Wall clock time and date at job start Mon Mar 30 2020 01:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34213 * 125.16521 * 2 1 4 4 C 1.37992 * 107.87769 * 179.71976 * 3 2 1 5 5 C 1.47238 * 126.80901 * 180.26246 * 4 3 2 6 6 O 1.21641 * 119.99895 * 180.20236 * 5 4 3 7 7 N 1.34770 * 120.00034 * 0.19493 * 5 4 3 8 8 C 1.36967 * 119.99744 * 180.02562 * 7 5 4 9 9 H 1.07998 * 119.99866 * 0.02562 * 8 7 5 10 10 C 1.38993 * 119.99812 * 180.02562 * 8 7 5 11 11 N 1.31411 * 119.99807 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 119.99859 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47266 * 60.00446 * 12 10 8 14 14 H 1.48500 * 109.47067 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47319 * 300.00151 * 12 10 8 16 16 C 1.46633 * 106.37943 * 0.42666 * 4 3 2 17 17 C 1.48250 * 126.51059 * 179.83444 * 16 4 3 18 18 C 1.39822 * 120.90944 * 144.71362 * 17 16 4 19 19 C 1.37960 * 119.01455 * 180.02562 * 18 17 16 20 20 N 1.31934 * 120.88641 * 359.97438 * 19 18 17 21 21 C 1.31931 * 122.01595 * 0.02562 * 20 19 18 22 22 C 1.37957 * 120.88696 * 359.97438 * 21 20 19 23 23 N 1.31379 * 106.97860 * 359.57294 * 16 4 3 24 24 H 1.08993 * 109.47036 * 269.97259 * 1 2 3 25 25 H 1.09004 * 109.46807 * 29.97394 * 1 2 3 26 26 H 1.09002 * 109.47265 * 149.97135 * 1 2 3 27 27 H 1.08000 * 126.05880 * 359.96625 * 3 2 1 28 28 H 0.96998 * 120.00229 * 0.02562 * 7 5 4 29 29 H 0.96997 * 119.99326 * 180.02562 * 11 10 8 30 30 H 1.07994 * 120.49429 * 0.02562 * 18 17 16 31 31 H 1.07995 * 119.56060 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.55567 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.49325 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2380 1.0972 0.0000 4 6 3.5556 0.6871 0.0064 5 6 4.7482 1.5506 0.0142 6 8 5.8586 1.0539 0.0156 7 7 4.6095 2.8911 0.0195 8 6 5.7190 3.6943 0.0261 9 1 6.7048 3.2533 0.0267 10 6 5.5760 5.0768 0.0322 11 7 4.3764 5.6133 0.0320 12 14 7.0891 6.1721 0.0405 13 1 7.9032 5.9010 -1.1715 14 1 6.6690 7.5965 0.0455 15 1 7.8979 5.8898 1.2535 16 6 3.5324 -0.7790 0.0000 17 6 4.7098 -1.6798 0.0000 18 6 4.6830 -2.8970 0.6876 19 6 5.8010 -3.7048 0.6619 20 7 6.8835 -3.3423 0.0004 21 6 6.9501 -2.2028 -0.6610 22 6 5.8776 -1.3355 -0.6876 23 7 2.2699 -1.1427 -0.0001 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5143 27 1 1.8904 2.1197 -0.0005 28 1 3.7241 3.2871 0.0186 29 1 4.2767 6.5781 0.0358 30 1 3.8002 -3.2002 1.2308 31 1 5.7901 -4.6466 1.1903 32 1 7.8566 -1.9454 -1.1888 33 1 5.9389 -0.4045 -1.2315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115926726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:25 Heat of formation + Delta-G solvation = 57.967186 kcal Electronic energy + Delta-G solvation = -19889.451896 eV Core-core repulsion = 16723.148475 eV Total energy + Delta-G solvation = -3166.303420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.17934 -40.70185 -39.64105 -36.04123 -35.01420 -33.42765 -32.59394 -32.14017 -31.28542 -27.99156 -26.88010 -24.84571 -24.32164 -23.20435 -21.30303 -20.73038 -20.02120 -18.38030 -17.64308 -17.05649 -16.84519 -16.71822 -16.45470 -16.18488 -15.74431 -15.16126 -15.00011 -14.82699 -14.56330 -14.22542 -13.77568 -13.51580 -13.50150 -13.36532 -12.92692 -12.55612 -12.39605 -12.14517 -11.95874 -11.47727 -11.26180 -10.61334 -10.33709 -10.12984 -10.00202 -9.83876 -9.44525 -8.46685 -5.90130 -0.12162 0.31650 0.59342 1.26181 1.42450 1.45132 1.50136 1.54863 2.31685 2.54357 2.96050 3.07338 3.34568 3.39406 3.56838 3.63077 3.95786 4.08453 4.20828 4.29512 4.43834 4.46495 4.54191 4.66553 4.71734 4.75102 4.91029 5.02356 5.29371 5.44448 5.49128 5.80917 5.88540 6.03206 6.43351 6.63044 7.03873 7.13699 7.57060 8.13529 8.70873 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.006021 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.153640 B = 4649.495904 C = 6300.629620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.357 5.357 3 C 0.103 3.897 4 C -0.281 4.281 5 C 0.510 3.490 6 O -0.616 6.616 7 N -0.559 5.559 8 C -0.328 4.328 9 H 0.083 0.917 10 C -0.010 4.010 11 N -0.916 5.916 12 Si 0.991 3.009 13 H -0.272 1.272 14 H -0.271 1.271 15 H -0.274 1.274 16 C 0.132 3.868 17 C 0.007 3.993 18 C -0.146 4.146 19 C 0.085 3.915 20 N -0.497 5.497 21 C 0.081 3.919 22 C -0.116 4.116 23 N -0.291 5.291 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.101 0.899 27 H 0.213 0.787 28 H 0.395 0.605 29 H 0.279 0.721 30 H 0.152 0.848 31 H 0.193 0.807 32 H 0.171 0.829 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 -9.934 -0.025 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.137 5.137 3 C -0.046 4.046 4 C -0.296 4.296 5 C 0.299 3.701 6 O -0.505 6.505 7 N -0.194 5.194 8 C -0.457 4.457 9 H 0.101 0.899 10 C -0.210 4.210 11 N -0.557 5.557 12 Si 0.815 3.185 13 H -0.197 1.197 14 H -0.195 1.195 15 H -0.199 1.199 16 C -0.035 4.035 17 C -0.003 4.003 18 C -0.167 4.167 19 C -0.072 4.072 20 N -0.207 5.207 21 C -0.075 4.075 22 C -0.137 4.137 23 N -0.112 5.112 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.120 0.880 27 H 0.230 0.770 28 H 0.229 0.771 29 H 0.088 0.912 30 H 0.169 0.831 31 H 0.209 0.791 32 H 0.188 0.812 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.093 -11.537 -0.028 14.690 hybrid contribution -0.016 2.398 0.029 2.398 sum -9.110 -9.139 0.000 12.904 Atomic orbital electron populations 1.22460 0.70429 1.06816 1.05536 1.48489 1.08525 1.02126 1.54550 1.23318 0.89547 0.94715 0.97031 1.21467 0.93617 0.92758 1.21790 1.17321 0.87952 0.82029 0.82818 1.90526 1.27674 1.74125 1.58137 1.41694 1.09282 1.04116 1.64332 1.19671 0.88238 0.88377 1.49442 0.89873 1.25992 1.00908 0.97829 0.96252 1.69637 1.22967 1.13204 1.49862 0.85006 0.77581 0.76969 0.78921 1.19672 1.19515 1.19912 1.21721 0.91411 0.91095 0.99258 1.18237 0.91118 0.93200 0.97792 1.22355 1.01281 0.93312 0.99748 1.23139 0.87555 1.00333 0.96158 1.67641 1.27893 1.17359 1.07759 1.22855 0.98411 0.89364 0.96860 1.22589 0.92895 0.99621 0.98640 1.77132 1.00721 1.08309 1.25073 0.88595 0.86152 0.88045 0.77028 0.77051 0.91200 0.83069 0.79050 0.81208 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 11.40 127.77 1.46 2.62 16 2 N -0.36 -9.42 3.96 -367.86 -1.46 -10.88 16 3 C 0.10 3.15 10.94 84.27 0.92 4.07 16 4 C -0.28 -11.35 6.28 -18.78 -0.12 -11.47 16 5 C 0.51 25.12 7.66 86.61 0.66 25.79 16 6 O -0.62 -33.59 12.06 -4.16 -0.05 -33.64 16 7 N -0.56 -28.33 5.27 -310.13 -1.64 -29.97 16 8 C -0.33 -18.16 9.68 84.07 0.81 -17.34 16 9 H 0.08 4.89 7.15 -2.91 -0.02 4.87 16 10 C -0.01 -0.49 5.50 84.94 0.47 -0.03 16 11 N -0.92 -47.46 13.05 21.67 0.28 -47.18 16 12 Si 0.99 41.90 29.55 68.60 2.03 43.93 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 14 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 C 0.13 5.05 6.98 44.07 0.31 5.36 16 17 C 0.01 0.25 5.75 -19.85 -0.11 0.14 16 18 C -0.15 -4.44 9.88 22.59 0.22 -4.22 16 19 C 0.08 2.37 11.17 84.61 0.95 3.31 16 20 N -0.50 -16.16 10.35 -196.14 -2.03 -18.19 16 21 C 0.08 2.79 11.17 84.61 0.95 3.73 16 22 C -0.12 -4.56 7.89 22.59 0.18 -4.39 16 23 N -0.29 -9.55 12.49 -44.53 -0.56 -10.11 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.12 0.97 8.13 -2.38 -0.02 0.95 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.21 5.11 7.48 -2.91 -0.02 5.09 16 28 H 0.40 18.56 6.85 -92.71 -0.63 17.93 16 29 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 31 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.17 5.07 8.06 -2.91 -0.02 5.05 16 33 H 0.13 6.00 5.77 -2.91 -0.02 5.98 16 Total: -1.00 -71.59 296.51 3.80 -67.79 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.53 Total: 30.68 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.69 Total: 7.57 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -5.39 Total: -116.33 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.05 Total: -33.64 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.59 3.80 -67.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115926726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.756 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds