 9.68 -14.98 -0.14 -8.00 16 9 H 0.11 2.97 7.15 -52.49 -0.38 2.59 16 10 C 0.02 0.59 5.50 -17.45 -0.10 0.50 16 11 N -0.90 -23.26 13.05 55.50 0.72 -22.54 16 12 Si 0.93 20.29 29.55 -169.99 -5.02 15.26 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 C 0.15 2.77 6.98 -80.56 -0.56 2.21 16 17 C 0.03 0.51 5.75 -104.60 -0.60 -0.09 16 18 C -0.15 -2.35 9.88 -39.09 -0.39 -2.74 16 19 C 0.08 1.14 11.17 -17.61 -0.20 0.95 16 20 N -0.49 -8.13 10.35 -13.35 -0.14 -8.27 16 21 C 0.08 1.42 11.17 -17.61 -0.20 1.22 16 22 C -0.09 -1.76 7.89 -39.09 -0.31 -2.07 16 23 N -0.29 -4.95 12.49 34.57 0.43 -4.52 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.18 2.45 7.48 -52.49 -0.39 2.05 16 28 H 0.39 9.00 6.85 -40.82 -0.28 8.72 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.16 3.33 5.77 -52.49 -0.30 3.03 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -31.94 296.51 -5.56 -37.51 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.02 Total: 11.19 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.74 Total: 1.15 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.69 Total: -54.52 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.06 Total: -15.06 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.94 -5.56 -37.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115926726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.616 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds